Vinod Scaria

Vinod Scaria

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Vinod Scaria

Publications by authors named "Vinod Scaria"

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Investigating Coronary Artery Disease methylome through targeted bisulfite sequencing.

Gene 2019 Sep 6;721:144107. Epub 2019 Sep 6.

CSIR-Institute of Genomics and Integrative Biology, Mathura Road, New Delhi 110025, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India. Electronic address:

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http://dx.doi.org/10.1016/j.gene.2019.144107DOI Listing
September 2019

Methods for Annotation and Validation of Circular RNAs from RNAseq Data.

Methods Mol Biol 2019 ;1912:55-76

G.N. Ramachandran Knowledge Center for Bioinformatics, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi, India.

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http://dx.doi.org/10.1007/978-1-4939-8982-9_3DOI Listing
June 2019

Methods to Study Long Noncoding RNA Expression and Dynamics in Zebrafish Using RNA Sequencing.

Methods Mol Biol 2019 ;1912:77-110

Genomics and Molecular Medicine, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi, India.

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http://link.springer.com/10.1007/978-1-4939-8982-9_4
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http://dx.doi.org/10.1007/978-1-4939-8982-9_4DOI Listing
June 2019

A novel cathepsin D mutation in 2 siblings with late infantile neuronal ceroid lipofuscinosis.

Neurol Genet 2019 Jun 11;5(3):e302. Epub 2019 Apr 11.

Department of Radiodiagnosis (J.T., M.M., V.R.R.), Government Medical College, Kozhikode, Medical College PO, Kozhikode, Kerala 673008, India; Genomics and Molecular Medicine Unit (S.K.V., R.J., A.V., A.S., S.S.), CSIR Institute of Genomics and Integrative Biology; Academy of Scientific and Innovative Research (AcSIR) (S.K.V., S.S., V.S.), CSIR-IGIB South Campus; and GN Ramachandran Knowledge Center for Genome Informatics (V.S.), CSIR Institute of Genomics and Integrative Biology, Delhi, India.

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http://dx.doi.org/10.1212/NXG.0000000000000302DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6481222PMC
June 2019

Organellar transcriptome sequencing reveals mitochondrial localization of nuclear encoded transcripts.

Mitochondrion 2019 05 24;46:59-68. Epub 2018 Feb 24.

Genomics and Molecular Medicine, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Mathura Road, Delhi 110 020, India; Academy of Scientific and Innovative Research (AcSIR), CSIR IGIB South Campus, Mathura Road, Delhi 110020, India. Electronic address:

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http://dx.doi.org/10.1016/j.mito.2018.02.007DOI Listing
May 2019

A genome-wide map of circular RNAs in adult zebrafish.

Sci Rep 2019 Mar 5;9(1):3432. Epub 2019 Mar 5.

Genomics and Molecular Medicine, CSIR Institute of Genomics and Integrative Biology, Mathura Road, Delhi, 110025, India.

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http://dx.doi.org/10.1038/s41598-019-39977-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6401160PMC
March 2019

Normative range of blood biochemical parameters in urban Indian school-going adolescents.

PLoS One 2019 7;14(3):e0213255. Epub 2019 Mar 7.

Genomics and Molecular Medicine Unit, CSIR-Institute of Genomics and Integrative Biology, New Delhi, India.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0213255PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6405124PMC
March 2019

Population-scale genomics-Enabling precision public health.

Adv Genet 2019 7;103:119-161. Epub 2018 Dec 7.

GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India; Academy of Scientific and Innovative Research (AcSIR), New Delhi, India. Electronic address:

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http://dx.doi.org/10.1016/bs.adgen.2018.09.001DOI Listing
December 2018

Diagnosis of Inherited Epidermolysis Bullosa in Resource-Limited Settings: Immunohistochemistry Revisited.

Dermatology 2017 26;233(4):326-332. Epub 2017 Oct 26.

Department of Dermatology and Venereology, All India Institute of Medical Sciences, New Delhi, India.

