Publications by authors named "Vladimir Sládek"

41Publications

Weak O binding and strong HO binding at the non-heme diiron center of trypanosome alternative oxidase.

Biochim Biophys Acta Bioenerg 2020 Dec 29;1862(4):148356. Epub 2020 Dec 29.

Center for Computational Sciences, University of Tsukuba, Tennodai 1-1-1, Tsukuba, Ibaraki 305-8577, Japan.

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December 2020

Non-destructive lock-picking of a historical treasure chest by means of X-ray computed tomography.

PLoS One 2020 6;15(7):e0235316. Epub 2020 Jul 6.

Central European Institute of Technology, Brno University of Technology (CEITEC BUT), Brno, Czech Republic.

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September 2020

The Meshless Analysis of Scale-Dependent Problems for Coupled Fields.

Materials (Basel) 2020 Jun 2;13(11). Epub 2020 Jun 2.

School of Engineering and Materials Sciences, Queen Mary University of London, Mile End, London E14NS, UK.

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June 2020

Ab initio relativistic potential energy surfaces of benzene-Xe complex with application to intermolecular vibrations.

J Chem Phys 2020 Mar;152(11):114116

Faculty of Chemistry, Adam Mickiewicz University, Umultowska 89b, 61-614 Poznań, Poland.

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March 2020

Protein Dynamics and the Folding Degree.

J Chem Inf Model 2020 03 24;60(3):1559-1567. Epub 2020 Feb 24.

Center for Computational Sciences, University of Tsukuba, Tennodai 1-1-1, Tsukuba, Ibaraki 305-8577, Japan.

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March 2020

Characterizing Protein-Protein Interactions with the Fragment Molecular Orbital Method.

Methods Mol Biol 2020 ;2114:187-205

Research Center for Computational Design of Advanced Functional Materials (CD-FMat), National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki, Japan.

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January 2020

Dehydration and persistence hunting in Homo erectus.

J Hum Evol 2020 01 23;138:102682. Epub 2019 Nov 23.

Department of Anthropology and Human Genetics, Charles University, Prague, 12800, Czech Republic.

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January 2020

Nontargeted Parallel Cascade Selection Molecular Dynamics Based on a Nonredundant Selection Rule for Initial Structures Enhances Conformational Sampling of Proteins.

J Chem Inf Model 2019 12 21;59(12):5198-5206. Epub 2019 Nov 21.

Center for Computational Sciences , University of Tsukuba 1-1-1 Tennodai , Tsukuba , Ibaraki 305-8577 , Japan.

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December 2019

Nontargeted Parallel Cascade Selection Molecular Dynamics Using Time-Localized Prediction of Conformational Transitions in Protein Dynamics.

J Chem Theory Comput 2019 Sep 27;15(9):5144-5153. Epub 2019 Aug 27.

Center for Computational Sciences , University of Tsukuba , 1-1-1 Tennodai , Tsukuba , Ibaraki 305-8577 , Japan.

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September 2019

Error in the estimation of periosteal and endosteal contours from micro-CT scans for nonadult tibiae and humeri.

Am J Phys Anthropol 2019 10 19;170(2):275-294. Epub 2019 Jul 19.

Central European Institute of Technology, Brno, Czech Republic.

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October 2019

Structural Changes of the Trinuclear Copper Center in Bilirubin Oxidase upon Reduction.

Molecules 2018 Dec 26;24(1). Epub 2018 Dec 26.

Department of Chemistry, Graduate School of Science, Tohoku University, 6-3 Aoba, Aramaki, Aoba-ku, Sendai, Miyagi 980-8578, Japan.

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December 2018

Development of an Analysis Toolkit, AnalysisFMO, to Visualize Interaction Energies Generated by Fragment Molecular Orbital Calculations.

J Chem Inf Model 2019 01 20;59(1):25-30. Epub 2018 Dec 20.

Department of Physics, Graduate School of Pure and Applied Sciences , University of Tsukuba , 1-1-1 Tennodai , Tsukuba , Ibaraki 305-8571 , Japan.

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January 2019

Protein Residue Networks from Energetic and Geometric Data: Are They Identical?

J Chem Theory Comput 2018 Dec 30;14(12):6623-6631. Epub 2018 Nov 30.

