Victor X Jin

Victor X Jin

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Publications by authors named "Victor X Jin"

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The eIF2α Kinase GCN2 Modulates Period and Rhythmicity of the Circadian Clock by Translational Control of Atf4.

Neuron 2019 Nov 12;104(4):724-735.e6. Epub 2019 Sep 12.

Department of Biomedical Sciences, University of Minnesota Medical School, Duluth, MN 55812, USA; Department of Neuroscience, University of Minnesota Medical School, Minneapolis, MN 55455, USA. Electronic address:

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http://dx.doi.org/10.1016/j.neuron.2019.08.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6872934PMC
November 2019

Disruption of Broad Epigenetic Domains in PDAC Cells by HAT Inhibitors.

Epigenomes 2019 Jun 2;3(2). Epub 2019 Jun 2.

Biomedical and Health Sciences Department, University of Vermont, Burlington, VT 05405, USA.

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http://dx.doi.org/10.3390/epigenomes3020011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6897394PMC
June 2019

BRCA1 mutations attenuate super-enhancer function and chromatin looping in haploinsufficient human breast epithelial cells.

Breast Cancer Res 2019 04 17;21(1):51. Epub 2019 Apr 17.

Department of Biochemistry & Molecular Medicine, School of Medicine & Health Sciences, The George Washington University, Washington, DC, 20037, USA.

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http://dx.doi.org/10.1186/s13058-019-1132-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6472090PMC
April 2019

Chromatin-associated APC regulates gene expression in collaboration with canonical WNT signaling and AP-1.

Oncotarget 2018 Jul 27;9(58):31214-31230. Epub 2018 Jul 27.

Department of Cancer Biology and Genetics, The Ohio State University College of Medicine, Columbus, Ohio, United States of America.

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http://dx.doi.org/10.18632/oncotarget.25781DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6101278PMC
July 2018

Integrative analysis reveals functional and regulatory roles of H3K79me2 in mediating alternative splicing.

Genome Med 2018 04 17;10(1):30. Epub 2018 Apr 17.

Department of Molecular Medicine, University of Texas Health, 8403 Floyd Curl, San Antonio, TX, 78229, USA.

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http://dx.doi.org/10.1186/s13073-018-0538-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5902843PMC
April 2018

Computational Methods and Correlation of Exon-skipping Events with Splicing, Transcription, and Epigenetic Factors.

Methods Mol Biol 2017 ;1513:163-170

Department of Molecular Medicine, University of Texas Health Science Center, 8403 Floyd Curl, San Antonio, TX, 78229, USA.

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http://dx.doi.org/10.1007/978-1-4939-6539-7_11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5203767PMC
January 2018

An Introduction to Integrative Genomics and Systems Medicine in Cancer.

Genes (Basel) 2018 Jan 12;9(1). Epub 2018 Jan 12.

Department of Molecular Medicine, The University of Texas Health San Antonio, San Antonio, TX 78229, USA.

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http://dx.doi.org/10.3390/genes9010037DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5793188PMC
January 2018

Interferon-Stimulated Genes Are Transcriptionally Repressed by PR in Breast Cancer.

Mol Cancer Res 2017 10 6;15(10):1331-1340. Epub 2017 Jul 6.

Department of Biochemistry and Molecular Biology, University of Kansas Medical Center, Kansas City, Kansas.

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http://dx.doi.org/10.1158/1541-7786.MCR-17-0180DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5626608PMC
October 2017

Advances in Genomic Profiling and Analysis of 3D Chromatin Structure and Interaction.

Genes (Basel) 2017 Sep 8;8(9). Epub 2017 Sep 8.

Department of Molecular Medicine, University of Texas Health Science Center, San Antonio, TX 78229, USA.

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http://dx.doi.org/10.3390/genes8090223DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5615356PMC
September 2017

Transcription factor-associated combinatorial epigenetic pattern reveals higher transcriptional activity of TCF7L2-regulated intragenic enhancers.

BMC Genomics 2017 05 12;18(1):375. Epub 2017 May 12.

Department of Molecular Medicine, University of Texas Health Science Center, 8403 Floyd Curl, San Antonio, TX, 78229, USA.

