Vincenzo Bonnici

Vincenzo Bonnici

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Vincenzo Bonnici

Vincenzo Bonnici

Publications by authors named "Vincenzo Bonnici"

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16Publications

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Construction and Analysis of miRNA Regulatory Networks.

Methods Mol Biol 2019 ;1970:121-167

Department of Computer Science, University of Verona, Verona, Italy.

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http://dx.doi.org/10.1007/978-1-4939-9207-2_9DOI Listing
September 2019

Fast Subgraph Matching Strategies Based on Pattern-Only Heuristics.

Interdiscip Sci 2019 Mar 21;11(1):21-32. Epub 2019 Feb 21.

Department of Computer Science, University of Verona, Verona, Italy.

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http://dx.doi.org/10.1007/s12539-019-00323-0DOI Listing
March 2019

Correction to: cuRnet: an R package for graph traversing on GPU.

BMC Bioinformatics 2018 11 27;19(1):456. Epub 2018 Nov 27.

Department of Computer Science, University of Verona, Strada le Grazie, 15, Verona, Italy.

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http://dx.doi.org/10.1186/s12859-018-2484-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6260727PMC
November 2018

PanDelos: a dictionary-based method for pan-genome content discovery.

BMC Bioinformatics 2018 Nov 30;19(Suppl 15):437. Epub 2018 Nov 30.

Department of Computer Science, University of Verona, Strada le Grazie, 15, Verona, 37134, Italy.

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http://dx.doi.org/10.1186/s12859-018-2417-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6266927PMC
November 2018

cuRnet: an R package for graph traversing on GPU.

BMC Bioinformatics 2018 Oct 15;19(Suppl 10):356. Epub 2018 Oct 15.

Department of Computer Science, University of Verona, Strada le Grazie, 15, Italy, Verona, Italy.

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https://bmcbioinformatics.biomedcentral.com/articles/10.1186
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http://dx.doi.org/10.1186/s12859-018-2310-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6191969PMC
October 2018

Arena-Idb: a platform to build human non-coding RNA interaction networks.

BMC Bioinformatics 2018 Oct 15;19(Suppl 10):350. Epub 2018 Oct 15.

Department of Computer Science,University of Verona, Strada Le Grazie, Verona, Italy.

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https://bmcbioinformatics.biomedcentral.com/articles/10.1186
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http://dx.doi.org/10.1186/s12859-018-2298-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6191940PMC
October 2018

On the Variable Ordering in Subgraph Isomorphism Algorithms.

IEEE/ACM Trans Comput Biol Bioinform 2017 Jan-Feb;14(1):193-203. Epub 2016 Jan 7.

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http://dx.doi.org/10.1109/TCBB.2016.2515595DOI Listing
October 2017

APPAGATO: an APproximate PArallel and stochastic GrAph querying TOol for biological networks.

Bioinformatics 2016 07 29;32(14):2159-66. Epub 2016 Apr 29.

Department of Computer Science, University of Verona, Strada Le Grazie 15 - 37134, Verona Department of Clinical and Experimental Medicine, University of Catania, via Palermo, 636 - 95122, Catania.

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http://dx.doi.org/10.1093/bioinformatics/btw223DOI Listing
July 2016

Informational laws of genome structures.

Sci Rep 2016 06 29;6:28840. Epub 2016 Jun 29.

University of Verona, Department of Computer Science, University of Verona, Verona 37134, Italy.

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http://dx.doi.org/10.1038/srep28840DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4937431PMC
June 2016

NetMatchStar: an enhanced Cytoscape network querying app.

F1000Res 2015 5;4:479. Epub 2015 Aug 5.

Department of Clinical and Experimental Medicine, University of Catania, Catania, 95125, Italy.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4642848PMC
http://dx.doi.org/10.12688/f1000research.6656.2DOI Listing
December 2015

Comprehensive reconstruction and visualization of non-coding regulatory networks in human.

Front Bioeng Biotechnol 2014 10;2:69. Epub 2014 Dec 10.

Department of Clinical and Experimental Medicine, University of Catania , Catania , Italy.

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http://dx.doi.org/10.3389/fbioe.2014.00069DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4261811PMC
December 2014

A subgraph isomorphism algorithm and its application to biochemical data.

BMC Bioinformatics 2013 22;14 Suppl 7:S13. Epub 2013 Apr 22.

Dept. Computer Science - University of Verona, Verona, 37134, Italy.

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http://dx.doi.org/10.1186/1471-2105-14-S7-S13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3633016PMC
December 2013