Publications by authors named "Waraporn Tongprasit"

16Publications

Transcriptional analysis of highly syntenic regions between Medicago truncatula and Glycine max using tiling microarrays.

Genome Biol 2008 19;9(3):R57. Epub 2008 Mar 19.

Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1186/gb-2008-9-3-r57DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2397509PMC
June 2008

In-depth query of large genomes using tiling arrays.

Methods Mol Biol 2007 ;377:163-74

Systemix Institute, Cupertino, CA, USA.

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http://dx.doi.org/10.1007/978-1-59745-390-5_10DOI Listing
August 2007

The genome of the sea urchin Strongylocentrotus purpuratus.

Authors:
Erica Sodergren George M Weinstock Eric H Davidson R Andrew Cameron Richard A Gibbs Robert C Angerer Lynne M Angerer Maria Ina Arnone David R Burgess Robert D Burke James A Coffman Michael Dean Maurice R Elphick Charles A Ettensohn Kathy R Foltz Amro Hamdoun Richard O Hynes William H Klein William Marzluff David R McClay Robert L Morris Arcady Mushegian Jonathan P Rast L Courtney Smith Michael C Thorndyke Victor D Vacquier Gary M Wessel Greg Wray Lan Zhang Christine G Elsik Olga Ermolaeva Wratko Hlavina Gretchen Hofmann Paul Kitts Melissa J Landrum Aaron J Mackey Donna Maglott Georgia Panopoulou Albert J Poustka Kim Pruitt Victor Sapojnikov Xingzhi Song Alexandre Souvorov Victor Solovyev Zheng Wei Charles A Whittaker Kim Worley K James Durbin Yufeng Shen Olivier Fedrigo David Garfield Ralph Haygood Alexander Primus Rahul Satija Tonya Severson Manuel L Gonzalez-Garay Andrew R Jackson Aleksandar Milosavljevic Mark Tong Christopher E Killian Brian T Livingston Fred H Wilt Nikki Adams Robert Bellé Seth Carbonneau Rocky Cheung Patrick Cormier Bertrand Cosson Jenifer Croce Antonio Fernandez-Guerra Anne-Marie Genevière Manisha Goel Hemant Kelkar Julia Morales Odile Mulner-Lorillon Anthony J Robertson Jared V Goldstone Bryan Cole David Epel Bert Gold Mark E Hahn Meredith Howard-Ashby Mark Scally John J Stegeman Erin L Allgood Jonah Cool Kyle M Judkins Shawn S McCafferty Ashlan M Musante Robert A Obar Amanda P Rawson Blair J Rossetti Ian R Gibbons Matthew P Hoffman Andrew Leone Sorin Istrail Stefan C Materna Manoj P Samanta Viktor Stolc Waraporn Tongprasit Qiang Tu Karl-Frederik Bergeron Bruce P Brandhorst James Whittle Kevin Berney David J Bottjer Cristina Calestani Kevin Peterson Elly Chow Qiu Autumn Yuan Eran Elhaik Dan Graur Justin T Reese Ian Bosdet Shin Heesun Marco A Marra Jacqueline Schein Michele K Anderson Virginia Brockton Katherine M Buckley Avis H Cohen Sebastian D Fugmann Taku Hibino Mariano Loza-Coll Audrey J Majeske Cynthia Messier Sham V Nair Zeev Pancer David P Terwilliger Cavit Agca Enrique Arboleda Nansheng Chen Allison M Churcher F Hallböök Glen W Humphrey Mohammed M Idris Takae Kiyama Shuguang Liang Dan Mellott Xiuqian Mu Greg Murray Robert P Olinski Florian Raible Matthew Rowe John S Taylor Kristin Tessmar-Raible D Wang Karen H Wilson Shunsuke Yaguchi Terry Gaasterland Blanca E Galindo Herath J Gunaratne Celina Juliano Masashi Kinukawa Gary W Moy Anna T Neill Mamoru Nomura Michael Raisch Anna Reade Michelle M Roux Jia L Song Yi-Hsien Su Ian K Townley Ekaterina Voronina Julian L Wong Gabriele Amore Margherita Branno Euan R Brown Vincenzo Cavalieri Véronique Duboc Louise Duloquin Constantin Flytzanis Christian Gache François Lapraz Thierry Lepage Annamaria Locascio Pedro Martinez Giorgio Matassi Valeria Matranga Ryan Range Francesca Rizzo Eric Röttinger Wendy Beane Cynthia Bradham Christine Byrum Tom Glenn Sofia Hussain Gerard Manning Esther Miranda Rebecca Thomason Katherine Walton Athula Wikramanayke Shu-Yu Wu Ronghui Xu C Titus Brown Lili Chen Rachel F Gray Pei Yun Lee Jongmin Nam Paola Oliveri Joel Smith Donna Muzny Stephanie Bell Joseph Chacko Andrew Cree Stacey Curry Clay Davis Huyen Dinh Shannon Dugan-Rocha Jerry Fowler Rachel Gill Cerrissa Hamilton Judith Hernandez Sandra Hines Jennifer Hume Laronda Jackson Angela Jolivet Christie Kovar Sandra Lee Lora Lewis George Miner Margaret Morgan Lynne V Nazareth Geoffrey Okwuonu David Parker Ling-Ling Pu Rachel Thorn Rita Wright