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http://dx.doi.org/10.1186/s12864-017-3764-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5429574PMC
May 2017

DNA Methylation Targets Influenced by Bisphenol A and/or Genistein Are Associated with Survival Outcomes in Breast Cancer Patients.

Genes (Basel) 2017 May 15;8(5). Epub 2017 May 15.

Department of Pharmacology and Toxicology University of Alabama at Birmingham, 1670 University Boulevard, Birmingham, AL 35294, USA.

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http://dx.doi.org/10.3390/genes8050144DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5448018PMC
May 2017

EGFR-Dependent Regulated Intramembrane Proteolysis of EpCAM-Response.

Cancer Res 2017 04 22;77(7):1777. Epub 2017 Mar 22.

Department of Molecular Medicine/Institute of Biotechnology, University of Texas Health Science Center at San Antonio, San Antonio, Texas.

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http://dx.doi.org/10.1158/0008-5472.CAN-16-3440DOI Listing
April 2017

COPAR: A ChIP-Seq Optimal Peak Analyzer.

Biomed Res Int 2017 5;2017:5346793. Epub 2017 Mar 5.

Department of Molecular Medicine & Biostatistics, University of Texas Health Science Center, San Antonio, TX 78249, USA.

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http://dx.doi.org/10.1155/2017/5346793DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5357551PMC
April 2017

Methyl-binding DNA capture Sequencing for Patient Tissues.

J Vis Exp 2016 10 31(116). Epub 2016 Oct 31.

Department of Molecular Medicine, University of Texas Health Science Center at San Antonio;

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http://dx.doi.org/10.3791/54131DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5203769PMC
October 2016

Frontiers in Integrative Genomics and Translational Bioinformatics.

Biomed Res Int 2015 28;2015:725491. Epub 2015 Oct 28.

Department of Computer Science, The University of Texas at San Antonio, San Antonio, TX 78249, USA.

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http://dx.doi.org/10.1155/2015/725491DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4641167PMC
September 2016

Genome-wide analysis reveals positional-nucleosome-oriented binding pattern of pioneer factor FOXA1.

Nucleic Acids Res 2016 09 25;44(16):7540-54. Epub 2016 Jul 25.

Department of Molecular Medicine, University of Texas Health Science Center at San Antonio, TX 78229, USA

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http://dx.doi.org/10.1093/nar/gkw659DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5027512PMC
September 2016

Integrative analysis identifies targetable CREB1/FoxA1 transcriptional co-regulation as a predictor of prostate cancer recurrence.

Nucleic Acids Res 2016 05 6;44(9):4105-22. Epub 2016 Jan 6.

Ohio State Biochemistry Program, The Ohio State University, Columbus, OH 43210, USA Department of Molecular Virology, Immunology and Medical Genetics, The Ohio State University, Columbus, OH 43210, USA The Ohio State University Comprehensive Cancer Center, Columbus, OH 43210, USA

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http://dx.doi.org/10.1093/nar/gkv1528DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4872073PMC
May 2016

Inference of hierarchical regulatory network of TCF7L2 binding sites in MCF7 cell line.

Int J Comput Biol Drug Des 2016;9(1-2):25-53

Departments of Molecular Medicine and Epidemiology and Biostatistics, University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA,

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http://dx.doi.org/10.1504/IJCBDD.2016.074990DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5218816PMC
January 2016

Ligand-dependent genomic function of glucocorticoid receptor in triple-negative breast cancer.

Nat Commun 2015 Sep 16;6:8323. Epub 2015 Sep 16.

Department of Molecular Virology, Immunology and Medical Genetics, Comprehensive Cancer Center, Ohio State University College of Medicine, Columbus, Ohio 43210, USA.

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http://dx.doi.org/10.1038/ncomms9323DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4573460PMC
September 2015

Genome-wide DNA methylation analysis reveals estrogen-mediated epigenetic repression of metallothionein-1 gene cluster in breast cancer.

Clin Epigenetics 2015 24;7:13. Epub 2015 Feb 24.

