Publications by authors named "Victoria M Pratt"

54Publications

Identifying End Users' Preferences about Structuring Pharmacogenetic Test Orders in an Electronic Health Record System.

J Mol Diagn 2020 Oct;22(10):1264-1271

San Francisco VA Health Care System, San Francisco, California; Division of Hematology-Oncology, Department of Pediatrics University of California, San Francisco School of Medicine, San Francisco, California; Department of Medicine, and the Division of Medical Genetics, Department of Pediatrics, University of California, San Francisco School of Medicine, San Francisco, California.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jmoldx.2020.06.015DOI Listing
October 2020

Severe Capecitabine Toxicity Associated With a Rare Variant Identified Through Whole-Genome Sequencing.

JCO Precis Oncol 2020 12;4. Epub 2020 Jun 12.

Department of Medicine, Division of Clinical Pharmacology, Indiana University School of Medicine, Indianapolis, IN.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1200/PO.20.00067DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7446391PMC
June 2020

EVEN-PLUS syndrome: A case report with novel variants in HSPA9 and evidence of HSPA9 gene dysfunction.

Am J Med Genet A 2020 Sep 1. Epub 2020 Sep 1.

Department of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, Indiana, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/ajmg.a.61808DOI Listing
September 2020

Tracheal aspirate as an alternative biologic sample for pharmacogenomics testing in mechanically ventilated pediatric patients.

Clin Transl Sci 2020 Jul 23. Epub 2020 Jul 23.

Division of Clinical Pharmacology, Indiana University School of Medicine, Indianapolis, Indiana, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/cts.12847DOI Listing
July 2020

PharmVar GeneFocus: CYP2C19.

Clin Pharmacol Ther 2020 Jun 29. Epub 2020 Jun 29.

Division of Clinical Pharmacology, Toxicology & Therapeutic Innovation, Children's Mercy, Kansas City, Missouri, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/cpt.1973DOI Listing
June 2020

Recommendations for Clinical Warfarin Genotyping Allele Selection: A Report of the Association for Molecular Pathology and the College of American Pathologists.

J Mol Diagn 2020 Jul 4;22(7):847-859. Epub 2020 May 4.

The Pharmacogenomics Working Group of the Clinical Practice Committee, Association for Molecular Pathology, Rockville, Maryland; Departments of Pathology and Laboratory Medicine and Genetics, University of North Carolina, Chapel Hill, North Carolina.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jmoldx.2020.04.204DOI Listing
July 2020

Influence of Uridine Diphosphate Glucuronosyltransferase Family 1 Member A1 and Solute Carrier Organic Anion Transporter Family 1 Member B1 Polymorphisms and Efavirenz on Bilirubin Disposition in Healthy Volunteers.

Drug Metab Dispos 2020 03 30;48(3):169-175. Epub 2019 Dec 30.

Department of Medicine, Division of Clinical Pharmacology (K.S.C., I.F.M., B.T.G., J.L., T.C.S., Z.D.), and Department of Medical and Molecular Genetics (E.B.M., V.M.P.), Indiana University School of Medicine, Indianapolis, Indiana

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1124/dmd.119.089052DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7011111PMC
March 2020

PharmVar and the Landscape of Pharmacogenetic Resources.

Clin Pharmacol Ther 2020 01 23;107(1):43-46. Epub 2019 Nov 23.

Department of Biomedical Data Science, Stanford University, Stanford, California, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/cpt.1654DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6925620PMC
January 2020

An unusual cause for Coffin-Lowry syndrome: Three brothers with a novel microduplication in RPS6KA3.

Am J Med Genet A 2019 12 12;179(12):2357-2364. Epub 2019 Sep 12.

Department of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, Indiana.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/ajmg.a.61353DOI Listing
December 2019

Characterization of Reference Materials for Genetic Testing of CYP2D6 Alleles: A GeT-RM Collaborative Project.

J Mol Diagn 2019 11 9;21(6):1034-1052. Epub 2019 Aug 9.

Informatics and Data Science Branch, Division of Laboratory Systems, Office of Surveillance, Epidemiology, and Laboratory Services, Centers for Disease Control and Prevention, Atlanta, Georgia. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jmoldx.2019.06.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6854474PMC
November 2019

Recommendations for Clinical CYP2C9 Genotyping Allele Selection: A Joint Recommendation of the Association for Molecular Pathology and College of American Pathologists.