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http://dx.doi.org/10.1159/000478856DOI Listing
October 2018

Mitoepigenome a comprehensive resource for human mitochondrial epigenetic data.

Mitochondrion 2018 09 9;42:54-58. Epub 2017 Nov 9.

GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology, Mathura Road, Delhi 110 025, India; Academy of Scientific and Innovative Research, CSIR-IGIB South Campus, Mathura Road, Delhi 110 025, India. Electronic address:

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http://dx.doi.org/10.1016/j.mito.2017.11.001DOI Listing
September 2018

Incidental and clinically actionable genetic variants in 1005 whole exomes and genomes from Qatar.

Mol Genet Genomics 2018 Aug 20;293(4):919-929. Epub 2018 Mar 20.

GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology(CSIR-IGIB), Mathura Road, Delhi, 110025, India.

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http://dx.doi.org/10.1007/s00438-018-1431-8DOI Listing
August 2018

Rapid Transition of Facial Features from Early to Mid - Adolescence in Autosomal Dominant Hyper IgE Syndrome with a STAT3 Variation.

Indian J Pediatr 2018 07 24;85(7):595-596. Epub 2018 Jan 24.

CSIR Institute of Genomics and Integrative Biology, Kerala, India.

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http://dx.doi.org/10.1007/s12098-017-2603-yDOI Listing
July 2018

Pharmacogenomic survey of Qatari populations using whole-genome and exome sequences.

Pharmacogenomics J 2018 07 3;18(4):590-600. Epub 2018 May 3.

GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Mathura Road, Delhi, 110020, India.

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http://dx.doi.org/10.1038/s41397-018-0022-8DOI Listing
July 2018

Familial Hypertrophic Cardiomyopathy - Identification of cause and risk stratification through exome sequencing.

Gene 2018 Jun 21;660:151-156. Epub 2018 Mar 21.

Dept. of Anthropology, Delhi University, Delhi, India; Genome Foundation, Hyderabad, India; Dept. of Genetics, Osmania University, Hyderabad, India. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S03781119183030
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http://dx.doi.org/10.1016/j.gene.2018.03.062DOI Listing
June 2018

Chemical and genetic rescue of an ep300 knockdown model for Rubinstein Taybi Syndrome in zebrafish.

Biochim Biophys Acta Mol Basis Dis 2018 Apr 31;1864(4 Pt A):1203-1215. Epub 2018 Jan 31.

CSIR-Institute of Genomics & Integrative Biology, South Campus, New Delhi 110025, India; Academy of Scientific and Innovative Research (AcSIR), New Delhi 110025, India. Electronic address:

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http://dx.doi.org/10.1016/j.bbadis.2018.01.029DOI Listing
April 2018

Distinct and Modular Organization of Protein Interacting Sites in Long Non-coding RNAs.

Front Mol Biosci 2018 4;5:27. Epub 2018 Apr 4.

GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology, New Delhi, India.

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http://dx.doi.org/10.3389/fmolb.2018.00027DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5893854PMC
April 2018

RNA secondary structure profiling in zebrafish reveals unique regulatory features.

BMC Genomics 2018 02 15;19(1):147. Epub 2018 Feb 15.

Genomics and Molecular Medicine, CSIR Institute of Genomics and Integrative Biology, Sukhdev Vihar, Mathura Road, New Delhi, 110025, India.

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https://bmcgenomics.biomedcentral.com/articles/10.1186/s1286
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http://dx.doi.org/10.1186/s12864-018-4497-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5815192PMC
February 2018

Machine Learning Approaches Toward Building Predictive Models for Small Molecule Modulators of miRNA and Its Utility in Virtual Screening of Molecular Databases.

Methods Mol Biol 2017 ;1517:155-168

GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology, Mall Road, Delhi, 110007, India.

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http://dx.doi.org/10.1007/978-1-4939-6563-2_11DOI Listing
January 2018

Bronchial Epithelial Cells from Cystic Fibrosis Patients Express a Specific Long Non-coding RNA Signature upon Infection.

Front Cell Infect Microbiol 2017 29;7:218. Epub 2017 May 29.

GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative BiologyDelhi, India.

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http://dx.doi.org/10.3389/fcimb.2017.00218DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5447040PMC
January 2018

al mena: a comprehensive resource of human genetic variants integrating genomes and exomes from Arab, Middle Eastern and North African populations.

J Hum Genet 2017 Oct 22;62(10):889-894. Epub 2017 Jun 22.

GN Ramachandran Knowledge Center for Genome Informatics, CSIR-Institute of Genomics and Integrative Biology, Delhi, India.

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http://dx.doi.org/10.1038/jhg.2017.67DOI Listing
October 2017

Genome-wide computational analysis of potential long noncoding RNA mediated DNA:DNA:RNA triplexes in the human genome.

J Transl Med 2017 09 2;15(1):186. Epub 2017 Sep 2.

CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Mathura Road, Delhi, 110020, India.

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http://dx.doi.org/10.1186/s12967-017-1282-9DOI Listing
September 2017

From genomes to genomic medicine: enabling personalized and precision medicine in the Middle East.

Per Med 2017 09 1;14(5):377-382. Epub 2017 Sep 1.

GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics & Integrative Biology, Mathura Road, Delhi 110 025, India.

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http://dx.doi.org/10.2217/pme-2017-0048DOI Listing
September 2017

Computational Analysis and Predictive Cheminformatics Modeling of Small Molecule Inhibitors of Epigenetic Modifiers.

PLoS One 2016 13;11(9):e0083032. Epub 2016 Sep 13.

GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi, India.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0083032PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5021286PMC
August 2017

Landscape of warfarin and clopidogrel pharmacogenetic variants in Qatari population from whole exome datasets.

Pharmacogenomics 2016 Nov 21;17(17):1891-1901. Epub 2016 Oct 21.

GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics & Integrative Biology, Mathura Road, New Delhi 110025, India.

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http://dx.doi.org/10.2217/pgs-2016-0130DOI Listing
November 2016

Navigating the dynamic landscape of long noncoding RNA and protein-coding gene annotations in GENCODE.

Hum Genomics 2016 10 28;10(1):35. Epub 2016 Oct 28.

GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Mathura Road, Delhi, 110 025, India.

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http://dx.doi.org/10.1186/s40246-016-0090-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5084464PMC
October 2016

Case Report: Whole exome sequencing reveals a novel frameshift deletion mutation p.G2254fs in COL7A1 associated with autosomal recessive dystrophic epidermolysis bullosa.

F1000Res 2016 17;5:900. Epub 2016 May 17.

GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology, Delhi, India; Academy of Scientific and Innovative Research, CSIR-IGIB South Campus, Delhi, India.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4926754PMC
http://dx.doi.org/10.12688/f1000research.8380.2DOI Listing
August 2016

Rescue of neural crest-derived phenotypes in a zebrafish CHARGE model by Sox10 downregulation.

Hum Mol Genet 2016 08 13;25(16):3539-3554. Epub 2016 Jul 13.

CSIR-Institute of Genomics & Integrative Biology, South Campus, New Delhi, 110025, India

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http://dx.doi.org/10.1093/hmg/ddw198DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5179949PMC
August 2016

Anti-HIV microRNA expression in a novel Indian cohort.

Sci Rep 2016 06 20;6:28279. Epub 2016 Jun 20.

CSIR-Institute of Genomics and Integrative Biology (CSIR-IGIB), Mathura Road, Delhi 110 020, India.

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http://dx.doi.org/10.1038/srep28279DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4913240PMC
June 2016

Screening currency notes for microbial pathogens and antibiotic resistance genes using a shotgun metagenomic approach.

PLoS One 2015 2;10(6):e0128711. Epub 2015 Jun 2.

GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Mathura Road, Delhi, 110 020, India; Academy of Scientific and Innovative Research (AcSIR), CSIR IGIB South Campus, Mathura Road, Delhi, 110020, India.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0128711PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4452720PMC
May 2016

Exome sequencing reveals a novel mutation, p.L325H, in the KRT5 gene associated with autosomal dominant Epidermolysis Bullosa Simplex Koebner type in a large family from western India.