Department of Molecular Medicine/Institute of Biotechnology, University of Texas Health Science Center at San Antonio, STRF, Room 225, 7703 Floyd Curl Drive, San Antonio, 78229 TX USA ; Cancer Therapy and Research Center, University of Texas Health Science Center, 7703 Floyd Curl Drive, San Antonio, 78229 TX USA ; Department of Epidemiology and Biostatistics, University of Texas Health Science Center, 7703 Floyd Curl Drive, San Antonio, 78229 TX USA.

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http://dx.doi.org/10.1186/s13148-015-0045-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4355986PMC
March 2015

Agonist and antagonist switch DNA motifs recognized by human androgen receptor in prostate cancer.

EMBO J 2015 Feb 22;34(4):502-16. Epub 2014 Dec 22.

Department of Molecular Virology, Immunology and Medical Genetics and the Comprehensive Cancer Center, The Ohio State University College of Medicine, Columbus, OH, USA

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http://dx.doi.org/10.15252/embj.201490306DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4331004PMC
February 2015

Three-tiered role of the pioneer factor GATA2 in promoting androgen-dependent gene expression in prostate cancer.

Nucleic Acids Res 2014 Apr 13;42(6):3607-22. Epub 2014 Jan 13.

Department of Molecular and Cellular Biochemistry and the Comprehensive Cancer Center, The Ohio State University College of Medicine, Columbus, OH 43210, USA, Ohio State Biochemistry Graduate Program, The Ohio State University, Columbus, OH 43210, USA, Department of Molecular Medicine, University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA, State Key Laboratory of Molecular Oncology, Cancer Institute and Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100021, China and Medical Sciences Program and Department of Cellular and Integrative Physiology, Indiana University School of Medicine, Bloomington, IN 47405, USA.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkt1382DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3973339PMC
April 2014

Computational analysis reveals a correlation of exon-skipping events with splicing, transcription and epigenetic factors.

Nucleic Acids Res 2014 Mar 24;42(5):2856-69. Epub 2013 Dec 24.

Departments of Molecular Medicine, University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, Department of Molecular and Cellular Biochemistry and the Comprehensive Cancer Center, The Ohio State University, Columbus, OH 43210, USA, Department of Biomedical Informatics, The Ohio State University, Columbus, OH 43210, USA Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Rockville, MD 20852, USA and Deparment of Epidemiology and Biostatistics, University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkt1338DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3950716PMC
March 2014

Cancer omics: from regulatory networks to clinical outcomes.

Cancer Lett 2013 Nov 29;340(2):277-83. Epub 2012 Nov 29.

Department of Biomedical Informatics, The Ohio State University, Columbus, OH 43210, USA.

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http://dx.doi.org/10.1016/j.canlet.2012.11.033DOI Listing
November 2013

MicroRNA-31 predicts the presence of lymph node metastases and survival in patients with lung adenocarcinoma.

Clin Cancer Res 2013 Oct 14;19(19):5423-33. Epub 2013 Aug 14.

Authors' Affiliations: Department of Molecular Medicine, The University of Texas Health Science Center, San Antonio, Texas; Department of Radiation Oncology, Department of Molecular Virology, Immunology and Medical Genetics; Comprehensive Cancer Center; Department of Pathology, College of Medicine; Department of Surgery, Division of Thoracic Surgery, The Ohio State University, Columbus, Ohio; and Yanbian University College of Medicine, Ji Lin, China.

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http://clincancerres.aacrjournals.org/content/19/19/5423.ful
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http://clincancerres.aacrjournals.org/content/early/2013/08/
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http://clincancerres.aacrjournals.org/cgi/doi/10.1158/1078-0
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http://dx.doi.org/10.1158/1078-0432.CCR-13-0320DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3823052PMC
October 2013

ZBTB33 binds unmethylated regions of the genome associated with actively expressed genes.

Epigenetics Chromatin 2013 May 21;6(1):13. Epub 2013 May 21.

Department of Biochemistry & Molecular Biology, Norris Comprehensive Cancer Center, University of Southern California, Los Angeles, CA, 90089, USA.

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http://dx.doi.org/10.1186/1756-8935-6-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3663758PMC
May 2013

A hidden Markov model to identify combinatorial epigenetic regulation patterns for estrogen receptor α target genes.