Center for Computational Sciences , University of Tsukuba , Tennodai 1-1-1 , Tsukuba, Ibaraki 305-8577 , Japan.

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December 2018

The effect of hydrochloric acid on microstructure of porcine (Sus scrofa domesticus) cortical bone tissue.

Forensic Sci Int 2018 Oct 3;291:260-271. Epub 2018 Sep 3.

Faculty of Science, Charles University, Viničná 7, 128 43 Prague 2, Czechia.

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October 2018

Population specificity of sex estimation from vertebrae.

Forensic Sci Int 2018 Oct 25;291:279.e1-279.e12. Epub 2018 Aug 25.

Department of Anthropology and Human Genetics, Faculty of Science, Charles University, Viničná 7, 12843 Praha 2, Prague, Czech Republic.

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October 2018

Molecular association model of PPARα and its new specific and efficient ligand, pemafibrate: Structural basis for SPPARMα.

Biochem Biophys Res Commun 2018 05 22;499(2):239-245. Epub 2018 Mar 22.

Department of Internal Medicine (Endocrinology and Metabolism), Faculty of Medicine, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8575, Japan; AMED-CREST, Japan Agency for Medical Research and Development, Chiyoda, Tokyo 100-0004, Japan; International Institute for Integrative Sleep Medicine (WPI-IIIS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8575, Japan; Life Science Center, Tsukuba Advanced Research Alliance (TARA), University of Tsukuba, Tsukuba 305-8577, Japan. Electronic address:

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May 2018

N-Benzyl Substitution of Polyhydroxypyrrolidines: The Way to Selective Inhibitors of Golgi α-Mannosidase II.

ChemMedChem 2018 02 6;13(4):373-383. Epub 2018 Feb 6.

Institute of Chemistry, Center for Glycomics, Slovak Academy of Sciences, Dúbravská cesta 9, 845 38, Bratislava, Slovakia.

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February 2018

Can we refine body mass estimations based on femoral head breadth?

J Hum Evol 2018 02 7;115:112-121. Epub 2017 Dec 7.

Department of Anthropology, Natural History Museum, Vienna 1010, Austria.

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February 2018

Benchmark CCSD-SAPT study of rare gas dimers with comparison to MP-SAPT and DFT-SAPT.

J Chem Phys 2017 Nov;147(17):174103

Institute of Chemistry-Centre for Glycomics, Slovak Academy of Sciences, 845 38 Bratislava, Slovakia.

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November 2017

First-Principles Interaction Analysis Assessment of the Manganese Cation in the Catalytic Activity of Glycosyltransferases.

J Phys Chem B 2017 06 15;121(25):6148-6162. Epub 2017 Jun 15.

Institute of Chemistry, Centre for Glycomics, Slovak Academy of Sciences , 84538 Bratislava, Slovakia.

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June 2017

Body size and lower limb posture during walking in humans.

PLoS One 2017 13;12(2):e0172112. Epub 2017 Feb 13.

Department of Anthropology and Human Genetics, Faculty of Science, Charles University, Prague, Czech Republic.

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August 2017

Impact of Non-Invasively Induced Motor Deficits on Tibial Cortical Properties in Mutant Lurcher Mice.

PLoS One 2016 7;11(7):e0158877. Epub 2016 Jul 7.

Department of Anthropology and Human Genetics, Faculty of Science, Charles University, Prague, Czech Republic.

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July 2017

Unified analytical expressions of the three-dimensional fundamental solutions and their derivatives for linear elastic anisotropic materials.

Proc Math Phys Eng Sci 2016 Feb;472(2186):20150272

Institute of Construction and Architecture, Slovak Academy of Sciences , Bratislava, Slovakia.

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February 2016

The impact of subsistence changes on humeral bilateral asymmetry in Terminal Pleistocene and Holocene Europe.

J Hum Evol 2016 Mar 29;92:37-49. Epub 2016 Jan 29.

Department of Anthropology and Human Genetics, Faculty of Science, Charles University, Prague, Czech Republic.

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March 2016

Population-specific stature estimation from long bones in the early medieval Pohansko (Czech Republic).

Am J Phys Anthropol 2015 Oct 29;158(2):312-324. Epub 2015 Jun 29.