J Mol Diagn 2019 09 8;21(5):746-755. Epub 2019 May 8.

The Pharmacogenomics (PGx) Working Group of the Clinical Practice Committee, Association for Molecular Pathology, Bethesda, Maryland; Department of Pathology and Laboratory Medicine and Department of Genetics, University of North Carolina, Chapel Hill, North Carolina.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jmoldx.2019.04.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7057225PMC
September 2019

Analytical Validation of Variants to Aid in Genotype-Guided Therapy for Oncology.

J Mol Diagn 2019 05 20;21(3):491-502. Epub 2019 Feb 20.

Division of Clinical Pharmacology, Indiana University School of Medicine, Indianapolis, Indiana.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jmoldx.2019.01.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6504676PMC
May 2019

Response to Gammal et al.

Genet Med 2019 08 12;21(8):1888-1889. Epub 2019 Jan 12.

Pharmacogenomics Analysis Laboratory, Central Arkansas Veterans Healthcare System, Little Rock, AR, USA.

View Article

Download full-text PDF

Source
http://www.nature.com/articles/s41436-018-0422-9
Publisher Site
http://dx.doi.org/10.1038/s41436-018-0422-9DOI Listing
August 2019

Report of Confirmation of the rs7853758 and rs885004 Haplotype in SLC28A3.

Genet Test Mol Biomarkers 2018 Nov 23;22(11):652-655. Epub 2018 Oct 23.

1 Department of Medical and Molecular Genetics and Indiana University School of Medicine , Indianapolis, Indiana.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1089/gtmb.2018.0194DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6249667PMC
November 2018

Standardization can accelerate the adoption of pharmacogenomics: current status and the path forward.

Pharmacogenomics 2018 07 19;19(10):847-860. Epub 2018 Jun 19.

Department of Pharmaceutical Sciences, St Jude Children's Research Hospital, Memphis, TN 38105, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.2217/pgs-2018-0028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6123879PMC
July 2018

Recommendations for Clinical CYP2C19 Genotyping Allele Selection: A Report of the Association for Molecular Pathology.

J Mol Diagn 2018 05 21;20(3):269-276. Epub 2018 Feb 21.

Pharmacogenomics Working Group of the Clinical Practice Committee, Association for Molecular Pathology, Bethesda, Maryland; Department of Pathology and Laboratory Medicine, University of North Carolina, Chapel Hill, North Carolina; Department of Genetics, University of North Carolina, Chapel Hill, North Carolina.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jmoldx.2018.01.011DOI Listing
May 2018

Multisite Investigation of Outcomes With Implementation of CYP2C19 Genotype-Guided Antiplatelet Therapy After Percutaneous Coronary Intervention.

JACC Cardiovasc Interv 2018 01 1;11(2):181-191. Epub 2017 Nov 1.

Department of Pharmacotherapy and Translational Research, University of Florida, Gainesville, Florida; Department of Medicine, Division of Cardiovascular Medicine, University of Florida, Gainesville, Florida.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jcin.2017.07.022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5775044PMC
January 2018

Lessons Learned When Introducing Pharmacogenomic Panel Testing into Clinical Practice.

Value Health 2017 01 21;20(1):54-59. Epub 2016 Oct 21.

Department of Medicine, Indiana University School of Medicine, Indianapolis, IN, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jval.2016.08.727DOI Listing
January 2017

The Spectrum of Clinical Utilities in Molecular Pathology Testing Procedures for Inherited Conditions and Cancer: A Report of the Association for Molecular Pathology.

J Mol Diagn 2016 09 16;18(5):605-619. Epub 2016 Aug 16.

Association for Molecular Pathology's Framework for the Evidence Needed to Demonstrate Clinical Utility Task Force, Bethesda, Maryland; Department of Pathology, University of Utah School of Medicine and ARUP Laboratories, Salt Lake City, Utah. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jmoldx.2016.05.007DOI Listing
September 2016

Cypiripi: exact genotyping of CYP2D6 using high-throughput sequencing data.