Bioinformatics 2013 Jan 26;29(1):22-8. Epub 2012 Oct 26.

Department of Biomedical Informatics, The Ohio State University, Columbus, OH 43210, USA.

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http://dx.doi.org/10.1093/bioinformatics/bts639DOI Listing
January 2013

Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages.

Nucleic Acids Res 2012 Sep 6;40(16):7690-704. Epub 2012 Jun 6.

Department of Biomedical Informatics, 460 W 12th Avenue, 212 BRT, The Ohio State University, Columbus, OH 43210, USA.

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http://dx.doi.org/10.1093/nar/gks501DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3439894PMC
September 2012

Cell type-specific binding patterns reveal that TCF7L2 can be tethered to the genome by association with GATA3.

Genome Biol 2012 Sep 26;13(9):R52. Epub 2012 Sep 26.

Department of Biochemistry and Molecular Biology, Norris Comprehensive Cancer Center, University of Southern California, Los Angeles, CA 90089, USA.

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http://genomebiology.biomedcentral.com/articles/10.1186/gb-2
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http://dx.doi.org/10.1186/gb-2012-13-9-r52DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3491396PMC
September 2012

Uncovering transcription factor modules using one- and three-dimensional analyses.

J Biol Chem 2012 Sep 5;287(37):30914-21. Epub 2012 Sep 5.

Department of Biomedical Informatics, The Ohio State University, Columbus, Ohio 43210, USA.

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http://dx.doi.org/10.1074/jbc.R111.309229DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3438924PMC
September 2012

Using ChIPMotifs for de novo motif discovery of OCT4 and ZNF263 based on ChIP-based high-throughput experiments.

Methods Mol Biol 2012 ;802:323-34

Department of Biomedical Informatics, The Ohio State University, Columbus, OH, USA.

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http://dx.doi.org/10.1007/978-1-61779-400-1_21DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4160035PMC
April 2012

Integrative identification of core genetic regulatory modules via a structural model-based clustering method.

Int J Comput Biol Drug Des 2011 28;4(2):127-46. Epub 2011 Jun 28.

Department of Biomedical Informatics, The Ohio State University, Columbus, OH 43210, USA.

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http://dx.doi.org/10.1504/IJCBDD.2011.041007DOI Listing
September 2011

Targeted methylation of two tumor suppressor genes is sufficient to transform mesenchymal stem cells into cancer stem/initiating cells.

Cancer Res 2011 Jul 25;71(13):4653-63. Epub 2011 Apr 25.

Human Epigenomics Center, Department of Life Science, Institute of Molecular Biology and Institute of Biomedical Science, National Chung Cheng University; Chang Gung Memorial Hospital, Chia-Yi, Taiwan.

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http://cancerres.aacrjournals.org/cgi/doi/10.1158/0008-5472.
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http://dx.doi.org/10.1158/0008-5472.CAN-10-3418DOI Listing
July 2011

Functional analysis of KAP1 genomic recruitment.

Mol Cell Biol 2011 May 22;31(9):1833-47. Epub 2011 Feb 22.

Department of Biochemistry & Molecular Biology, Norris Comprehensive Cancer Center, 1450 Biggy Street, NRT 6503, Mail Code 9601, University of Southern California, Los Angeles, CA 90089, USA.

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http://dx.doi.org/10.1128/MCB.01331-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3133220PMC
May 2011

Epigenetic silencing mediated through activated PI3K/AKT signaling in breast cancer.

Cancer Res 2011 Mar 7;71(5):1752-62. Epub 2011 Jan 7.

Human Cancer Genetics Program, Department of Molecular Virology, Immunology, and Medical Genetics, The Ohio State University, Columbus, OH 43210, USA.

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http://dx.doi.org/10.1158/0008-5472.CAN-10-3573DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3048165PMC
March 2011

W-ChIPeaks: a comprehensive web application tool for processing ChIP-chip and ChIP-seq data.

Bioinformatics 2011 Feb 7;27(3):428-30. Epub 2010 Dec 7.