Hum Genome Var 2014 4;1:14007. Epub 2014 Sep 4.

Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, New Delhi, India; GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology, Delhi, India.

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http://dx.doi.org/10.1038/hgv.2014.7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4785511PMC
April 2016

zflncRNApedia: A Comprehensive Online Resource for Zebrafish Long Non-Coding RNAs.

PLoS One 2015 11;10(6):e0129997. Epub 2015 Jun 11.

GN Ramachandran Knowledge Center for Genome Informatics, CSIR-Institute of Genomics and Integrative Biology, Mathura Road, Delhi, 110020, India; Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, Delhi, 110001, India.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0129997PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4466246PMC
April 2016

Computational Analysis and In silico Predictive Modeling for Inhibitors of PhoP Regulon in S. typhi on High-Throughput Screening Bioassay Dataset.

Interdiscip Sci 2016 Mar 23;8(1):95-101. Epub 2015 Aug 23.

GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), New Delhi, India.

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http://dx.doi.org/10.1007/s12539-015-0273-xDOI Listing
March 2016

Genomic variations in non-coding RNAs: Structure, function and regulation.

Genomics 2016 Mar 11;107(2-3):59-68. Epub 2016 Jan 11.

GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology, Mall Road, Delhi 110007, India; Academy of Scientific & Innovative Research (AcSIR), Anusandhan Bhawan, New Delhi 110001, India.

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http://dx.doi.org/10.1016/j.ygeno.2016.01.005DOI Listing
March 2016

Hydroxymethyl cytosine marks in the human mitochondrial genome are dynamic in nature.

Mitochondrion 2016 Mar 28;27:25-31. Epub 2016 Jan 28.

GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology, Mathura Road, Delhi 110025, India; Academy of Scientific and Innovative Research (AcSIR), CSIR-IGIB South Campus, Mathura Road, Delhi 110025, India. Electronic address:

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http://dx.doi.org/10.1016/j.mito.2016.01.003DOI Listing
March 2016

Does the buck stop with the bugs?: an overview of microbial dysbiosis in rheumatoid arthritis.

Int J Rheum Dis 2016 Jan 19;19(1):8-20. Epub 2015 Sep 19.

GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi, India.

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http://dx.doi.org/10.1111/1756-185X.12728DOI Listing
January 2016

Long noncoding RNAs could be potential key players in the pathophysiology of Sjögren's syndrome.

Int J Rheum Dis 2015 Nov 30;18(8):898-905. Epub 2015 Sep 30.

Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, Delhi, India.

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http://dx.doi.org/10.1111/1756-185X.12752DOI Listing
November 2015

Mitoepigenetics: The different shades of grey.

Mitochondrion 2015 Nov 5;25:60-6. Epub 2015 Oct 5.

GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology (CSIR IGIB), Mathura Road, Delhi, 110 020 Delhi, India; Academy of Scientific and Innovative Research (AcSIR), CSIR IGIB South Campus, Mathura Road, Delhi, 110020 Delhi, India. Electronic address:

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http://dx.doi.org/10.1016/j.mito.2015.09.003DOI Listing
November 2015

Case Report: Whole exome sequencing helps in accurate molecular diagnosis in siblings with a rare co-occurrence of paternally inherited 22q12 duplication and autosomal recessive non-syndromic ichthyosis.

F1000Res 2015 31;4:446. Epub 2015 Jul 31.

Genomics and Molecular Medicine, CSIR Institute of Genomics and Integrative Biology, Delhi, India ; Academy of Scientific and Innovative Research, Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology, Delhi, India.

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http://dx.doi.org/10.12688/f1000research.6779.1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4648218PMC
November 2015

Cheminformatics models for inhibitors of Schistosoma mansoni thioredoxin glutathione reductase.

ScientificWorldJournal 2014 25;2014:957107. Epub 2014 Nov 25.

GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology, Mall Road, Delhi 110007, India.