Department of Anthropology and Human Genetics, Faculty of Science, Charles University in Prague, Czech Republic.

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October 2015

Ab initio modelling of the anomeric and exo anomeric effects in 2-methoxytetrahydropyran and 2-methoxythiane corrected for intramolecular BSSE.

Phys Chem Chem Phys 2015 Jul;17(28):18501-13

Institute of Chemistry, Slovak Academy of Sciences, SK-845 38 Bratislava, Slovakia.

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July 2015

Ab initio X(1)0(+) ground state potential curves of Pb···RG dimers (RG = He, Ne, Ar) including spin-orbit effects. Simulation of diffusion coefficients.

Phys Chem Chem Phys 2014 Sep;16(34):18519-32

Institute of Physical Chemistry and Chemical Physics, FCHPT-STU, Radlinského 9, SK - 812 37, Bratislava, Slovakia.

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September 2014

Influence of lower limb configuration on walking cost in Late Pleistocene humans.

J Hum Evol 2014 Feb 28;67:19-32. Epub 2014 Jan 28.

Department of Anthropology and Human Genetics, Faculty of Science, Charles University in Prague, Viničná 7, 128 43 Prague 2, Czech Republic.

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February 2014

Skull shape asymmetry and the socioeconomic structure of an early medieval central European society.

Am J Phys Anthropol 2013 Mar 3;150(3):349-64. Epub 2013 Jan 3.

Department of Anthropology and Human Genetics, Faculty of Science, Charles University in Prague, 12800 Prague 2, Czech Republic.

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March 2013

Stature and body mass estimation from skeletal remains in the European Holocene.

Am J Phys Anthropol 2012 Aug 28;148(4):601-17. Epub 2012 May 28.

Center for Functional Anatomy and Evolution, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.

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August 2012

Measuring human remains in the field: Grid technique, total station, or MicroScribe?

Forensic Sci Int 2012 Sep 5;221(1-3):16-22. Epub 2012 May 5.

Department of Anthropology and Human Genetics, Faculty of Science, Charles University in Prague, Viničná 7, 128 43, Czech Republic.

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September 2012

Ab initio calculation of structure and transport properties of He…X (X = Zn, Cd, Hg) van der Waals complexes.

J Comput Chem 2012 Mar 6;33(7):767-78. Epub 2012 Jan 6.

Institute of Physical Chemistry and Chemical Physics, Slovak University of Technology, Bratislava, Slovakia.

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March 2012

Modeling neolithic dispersal in central Europe: demographic implications.

Am J Phys Anthropol 2011 Sep;146(1):104-15

Department of Anthropology, University of West Bohemia, 306 14 Pilsen, Czech Republic.

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September 2011

Technical note: The effect of midshaft location on the error ranges of femoral and tibial cross-sectional parameters.

Am J Phys Anthropol 2010 Feb;141(2):325-32

Department of Anthropology and Human Genetics, Charles University in Prague, Czech Republic.

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February 2010

Human manipulative behavior in the Central European Late Eneolithic and Early Bronze Age: humeral bilateral asymmetry.

Am J Phys Anthropol 2007 May;133(1):669-81

Katedra Antropologie, Fakulta Filozofická, Západoceská Univerzita v Plzni, Tylova 18, 30125 Plzen, Czech Republic.

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May 2007

Body size, body proportions, and mobility in the Tyrolean "Iceman".

J Hum Evol 2006 Jul 20;51(1):91-101. Epub 2006 Mar 20.

Center for Functional Anatomy and Evolution, Johns Hopkins University School of Medicine, 1830 E. Monument St., Baltimore, MD 21205, USA.

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July 2006

Mobility in Central European Late Eneolithic and Early Bronze Age: femoral cross-sectional geometry.

Am J Phys Anthropol 2006 Jul;130(3):320-32

Ustav biologie obratlovců, Akademie ved CR, 60365 Brno, Czech Republic.

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July 2006

Morphological affinities of the Sal'a 1 frontal bone.

J Hum Evol 2002 Dec;43(6):787-815

Ustav biologie obratlovců, Akademie ved CR, Kvetná 8, 603 65, Brno, Czech Republic.

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December 2002