Department of Biomedical Informatics, The Ohio State University, Columbus, OH 43221, USA.

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http://dx.doi.org/10.1093/bioinformatics/btq669DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3031039PMC
February 2011

An improved profile-level domain linker propensity index for protein domain boundary prediction.

Protein Pept Lett 2011 Jan;18(1):7-16

Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, China.

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http://dx.doi.org/10.2174/092986611794328717DOI Listing
January 2011

Inference of hierarchical regulatory network of estrogen-dependent breast cancer through ChIP-based data.

BMC Syst Biol 2010 Dec 17;4:170. Epub 2010 Dec 17.

Department of Biomedical Informatics, The Ohio State University, Columbus, USA.

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http://dx.doi.org/10.1186/1752-0509-4-170DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3012048PMC
December 2010

ZNF274 recruits the histone methyltransferase SETDB1 to the 3' ends of ZNF genes.

PLoS One 2010 Dec 8;5(12):e15082. Epub 2010 Dec 8.

Department of Pharmacology and the Genome Center, University of California Davis, Davis, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0015082PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2999557PMC
December 2010

DNA methylation of the Trip10 promoter accelerates mesenchymal stem cell lineage determination.

Biochem Biophys Res Commun 2010 Sep 19;400(3):305-12. Epub 2010 Aug 19.

Human Epigenomics Center, Department of Life Science, Institute of Molecular Biology and Institute of Biomedical Science, National Chung Cheng University, Chia-Yi, Taiwan.

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http://dx.doi.org/10.1016/j.bbrc.2010.08.048DOI Listing
September 2010

HRTBLDb: an informative data resource for hormone receptors target binding loci.

Nucleic Acids Res 2010 Jan 22;38(Database issue):D676-81. Epub 2009 Sep 22.

Department of Biomedical Informatics, The Ohio State University, Columbus, OH 43210, USA.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkp734DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808888PMC
January 2010

Genomic targets of the KRAB and SCAN domain-containing zinc finger protein 263.

J Biol Chem 2010 Jan 2;285(2):1393-403. Epub 2009 Nov 2.

Department of Pharmacology and the Genome Center, University of California, Davis, California 95616, USA.

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http://dx.doi.org/10.1074/jbc.M109.063032DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2801265PMC
January 2010

W-ChIPMotifs: a web application tool for de novo motif discovery from ChIP-based high-throughput data.

Bioinformatics 2009 Dec 1;25(23):3191-3. Epub 2009 Oct 1.

Department of Biomedical Informatics, The Ohio State University, Columbus, OH 43210, USA.

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http://dx.doi.org/10.1093/bioinformatics/btp570DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2778340PMC
December 2009

E2F in vivo binding specificity: comparison of consensus versus nonconsensus binding sites.

Genome Res 2008 Nov 3;18(11):1763-77. Epub 2008 Oct 3.

Department of Pharmacology and the Genome Center, University of California-Davis, Davis, California 95616, USA.

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http://dx.doi.org/10.1101/gr.080622.108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2577861PMC
November 2008

Identification of an OCT4 and SRY regulatory module using integrated computational and experimental genomics approaches.

Genome Res 2007 Jun;17(6):807-17

Department of Pharmacology and the Genome Center, University of California-Davis, Davis, California 95616, USA.

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http://www.genome.org/cgi/doi/10.1101/gr.6006107
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http://dx.doi.org/10.1101/gr.6006107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1891340PMC
June 2007

Identification of genes directly regulated by the oncogene ZNF217 using chromatin immunoprecipitation (ChIP)-chip assays.

J Biol Chem 2007 Mar 26;282(13):9703-12. Epub 2007 Jan 26.

Department of Pharmacology and the Genome Center, University of California, Davis, California 95616, USA.

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http://dx.doi.org/10.1074/jbc.M611752200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2269729PMC
March 2007

A computational genomics approach to identify cis-regulatory modules from chromatin immunoprecipitation microarray data--a case study using E2F1.

Genome Res 2006 Dec 19;16(12):1585-95. Epub 2006 Oct 19.

Department of Pharmacology and the Genome Center, University of California-Davis, Davis, California 95616, USA.