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http://dx.doi.org/10.1155/2014/957107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4275605PMC
October 2015

HGV&TB: a comprehensive online resource on human genes and genetic variants associated with tuberculosis.

Database (Oxford) 2014 13;2014:bau112. Epub 2014 Dec 13.

Department of Biotechnology, Delhi Technological University, Bawana Road, Delhi 110042, India, GN Ramachandran Knowledge Center for Genome Informatics, CSIR-Institute of Genomics and Integrative Biology (CSIR-IGIB), Mathura Road, Delhi 110025, India, Acharya Narendra Dev College, University of Delhi, Govindpuri, Kalkaji, New Delhi 110019, India, Council of Scientific and Industrial Research (CSIR), Anusandhan Bhawan, 2 Rafi Marg, New Delhi 110001, India and Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, New Delhi 110001, India

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http://dx.doi.org/10.1093/database/bau112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5630898PMC
July 2015

Computational approaches towards understanding human long non-coding RNA biology.

Bioinformatics 2015 Jul 15;31(14):2241-51. Epub 2015 Mar 15.

GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Mathura Road, Delhi 110020, India and GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Mathura Road, Delhi 110020, India and.

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http://dx.doi.org/10.1093/bioinformatics/btv148DOI Listing
July 2015

mit-o-matic: a comprehensive computational pipeline for clinical evaluation of mitochondrial variations from next-generation sequencing datasets.

Hum Mutat 2015 Apr;36(4):419-24

Genomics and Molecular Medicine, CSIR Institute of Genomics and Integrative Biology, Delhi, India; Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, Delhi, India.

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http://doi.wiley.com/10.1002/humu.22767
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http://dx.doi.org/10.1002/humu.22767DOI Listing
April 2015

Distinct patterns of epigenetic marks and transcription factor binding sites across promoters of sense-intronic long noncoding RNAs.

J Genet 2015 Mar;94(1):17-25

Genomics and Molecular Medicine, CSIR Institute of Genomics and Integrative Biology, Mall Road, New Delhi 110 007, India.

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March 2015

Insights into structural variations and genome rearrangements in prokaryotic genomes.

Bioinformatics 2015 Jan 4;31(1):1-9. Epub 2014 Sep 4.

GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi 110007 and Academy of Scientific & Innovative Research (AcSIR), Anusandhan Bhawan, New Delhi 110001, India GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi 110007 and Academy of Scientific & Innovative Research (AcSIR), Anusandhan Bhawan, New Delhi 110001, India.

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http://dx.doi.org/10.1093/bioinformatics/btu600DOI Listing
January 2015

Computational analysis and In-silico predictive modeling for inhibitors of PhoP regulon in S. typhi on high-throughput screening bioassay dataset.

Interdiscip Sci 2015 Jan 16. Epub 2015 Jan 16.

Department of Computer Science, Hamdard University, New Delhi, India,

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http://dx.doi.org/10.1007/s12539-014-0212-2DOI Listing
January 2015

Short stories on zebrafish long noncoding RNAs.

Zebrafish 2014 Dec;11(6):499-508

1 Genomics and Molecular Medicine, CSIR Institute of Genomics and Integrative Biology , Delhi, India .

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http://dx.doi.org/10.1089/zeb.2014.0994DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4248245PMC
December 2014

Personal genomes, participatory genomics and the anonymity-privacy conundrum.

Authors:
Vinod Scaria

J Genet 2014 Dec;93(3):917-20

GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Mall Road, New Delhi 110 007, India.

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December 2014

Joining the long shots: emerging evidence on the role of long noncoding RNAs in rheumatoid arthritis.

Authors:
Vinod Scaria

Int J Rheum Dis 2014 Nov;17(8):831-3

GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi, India; Faculty of Life Sciences, Academy of Scientific and Innovative Research (AcSIR),, Delhi, India.

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http://dx.doi.org/10.1111/1756-185X.12570DOI Listing
November 2014

Comparative analysis of human mitochondrial methylomes shows distinct patterns of epigenetic regulation in mitochondria.