Bioinformatics 2015 Jun;31(12):i27-34

School of Computing Science, Simon Fraser University, Burnaby, BC V5A 1S6, Canada, Department of Medicine, Division of Clinical Pharmacology, Indiana University School of Medicine, Indianapolis, IN 46202, USA and School of Informatics and Computing, Indiana University, Bloomington, IN 47401, USA School of Computing Science, Simon Fraser University, Burnaby, BC V5A 1S6, Canada, Department of Medicine, Division of Clinical Pharmacology, Indiana University School of Medicine, Indianapolis, IN 46202, USA and School of Informatics and Computing, Indiana University, Bloomington, IN 47401, USA.

View Article

Download full-text PDF

Source
https://academic.oup.com/bioinformatics/article-lookup/doi/1
Publisher Site
http://dx.doi.org/10.1093/bioinformatics/btv232DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4542776PMC
June 2015

FDA's draft guidance on laboratory-developed tests increases clinical and economic risk to adoption of pharmacogenetic testing.

J Clin Pharmacol 2015 Jul;55(7):725-7

Department of Medicine, Division of Clinical Pharmacology, Indiana University School of Medicine, Indianapolis, IN, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/jcph.492DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4719776PMC
July 2015

Report of new haplotype for ABCC2 gene: rs17222723 and rs8187718 in cis.

J Mol Diagn 2015 Mar 29;17(2):201-5. Epub 2014 Dec 29.

Department of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, Indiana.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jmoldx.2014.11.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4348475PMC
March 2015

Are we ready for a blood-based test to detect colon cancer?

Authors:
Victoria M Pratt

Clin Chem 2014 Sep 15;60(9):1141-2. Epub 2014 Jul 15.

Department of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, IN.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1373/clinchem.2014.227132DOI Listing
September 2014

Revisiting oversight and regulation of molecular-based laboratory-developed tests: a position statement of the Association for Molecular Pathology.

J Mol Diagn 2014 Jan;16(1):3-6

The LDT Working Group of the Association for Molecular Pathology (AMP) Professional Relations Committee, Bethesda, Maryland; Department of Molecular Pathology, Cleveland Clinic Foundation, Cleveland, Ohio.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jmoldx.2013.10.003DOI Listing
January 2014

Mosaic isochromosome 15q and maternal uniparental isodisomy for chromosome 15 in a patient with morbid obesity and variant PWS-like phenotype.

Am J Med Genet A 2013 Jul 17;161A(7):1695-701. Epub 2013 May 17.

Cytogenetics Laboratory, Quest Diagnostics Nichols Institute, San Juan Capistrano, CA 92690, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/ajmg.a.35939DOI Listing
July 2013

Laboratory testing of CYP2D6 alleles in relation to tamoxifen therapy.

Genet Med 2012 Dec 6;14(12):990-1000. Epub 2012 Sep 6.

Department of Pathology, University of Utah School of Medicine, Molecular Genetics, ARUP Laboratories, Salt Lake City, Utah, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/gim.2012.108DOI Listing
December 2012

Identification of Novel CYP2D7-2D6 Hybrids: Non-Functional and Functional Variants.

Front Pharmacol 2010 4;1:121. Epub 2010 Oct 4.

Division of Developmental Pharmacology and Experimental Therapeutics, The Children's Mercy Hospital and Clinics Kansas City, MO, USA.

View Article

Download full-text PDF

Source
http://journal.frontiersin.org/article/10.3389/fphar.2010.00
Publisher Site
http://dx.doi.org/10.3389/fphar.2010.00121DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3153001PMC
November 2011

CpG methylation analysis--current status of clinical assays and potential applications in molecular diagnostics: a report of the Association for Molecular Pathology.

J Mol Diagn 2009 Jul 18;11(4):266-78. Epub 2009 Jun 18.

Methylation Working Group of the Association for Molecular Pathology Clinical Practice Committee, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.2353/jmoldx.2009.080125DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2710701PMC
July 2009

Development of a web-based query tool for quality assurance of clinical molecular genetic test results.

J Mol Diagn 2007 Feb;9(1):95-8

Molecular Genetics Laboratory, Quest Diagnostics Nichols Institute, 33608 Ortega Highway, San Juan Capistrano, CA 92690-6130, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.2353/jmoldx.2007.060107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1867424PMC
February 2007