Vincent Magrini

Vincent Magrini

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Vincent Magrini

Vincent Magrini

Publications by authors named "Vincent Magrini"

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Expanding the clinical history associated with syndromic Klippel-Feil: A unique case of comorbidity with medulloblastoma.

Eur J Med Genet 2019 Aug 10;62(8):103701. Epub 2019 Jun 10.

Institute for Genomic Medicine, Nationwide Children's Hospital, Columbus, OH, USA; Department of Pediatrics, The Ohio State University College of Medicine, Columbus, OH, USA; Department of Pathology, The Ohio State University College of Medicine, Columbus, OH, USA.

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http://dx.doi.org/10.1016/j.ejmg.2019.103701DOI Listing
August 2019

Samovar: Single-Sample Mosaic Single-Nucleotide Variant Calling with Linked Reads.

iScience 2019 Aug 29;18:1-10. Epub 2019 May 29.

Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA; Department of Biology, Johns Hopkins University, Baltimore, MD, USA; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA. Electronic address:

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http://dx.doi.org/10.1016/j.isci.2019.05.037DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6609817PMC
August 2019

subsp. produces mono-lateral serine rich repeat protein fibrils one of which contributes to saliva binding via sialic acid.

Infect Immun 2019 Jul 15. Epub 2019 Jul 15.

Center for Microbial Pathogenesis, Abigail Wexner Research Institute at Nationwide Children's Hospital, Columbus, OH, USA.

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http://dx.doi.org/10.1128/IAI.00406-19DOI Listing
July 2019

Characterizing the Major Structural Variant Alleles of the Human Genome.

Cell 2019 Jan 17;176(3):663-675.e19. Epub 2019 Jan 17.

Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA; Howard Hughes Medical Institute, University of Washington, Seattle, WA 98195, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00928674183163
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http://dx.doi.org/10.1016/j.cell.2018.12.019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6438697PMC
January 2019

Improving eukaryotic genome annotation using single molecule mRNA sequencing.

BMC Genomics 2018 03 1;19(1):172. Epub 2018 Mar 1.

McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, 63108, USA.

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http://dx.doi.org/10.1186/s12864-018-4555-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5833154PMC
March 2018

Comprehensive discovery of noncoding RNAs in acute myeloid leukemia cell transcriptomes.

Exp Hematol 2017 11 28;55:19-33. Epub 2017 Jul 28.

The McDonnell Genome Institute, Washington University, St. Louis, MO; Department of Medicine, Washington University, St. Louis, MO; Siteman Cancer Center, Washington University, St. Louis, MO; Department of Biomedical Engineering, Washington University, St. Louis, MO. Electronic address:

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http://dx.doi.org/10.1016/j.exphem.2017.07.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5772960PMC
November 2017

Compartmentalization of functions and predicted miRNA regulation among contiguous regions of the nematode intestine.

RNA Biol 2017 10 22;14(10):1335-1352. Epub 2016 Mar 22.

a McDonnell Genome Institute, Washington University in St. Louis , St. Louis , MO , USA.

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http://dx.doi.org/10.1080/15476286.2016.1166333DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5711464PMC
October 2017

Identification of a novel fusion transcript between human relaxin-1 (RLN1) and human relaxin-2 (RLN2) in prostate cancer.

Mol Cell Endocrinol 2016 Jan 21;420:159-68. Epub 2015 Oct 21.

Institute of Health and Biomedical Innovation, Australian Prostate Cancer Research Centre-Queensland, Queensland University of Technology/Translational Research Institute, Brisbane, QLD, Australia; Vancouver Prostate Centre, Department of Urologic Sciences, University of British Columbia, Vancouver, British Columbia, Canada. Electronic address:

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http://dx.doi.org/10.1016/j.mce.2015.10.011DOI Listing
January 2016

A common founding clone with TP53 and PTEN mutations gives rise to a concurrent germ cell tumor and acute megakaryoblastic leukemia.

Cold Spring Harb Mol Case Stud 2016 Jan;2(1):a000687

McDonnell Genome Institute, Washington University School of Medicine, St. Louis, Missouri 63110, USA;; Division of Oncology, Department of Medicine, Washington University School of Medicine, St. Louis, Missouri 63110, USA;

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http://dx.doi.org/10.1101/mcs.a000687DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4849848PMC
January 2016

Optimizing cancer genome sequencing and analysis.

Cell Syst 2015 Sep;1(3):210-223

The McDonnell Genome Institute, Washington University, St. Louis, MO, USA, 63108 ; Department of Genetics, Washington University, St. Louis, MO, USA, 63108 ; Siteman Cancer Center, Washington University, St. Louis, MO, USA, 63108 ; Department of Medicine, Washington University, St. Louis, MO, USA, 63108.

