Viviane Praz

Viviane Praz

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Viviane Praz

Viviane Praz

Publications by authors named "Viviane Praz"

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HCF-2 inhibits cell proliferation and activates differentiation-gene expression programs.

Nucleic Acids Res 2019 06;47(11):5792-5808

Center for Integrative Genomics, University of Lausanne, 1015 Lausanne, Switzerland.

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http://dx.doi.org/10.1093/nar/gkz307DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6582346PMC
June 2019

Differential regulation of RNA polymerase III genes during liver regeneration.

Nucleic Acids Res 2019 02;47(4):1786-1796

Center for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, 1015 Lausanne, Switzerland.

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http://dx.doi.org/10.1093/nar/gky1282DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6393285PMC
February 2019

Cycles of gene expression and genome response during mammalian tissue regeneration.

Epigenetics Chromatin 2018 09 12;11(1):52. Epub 2018 Sep 12.

Center for Integrative Genomics, Génopode, University of Lausanne, 1015, Lausanne, Switzerland.

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http://dx.doi.org/10.1186/s13072-018-0222-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6134763PMC
September 2018

Mechanism of selective recruitment of RNA polymerases II and III to snRNA gene promoters.

Genes Dev 2018 05 21;32(9-10):711-722. Epub 2018 May 21.

Center for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, 1015 Lausanne, Switzerland.

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http://dx.doi.org/10.1101/gad.314245.118DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6004067PMC
May 2018

Diurnal regulation of RNA polymerase III transcription is under the control of both the feeding-fasting response and the circadian clock.

Genome Res 2017 06 24;27(6):973-984. Epub 2017 Mar 24.

Center for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, 1015 Lausanne, Switzerland.

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http://dx.doi.org/10.1101/gr.217521.116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5453330PMC
June 2017

Transcriptional interference by RNA polymerase III affects expression of the gene.

Genes Dev 2017 02 13;31(4):413-421. Epub 2017 Mar 13.

Center for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, 1015 Lausanne, Switzerland.

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http://dx.doi.org/10.1101/gad.293324.116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5358760PMC
February 2017

Human MAF1 targets and represses active RNA polymerase III genes by preventing recruitment rather than inducing long-term transcriptional arrest.

Genome Res 2016 05 3;26(5):624-35. Epub 2016 Mar 3.

Center for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, 1015 Lausanne, Switzerland;

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http://dx.doi.org/10.1101/gr.201400.115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4864463PMC
May 2016

Quantifying ChIP-seq data: a spiking method providing an internal reference for sample-to-sample normalization.

Genome Res 2014 Jul 7;24(7):1157-68. Epub 2014 Apr 7.

Bioinformatics Core Facility, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland; Department of Oncology and the Ludwig Center for Cancer Research, Faculty of Biology and Medicine, University of Lausanne, 1011 Lausanne, Switzerland.

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http://genome.cshlp.org/cgi/doi/10.1101/gr.168260.113
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http://dx.doi.org/10.1101/gr.168260.113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4079971PMC
July 2014

Gene duplication and neofunctionalization: POLR3G and POLR3GL.

Genome Res 2014 Jan 9;24(1):37-51. Epub 2013 Oct 9.

Center for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, 1015 Lausanne, Switzerland;

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http://genome.cshlp.org/cgi/doi/10.1101/gr.161570.113
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http://dx.doi.org/10.1101/gr.161570.113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3875860PMC
January 2014

Genomic study of RNA polymerase II and III SNAPc-bound promoters reveals a gene transcribed by both enzymes and a broad use of common activators.

PLoS Genet 2012 15;8(11):e1003028. Epub 2012 Nov 15.

Center for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, Lausanne, Switzerland.

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http://dx.doi.org/10.1371/journal.pgen.1003028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3499247PMC
May 2013

Widespread occurrence of non-canonical transcription termination by human RNA polymerase III.

Nucleic Acids Res 2011 Jul 17;39(13):5499-512. Epub 2011 Mar 17.

Dipartimento di Biochimica e Biologia Molecolare, Università degli Studi di Parma, Viale G.P. Usberti 23/A, 43100 Parma, Italy.

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http://dx.doi.org/10.1093/nar/gkr074DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3141230PMC
July 2011

Defining the RNA polymerase III transcriptome: Genome-wide localization of the RNA polymerase III transcription machinery in human cells.

Genome Res 2010 Jun 22;20(6):710-21. Epub 2010 Apr 22.

Center for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, Lausanne 1015, Switzerland.

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http://dx.doi.org/10.1101/gr.101337.109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2877568PMC
June 2010

Can survival prediction be improved by merging gene expression data sets?

PLoS One 2009 Oct 23;4(10):e7431. Epub 2009 Oct 23.

Swiss Institute for Experimental Cancer Research (ISREC), Swiss Federal Institute of Technology (EPFL), School of Life Sciences, EPFL SV ISREC, Lausanne, Switzerland.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0007431PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2761544PMC
October 2009

CleanEx: new data extraction and merging tools based on MeSH term annotation.

Nucleic Acids Res 2009 Jan;37(Database issue):D880-4

ISREC, Swiss Institute of Bioinformatics, Boveresses 155, Epalinges, VD 1066, Switzerland.

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http://dx.doi.org/10.1093/nar/gkn878DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686468PMC
January 2009

EPD in its twentieth year: towards complete promoter coverage of selected model organisms.

Nucleic Acids Res 2006 Jan;34(Database issue):D82-5

Swiss Institute of Bioinformatics, Chemin des Boveresses 155, CH-1066 Epalinges, Switzerland.

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http://dx.doi.org/10.1093/nar/gkj146DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347508PMC
January 2006

The Eukaryotic Promoter Database EPD: the impact of in silico primer extension.

Nucleic Acids Res 2004 Jan;32(Database issue):D82-5

Swiss Institute of Bioinformatics, Ch. des Boveresses 155, 1066 Epalinges s/Lausanne, Switzerland.

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http://dx.doi.org/10.1093/nar/gkh122DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC308856PMC
January 2004

CleanEx: a database of heterogeneous gene expression data based on a consistent gene nomenclature.

Nucleic Acids Res 2004 Jan;32(Database issue):D542-7

Swiss Insitiute of Bioinformatics, Ch. des Boveresses 155, 1066 Epalinges s/Lausanne, Switzerland.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkh107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC308841PMC
January 2004

Signal search analysis server.

Nucleic Acids Res 2003 Jul;31(13):3618-20

ISREC Swiss Institute for Experimental Cancer Research, Ch. des Boveresses 155, 1066 Epalinges s/ Lausanne, VD, Switzerland.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC169017PMC
http://dx.doi.org/10.1093/nar/gkg611DOI Listing
July 2003

The Eukaryotic Promoter Database, EPD: new entry types and links to gene expression data.

Nucleic Acids Res 2002 Jan;30(1):322-4

Swiss Institute of Bioinformatics and Swiss Institute for Experimental Cancer Research, Ch. des Boveresses 155, 1066-Epalinges s/Lausanne, Switzerland.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC99099PMC
http://dx.doi.org/10.1093/nar/30.1.322DOI Listing
January 2002