Mitochondrion 2014 Sep 22;18:58-62. Epub 2014 Jul 22.

GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology, Mall Road, Delhi 110007, India; Academy of Scientific and Innovative Research (AcSIR), New Delhi, India. Electronic address:

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http://dx.doi.org/10.1016/j.mito.2014.07.007DOI Listing
September 2014

Dynamic expression of long non-coding RNAs (lncRNAs) in adult zebrafish.

PLoS One 2013 31;8(12):e83616. Epub 2013 Dec 31.

Genomics and Molecular Medicine, CSIR Institute of Genomics and Integrative Biology, Delhi, India ; Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhavan, New Delhi, India.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0083616PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3877055PMC
August 2014

tbvar: A comprehensive genome variation resource for Mycobacterium tuberculosis.

Database (Oxford) 2014 9;2014:bat083. Epub 2014 Jan 9.

CSIR Open Source Drug Discovery Unit, Anusandhan Bhawan, Delhi 110001, India; Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, Delhi 110001, India; Department of Biotechnology, Delhi Technological University, Bawana Road, Delhi 110042, India and GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Mall Road, Delhi 110007, India.

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http://dx.doi.org/10.1093/database/bat083DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3885892PMC
August 2014

The Zebrafish GenomeWiki: a crowdsourcing approach to connect the long tail for zebrafish gene annotation.

Database (Oxford) 2014 26;2014:bau011. Epub 2014 Feb 26.

CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Mall Road, Delhi 110007, India, Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, Delhi 110001, India, Acharya Narendra Dev College, Delhi University, Govindpuri, Kalkaji, New Delhi 110019, India, Dr. B. R. Ambedkar Center for Biomedical Research, University of Delhi, Delhi 110007, India, Department of Genetics, University of Delhi South Campus, Benito Juarez Road, Dhaula Kuan, New Delhi 110021, India and Mayo Clinic, Rochester, MN, USA.

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https://academic.oup.com/database/article-lookup/doi/10.1093
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http://dx.doi.org/10.1093/database/bau011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3936183PMC
August 2014

Data-mining of potential antitubercular activities from molecular ingredients of traditional Chinese medicines.

PeerJ 2014 17;2:e476. Epub 2014 Jul 17.

CSIR Open Source Drug Discovery Unit , Anusandhan Bhavan, Delhi , India.

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http://dx.doi.org/10.7717/peerj.476DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4106188PMC
August 2014

Personal genomes to precision medicine.

Authors:
Vinod Scaria

Mol Cytogenet 2014 21;7(Suppl 1 Proceedings of the International Conference on Human):I28. Epub 2014 Jan 21.

GN Ramachandran Knowledge Center for Genome Informatics, CSIR-Institute of Genomics and Integrative Biology, Mathura Road, Delhi, India.

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http://dx.doi.org/10.1186/1755-8166-7-S1-I28DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4044288PMC
June 2014

Pharmacogenetic landscape of clopidogrel in north Indians suggest distinct interpopulation differences in allele frequencies.

Pharmacogenomics 2014 Apr;15(5):643-53

Genomics & Molecular Medicine Unit, CSIR-Institute of Genomics & Integrative Biology, Mathura Road, Delhi-110 020, India.

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http://dx.doi.org/10.2217/pgs.13.241DOI Listing
April 2014

Distinct patterns of genetic variations in potential functional elements in long noncoding RNAs.

Hum Mutat 2014 Feb 25;35(2):192-201. Epub 2013 Nov 25.

GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology, Mall Road, Delhi, 110007, India; Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, Delhi, 110001, India.

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http://dx.doi.org/10.1002/humu.22472DOI Listing
February 2014

Draft Genome Sequence of Urease-Producing Sporosarcina pasteurii with Potential Application in Biocement Production.

Genome Announc 2014 Jan 30;2(1). Epub 2014 Jan 30.

Genomics and Molecular Medicine Unit, CSIR Institute of Genomics and Integrative Biology, Mathura Road, Delhi, India.