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http://dx.doi.org/10.1016/j.cels.2015.08.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4669575PMC
September 2015

Genome Modeling System: A Knowledge Management Platform for Genomics.

PLoS Comput Biol 2015 Jul 9;11(7):e1004274. Epub 2015 Jul 9.

The Genome Institute, Washington University in St. Louis, St. Louis, Missouri, United States of America; Department of Genetics, Washington University School of Medicine, St. Louis, Missouri, United States of America; Department of Medicine, Washington University School of Medicine, St. Louis, Missouri, United States of America; Siteman Cancer Center, Washington University School of Medicine, St. Louis, Missouri, United States of America; Department of Molecular Microbiology, Washington University School of Medicine, St. Louis, Missouri, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1004274DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4497734PMC
July 2015

cDNA hybrid capture improves transcriptome analysis on low-input and archived samples.

J Mol Diagn 2014 Jul 9;16(4):440-51. Epub 2014 May 9.

The Genome Institute, Washington University School of Medicine, St. Louis, Missouri; Division of Oncology, Department of Internal Medicine, Washington University School of Medicine, St. Louis, Missouri; Alvin J. Siteman Cancer Center, Washington University School of Medicine, St. Louis, Missouri; Department of Biomedical Engineering, Washington University School of Medicine, St. Louis, Missouri. Electronic address:

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http://dx.doi.org/10.1016/j.jmoldx.2014.03.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4078367PMC
July 2014

Clonal architecture of secondary acute myeloid leukemia defined by single-cell sequencing.

PLoS Genet 2014 Jul 10;10(7):e1004462. Epub 2014 Jul 10.

Department of Internal Medicine, Division of Oncology, Washington University, St. Louis, Missouri, United States of America; Siteman Cancer Center, Washington University, St. Louis, Missouri, United States of America; Department of Pathology and Immunology, Washington University, St. Louis, Missouri, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1004462DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4091781PMC
July 2014

Functional heterogeneity of genetically defined subclones in acute myeloid leukemia.

Cancer Cell 2014 Mar 6;25(3):379-92. Epub 2014 Mar 6.

The Genome Institute, Washington University, St. Louis, MO 63110, USA; Division of Oncology, Section of Stem Cell Biology, Department of Internal Medicine, Washington University School of Medicine, St. Louis, MO 63110, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ccr.2014.01.031DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3983786PMC
March 2014

Silencing of germline-expressed genes by DNA elimination in somatic cells.

Dev Cell 2012 Nov 1;23(5):1072-80. Epub 2012 Nov 1.

Department of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, CO 80045, USA.

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http://dx.doi.org/10.1016/j.devcel.2012.09.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3620533PMC
November 2012

Exploiting Oxytricha trifallax nanochromosomes to screen for non-coding RNA genes.

Nucleic Acids Res 2011 Sep 28;39(17):7529-47. Epub 2011 Jun 28.

Janelia Farm Research Campus, Howard Hughes Medical Institute, Ashburn VA 20147, USA.

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http://dx.doi.org/10.1093/nar/gkr501DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3177221PMC
September 2011

Biome representational in silico karyotyping.

Genome Res 2011 Apr 10;21(4):626-33. Epub 2011 Feb 10.

Department of Ophthalmology and Visual Science, Washington University, St. Louis, MO 63110, USA.

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http://dx.doi.org/10.1101/gr.115758.110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3065710PMC
April 2011

Comparative and demographic analysis of orang-utan genomes.

Authors:
Devin P Locke LaDeana W Hillier Wesley C Warren Kim C Worley Lynne V Nazareth Donna M Muzny Shiaw-Pyng Yang Zhengyuan Wang Asif T Chinwalla Pat Minx Makedonka Mitreva Lisa Cook Kim D Delehaunty Catrina Fronick Heather Schmidt Lucinda A Fulton Robert S Fulton Joanne O Nelson Vincent Magrini Craig Pohl Tina A Graves Chris Markovic Andy Cree Huyen H Dinh Jennifer Hume Christie L Kovar Gerald R Fowler Gerton Lunter Stephen Meader Andreas Heger Chris P Ponting Tomas Marques-Bonet Can Alkan Lin Chen Ze Cheng Jeffrey M Kidd Evan E Eichler Simon White Stephen Searle Albert J Vilella Yuan Chen Paul Flicek Jian Ma Brian Raney Bernard Suh Richard Burhans Javier Herrero David Haussler Rui Faria Olga Fernando Fleur Darré Domènec Farré Elodie Gazave Meritxell Oliva Arcadi Navarro Roberta Roberto Oronzo Capozzi Nicoletta Archidiacono Giuliano Della Valle Stefania Purgato Mariano Rocchi Miriam K Konkel Jerilyn A Walker Brygg Ullmer Mark A Batzer Arian F A Smit Robert Hubley Claudio Casola Daniel R Schrider Matthew W Hahn Victor Quesada Xose S Puente Gonzalo R Ordoñez Carlos López-Otín Tomas Vinar Brona Brejova Aakrosh Ratan Robert S Harris Webb Miller Carolin Kosiol Heather A Lawson Vikas Taliwal André L Martins Adam Siepel Arindam Roychoudhury Xin Ma Jeremiah Degenhardt Carlos D Bustamante Ryan N Gutenkunst Thomas Mailund Julien Y Dutheil Asger Hobolth Mikkel H Schierup Oliver A Ryder Yuko Yoshinaga Pieter J de Jong George M Weinstock Jeffrey Rogers Elaine R Mardis Richard A Gibbs Richard K Wilson