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http://www.genome.org/cgi/doi/10.1101/gr.5520206
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http://dx.doi.org/10.1101/gr.5520206DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1665642PMC
December 2006

Locating mammalian transcription factor binding sites: a survey of computational and experimental techniques.

Genome Res 2006 Dec 19;16(12):1455-64. Epub 2006 Oct 19.

Genomic Functional Analysis Section, National Human Genome Research Institute, National Institutes of Health, Rockville, Maryland 20878, USA.

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http://www.genome.org/cgi/doi/10.1101/gr.4140006
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http://dx.doi.org/10.1101/gr.4140006DOI Listing
December 2006

A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alpha.

Bioinformatics 2006 Sep 29;22(18):2210-6. Epub 2006 Jun 29.

Division of Biostatistics, Department of Medicine, Indiana University School of Medicine Indianapolis, IN 47405, USA.

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http://dx.doi.org/10.1093/bioinformatics/btl329DOI Listing
September 2006

Suz12 binds to silenced regions of the genome in a cell-type-specific manner.

Genome Res 2006 Jul 2;16(7):890-900. Epub 2006 Jun 2.

Department of Pharmacology and the Genome Center, University of California-Davis, Davis, California 95616, USA.

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http://dx.doi.org/10.1101/gr.5306606DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1484456PMC
July 2006

Genome-wide analysis of core promoter elements from conserved human and mouse orthologous pairs.

BMC Bioinformatics 2006 Mar 7;7:114. Epub 2006 Mar 7.

Human Cancer Genetics Program, Comprehensive Cancer Center, Department of Molecular Virology, Immunology, and Medical Genetics, The Ohio State University, Columbus, OH 43210, USA.

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http://dx.doi.org/10.1186/1471-2105-7-114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1475891PMC
March 2006

Combinatorial analysis of transcription factor partners reveals recruitment of c-MYC to estrogen receptor-alpha responsive promoters.

Mol Cell 2006 Feb;21(3):393-404

Division of Human Cancer Genetics, Department of Molecular Virology, Immunology and Medical Genetics, Comprehensive Cancer Center, Ohio State University, Columbus, Ohio 43210, USA.

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http://dx.doi.org/10.1016/j.molcel.2005.12.016DOI Listing
February 2006

MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data.

Nucleic Acids Res 2006 Jan;34(Database issue):D98-103

Department of Molecular Virology, Immunology and Medical Genetics, Human Cancer Genetics Program, Comprehensive Cancer Center, The Ohio Stage University, 420 W 12th Avenue, TMRF 524, Columbus, OH 43210, USA.

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http://dx.doi.org/10.1093/nar/gkj096DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347458PMC
January 2006

OMGProm: a database of orthologous mammalian gene promoters.

Bioinformatics 2005 Mar 5;21(6):835-6. Epub 2004 Nov 5.

Human Cancer Genetics Program, Department of Molecular Virology, Immunology and Medical Genetics, Comprehensive Cancer Center, The Ohio State University, Columbus, OH 43210, USA.

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http://dx.doi.org/10.1093/bioinformatics/bti119DOI Listing
March 2005

Identifying estrogen receptor alpha target genes using integrated computational genomics and chromatin immunoprecipitation microarray.

Nucleic Acids Res 2004 17;32(22):6627-35. Epub 2004 Dec 17.

Human Cancer Genetics Program, Department of Molecular Virology, Immunology, and Medical Genetics, The Ohio State University, Columbus, OH 43210, USA.

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http://dx.doi.org/10.1093/nar/gkh1005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC545447PMC
January 2005

Loss of estrogen receptor signaling triggers epigenetic silencing of downstream targets in breast cancer.

Cancer Res 2004 Nov;64(22):8184-92

Human Cancer Genetics Program, Department of Molecular Virology, Immunology, and Medical Genetics, Comprehensive Cancer Center, The Ohio State University, Columbus, Ohio 43210, USA.

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http://cancerres.aacrjournals.org/lookup/doi/10.1158/0008-54
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http://dx.doi.org/10.1158/0008-5472.CAN-04-2045DOI Listing
November 2004