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http://dx.doi.org/10.1128/genomeA.01256-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3907736PMC
January 2014

Systematic transcriptome wide analysis of lncRNA-miRNA interactions.

PLoS One 2013 6;8(2):e53823. Epub 2013 Feb 6.

GN Ramachandran Knowledge Center for Genome Informatics, CSIR-Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi, India.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0053823PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3566149PMC
December 2013

Time for the zebrafish ENCODE.

J Genet 2013 Dec;92(3):695-701

Genomics and Molecular Medicine, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Mall Road, Delhi 110 007, India.

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December 2013

Cheminformatic models based on machine learning for pyruvate kinase inhibitors of Leishmania mexicana.

BMC Bioinformatics 2013 Nov 19;14:329. Epub 2013 Nov 19.

GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology, Mall Road, Delhi, 110007, India.

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http://dx.doi.org/10.1186/1471-2105-14-329DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4225525PMC
November 2013

MitoLSDB: a comprehensive resource to study genotype to phenotype correlations in human mitochondrial DNA variations.

PLoS One 2013 9;8(4):e60066. Epub 2013 Apr 9.

Department of Bioinformatics, Stella Maris College, University of Madras, Chennai, Tamil Nadu, India.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0060066PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3621970PMC
October 2013

lncRNome: a comprehensive knowledgebase of human long noncoding RNAs.

Database (Oxford) 2013 11;2013:bat034. Epub 2013 Jul 11.

GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology, Mall Road, Delhi 110007, India.

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https://academic.oup.com/database/article/doi/10.1093/databa
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http://dx.doi.org/10.1093/database/bat034DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3708617PMC
October 2013

Hsp90-targeted miRNA-liposomal formulation for systemic antitumor effect.

Biomaterials 2013 Sep 14;34(28):6804-17. Epub 2013 Jun 14.

Division of Lipid Science & Technology, CSIR-Indian Institute of Chemical Technology, Hyderabad 500 007, India.

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http://dx.doi.org/10.1016/j.biomaterials.2013.05.054DOI Listing
September 2013

Predictive modeling of anti-malarial molecules inhibiting apicoplast formation.

BMC Bioinformatics 2013 Feb 15;14:55. Epub 2013 Feb 15.

CSIR Open Source Drug Discovery Unit, Anusandhan Bhavan, Delhi 110001, India.

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http://dx.doi.org/10.1186/1471-2105-14-55DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3599641PMC
February 2013

Long Non-Coding RNAs in Infection Biology.

Front Genet 2012 9;3:308. Epub 2013 Jan 9.

GN Ramachandran Knowledge Center for Genome Informatics, Institute of Genomics and Integrative Biology, Council of Scientific and Industrial Research Delhi, India.

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http://dx.doi.org/10.3389/fgene.2012.00308DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3540418PMC
January 2013

Genome-wide analysis reveals distinct patterns of epigenetic features in long non-coding RNA loci.

Nucleic Acids Res 2012 Nov 25;40(20):10018-31. Epub 2012 Aug 25.

Genomics and Molecular Medicine Unit and GN Ramachandran Knowledge Center for Genome Informatics, CSIR-Institute of Genomics and Integrative Biology, Delhi 110007, India.

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http://dx.doi.org/10.1093/nar/gks776DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3488231PMC
November 2012

Integrative transcriptome analysis suggest processing of a subset of long non-coding RNAs to small RNAs.

Biol Direct 2012 Aug 7;7:25. Epub 2012 Aug 7.

GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology, Mall Road, Delhi 110007, India.

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http://biologydirect.biomedcentral.com/articles/10.1186/1745
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http://dx.doi.org/10.1186/1745-6150-7-25DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3477000PMC
August 2012

Computational analysis and predictive modeling of small molecule modulators of microRNA.

J Cheminform 2012 Aug 13;4(1):16. Epub 2012 Aug 13.

GN Ramachandran Knowledge Center for Genome Informatics, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Mall Road, Delhi, 110007, India.

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http://dx.doi.org/10.1186/1758-2946-4-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3466443PMC
August 2012