Nature 2011 Jan;469(7331):529-33

The Genome Center at Washington University, Washington University School of Medicine, 4444 Forest Park Avenue, Saint Louis, Missouri 63108, USA.

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http://dx.doi.org/10.1038/nature09687DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3060778PMC
January 2011

SLOPE: a quick and accurate method for locating non-SNP structural variation from targeted next-generation sequence data.

Bioinformatics 2010 Nov 27;26(21):2684-8. Epub 2010 Sep 27.

Department of Internal Medicine, Division of Genetic Epidemiology, Department of Pathology, University of Utah, Salt Lake City, UT, USA.

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http://dx.doi.org/10.1093/bioinformatics/btq528DOI Listing
November 2010

A method for isolating and analyzing human mRNA from newborn stool.

J Immunol Methods 2009 Sep 3;349(1-2):56-60. Epub 2009 Aug 3.

Washington University School of Medicine, Department of Pediatrics, Division of Pediatric Gastroenterology, Washington, United States of America.

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http://dx.doi.org/10.1016/j.jim.2009.07.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2850193PMC
September 2009

The value of avian genomics to the conservation of wildlife.

BMC Genomics 2009 Jul 14;10 Suppl 2:S10. Epub 2009 Jul 14.

Genetics Division, San Diego Zoo's Institute for Conservation Research, Zoological Society of San Diego, Arnold and Mabel Beckman Center for Conservation Research, 15600 San Pasqual Valley Rd., Escondido, CA 92027, USA.

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http://dx.doi.org/10.1186/1471-2164-10-S2-S10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2966331PMC
July 2009

Conifers have a unique small RNA silencing signature.

RNA 2008 Aug 19;14(8):1508-15. Epub 2008 Jun 19.

Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada V5A 1S6.

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http://dx.doi.org/10.1261/rna.1052008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2491476PMC
August 2008

Whole-genome sequencing and variant discovery in C. elegans.

Nat Methods 2008 Feb 20;5(2):183-8. Epub 2008 Jan 20.

Washington University School of Medicine, Department of Genetics and Genome Sequencing Center, 4444 Forest Park Blvd., St. Louis, Missouri 63108, USA.

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http://dx.doi.org/10.1038/nmeth.1179DOI Listing
February 2008

Gallus GBrowse: a unified genomic database for the chicken.

Nucleic Acids Res 2008 Jan 11;36(Database issue):D719-23. Epub 2007 Oct 11.

Department of Animal and Food Sciences, University of Delaware, Newark, DE 19706, USA.

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http://dx.doi.org/10.1093/nar/gkm783DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238981PMC
January 2008

Extending assembly of short DNA sequences to handle error.

Bioinformatics 2007 Nov 24;23(21):2942-4. Epub 2007 Sep 24.

Department of Biology, University of Carolina-Chapel Hill, Chapel Hill, NC 27599, USA.

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http://dx.doi.org/10.1093/bioinformatics/btm451DOI Listing
November 2007

An obesity-associated gut microbiome with increased capacity for energy harvest.

Nature 2006 Dec;444(7122):1027-31

Center for Genome Sciences, Washington University, St. Louis, Missouri 63108, USA.

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http://dx.doi.org/10.1038/nature05414DOI Listing
December 2006

The repetitive landscape of the chicken genome.

Genome Res 2005 Jan 15;15(1):126-36. Epub 2004 Jul 15.

Plant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30602, USA.

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http://dx.doi.org/10.1101/gr.2438004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC540276PMC
January 2005

Fosmid-based physical mapping of the Histoplasma capsulatum genome.

Genome Res 2004 Aug;14(8):1603-9

Washington University School of Medicine, Genome Sequencing Center, St. Louis, Missouri 63108, USA.

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http://dx.doi.org/10.1101/gr.2361404DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC509269PMC
August 2004