Wanding Zhou

Wanding Zhou

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Wanding Zhou

Wanding Zhou

Publications by authors named "Wanding Zhou"

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32Publications

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Mother-child transmission of epigenetic information by tunable polymorphic imprinting.

Proc Natl Acad Sci U S A 2018 12 3;115(51):E11970-E11977. Epub 2018 Dec 3.

Center for Epigenetics, Van Andel Research Institute, Grand Rapids, MI 49503;

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http://dx.doi.org/10.1073/pnas.1815005115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6304996PMC
December 2018

SeSAMe: reducing artifactual detection of DNA methylation by Infinium BeadChips in genomic deletions.

Nucleic Acids Res 2018 11;46(20):e123

Center for Epigenetics, Van Andel Research Institute, 333 Bostwick Ave., N.E., Grand Rapids, MI 49503 USA.

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https://academic.oup.com/nar/advance-article/doi/10.1093/nar
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http://dx.doi.org/10.1093/nar/gky691DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6237738PMC
November 2018

Switching roles for DNA and histone methylation depend on evolutionary ages of human endogenous retroviruses.

Genome Res 2018 08 3;28(8):1147-1157. Epub 2018 Jul 3.

Van Andel Research Institute, Grand Rapids, Michigan 49503, USA.

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http://dx.doi.org/10.1101/gr.234229.118DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6071641PMC
August 2018

Syntenin-targeted peptide blocker inhibits progression of cancer cells.

Eur J Med Chem 2018 Jun 19;154:354-366. Epub 2018 May 19.

Clinical and Translational Research Center, Shanghai First Maternity and Infant Hospital, Tongji University School of Medicine, Shanghai, China; Institute for Advanced Study, Tongji University, Shanghai, China. Electronic address:

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http://dx.doi.org/10.1016/j.ejmech.2018.05.015DOI Listing
June 2018

DNA methylation loss in late-replicating domains is linked to mitotic cell division.

Nat Genet 2018 04 2;50(4):591-602. Epub 2018 Apr 2.

Center for Bioinformatics and Functional Genomics, Cedars-Sinai Medical Center, Los Angeles, CA, USA.

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http://dx.doi.org/10.1038/s41588-018-0073-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5893360PMC
April 2018

Comprehensive characterization, annotation and innovative use of Infinium DNA methylation BeadChip probes.

Nucleic Acids Res 2017 02;45(4):e22

Center for Epigenetics, Van Andel Research Institute, 333 Bostwick Ave NE, Grand Rapids, MI 49503, USA.

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http://dx.doi.org/10.1093/nar/gkw967DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5389466PMC
February 2017

novoBreak: local assembly for breakpoint detection in cancer genomes.

Nat Methods 2017 01 28;14(1):65-67. Epub 2016 Nov 28.

Department of Bioinformatics and Computational Biology, The University of Texas Maryland Anderson Cancer Center, Houston, Texas, USA.

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http://dx.doi.org/10.1038/nmeth.4084DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5199621PMC
January 2017

Comprehensive evaluation of extracellular small RNA isolation methods from serum in high throughput sequencing.

BMC Genomics 2017 01 7;18(1):50. Epub 2017 Jan 7.

Department of Surgery, Vanderbilt University, MRBIV 8465A Langford Hall, 2213 Garland Ave, Nashville, TN, 37232, USA.

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http://dx.doi.org/10.1186/s12864-016-3470-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5219650PMC
January 2017

Hotspot mutations delineating diverse mutational signatures and biological utilities across cancer types.

BMC Genomics 2016 06 23;17 Suppl 2:394. Epub 2016 Jun 23.

Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA.

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http://dx.doi.org/10.1186/s12864-016-2727-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4928158PMC
June 2016

TransVar: a multilevel variant annotator for precision genomics.

Nat Methods 2015 Nov;12(11):1002-3

Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.

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http://dx.doi.org/10.1038/nmeth.3622DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4772859PMC
November 2015

An integrated map of structural variation in 2,504 human genomes.

Nature 2015 Oct;526(7571):75-81

European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Meyerhofstr. 1, 69117 Heidelberg, Germany.

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http://dx.doi.org/10.1038/nature15394DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4617611PMC
October 2015

ClinSeK: a targeted variant characterization framework for clinical sequencing.

Genome Med 2015 31;7(1):34. Epub 2015 Mar 31.

Department of Bioinformatics and Computational Biology, the University of Texas MD Anderson Cancer Center, Houston, TX 77030 USA.

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http://dx.doi.org/10.1186/s13073-015-0155-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4410453PMC
April 2015

Towards accurate characterization of clonal heterogeneity based on structural variation.

BMC Bioinformatics 2014 Sep 8;15:299. Epub 2014 Sep 8.

Department of Bioinformatics and Computational Biology, The University of Texas M,D, Anderson Cancer Center, 1515 Holcombe Blvd, Houston, TX 77030, USA.

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http://dx.doi.org/10.1186/1471-2105-15-299DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4165998PMC
September 2014

Modeling integrated cellular machinery using hybrid Petri-Boolean networks.

PLoS Comput Biol 2013 7;9(11):e1003306. Epub 2013 Nov 7.

Department of Computer Science, Rice University, Houston, Texas, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1003306DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3820535PMC
July 2014

The involvement of NADPH oxidase-mediated ROS in cytokine secretion from macrophages induced by Mycobacterium tuberculosis ESAT-6.

Inflammation 2014 Jun;37(3):880-92

Department of Immunology, Tongji University School of Medicine, Medical Research Building, Rm F509, 1239 Siping Road, Shanghai, 200092, China.

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http://dx.doi.org/10.1007/s10753-013-9808-7DOI Listing
June 2014

Bias from removing read duplication in ultra-deep sequencing experiments.

Bioinformatics 2014 04 2;30(8):1073-1080. Epub 2014 Jan 2.

Department of Bioinformatics and Computational Biology, Department of Systems Biology, Institute of Personalized Cancer Therapy and Department of Investigational Cancer Therapy, The University of Texas MD Anderson Cancer Center, Houston TX 77030, USA.

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http://dx.doi.org/10.1093/bioinformatics/btt771DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3982159PMC
April 2014

Quantifying and assessing the effect of chemical symmetry in metabolic pathways.

J Chem Inf Model 2012 Oct 28;52(10):2684-96. Epub 2012 Sep 28.

Department of Bioengineering, Rice University, Houston, Texas 77005, USA.

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http://dx.doi.org/10.1021/ci300259uDOI Listing
October 2012

Convergent evolution of modularity in metabolic networks through different community structures.

BMC Evol Biol 2012 Sep 14;12:181. Epub 2012 Sep 14.

Department of Bioengineering, Rice University, Houston, TX, USA.

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http://dx.doi.org/10.1186/1471-2148-12-181DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3534581PMC
September 2012

The strength of chemical linkage as a criterion for pruning metabolic graphs.

Bioinformatics 2011 Jul 5;27(14):1957-63. Epub 2011 May 5.

Department of Bioengineering, Rice University, Houston, TX, USA.

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http://dx.doi.org/10.1093/bioinformatics/btr271DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3129522PMC
July 2011

Properties of metabolic graphs: biological organization or representation artifacts?

BMC Bioinformatics 2011 May 4;12:132. Epub 2011 May 4.

Department of Bioengineering, Rice University, Houston, Texas, USA.

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http://dx.doi.org/10.1186/1471-2105-12-132DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3098788PMC
May 2011