Science 2006 Nov;314(5801):941-52

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http://dx.doi.org/10.1126/science.1133609DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3159423PMC
November 2006

Global identification of noncoding RNAs in Saccharomyces cerevisiae by modulating an essential RNA processing pathway.

Proc Natl Acad Sci U S A 2006 Mar 6;103(11):4192-7. Epub 2006 Mar 6.

Genome Research Facility, National Aeronautics and Space Administration Ames Research Center, Moffet Field, CA 94035, USA.

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http://www.pnas.org/cgi/doi/10.1073/pnas.0507669103
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http://dx.doi.org/10.1073/pnas.0507669103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1389707PMC
March 2006

Genome-wide transcription analyses in rice using tiling microarrays.

Nat Genet 2006 Jan 20;38(1):124-9. Epub 2005 Dec 20.

National Institute of Biological Sciences, Zhongguancun Life Science Park, Beijing 102206, China.

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http://dx.doi.org/10.1038/ng1704DOI Listing
January 2006

A pilot study of transcription unit analysis in rice using oligonucleotide tiling-path microarray.

Plant Mol Biol 2005 Sep;59(1):137-49

Department of Molecular Cellular and Developmental Biology, Yale University, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1007/s11103-005-6164-5DOI Listing
September 2005

Genome-wide transcriptional analysis of flagellar regeneration in Chlamydomonas reinhardtii identifies orthologs of ciliary disease genes.

Proc Natl Acad Sci U S A 2005 Mar 28;102(10):3703-7. Epub 2005 Feb 28.

Genome Research Facility, National Aeronautic and Space Administration, Ames Research Center, Moffett Field, CA 94035, USA.

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http://dx.doi.org/10.1073/pnas.0408358102DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC553310PMC
March 2005

Global identification of human transcribed sequences with genome tiling arrays.

Science 2004 Dec 11;306(5705):2242-6. Epub 2004 Nov 11.

Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06520-8103, USA.

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http://www.sciencemag.org/cgi/doi/10.1126/science.1103388
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http://dx.doi.org/10.1126/science.1103388DOI Listing
December 2004

A gene expression map for the euchromatic genome of Drosophila melanogaster.

Science 2004 Oct;306(5696):655-60

Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1126/science.1101312DOI Listing
October 2004

Characterization of synthetic DNA bar codes in Saccharomyces cerevisiae gene-deletion strains.

Proc Natl Acad Sci U S A 2004 Jul 16;101(30):11046-51. Epub 2004 Jul 16.

Stanford Genome Technology Center, 855 California Avenue, Palo Alto, CA 94304, USA.

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http://dx.doi.org/10.1073/pnas.0403672101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC491991PMC
July 2004