Victor Jongeneel

Victor Jongeneel

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Victor Jongeneel

Victor Jongeneel

Publications by authors named "Victor Jongeneel"

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KnowEnG: a knowledge engine for genomics.

J Am Med Inform Assoc 2015 Nov 23;22(6):1115-9. Epub 2015 Jul 23.

Department of Computer Science, University of Illinois at Urbana-Champaign, Urbana, IL, USA Institute of Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA.

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http://dx.doi.org/10.1093/jamia/ocv090DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5009907PMC
November 2015

Research capacity. Enabling the genomic revolution in Africa.

Authors:
Charles Rotimi Akin Abayomi Alash'le Abimiku Victoria May Adabayeri Clement Adebamowo Ezekiel Adebiyi Adebowale D Ademola Adebowale Adeyemo Dwomoa Adu Dissou Affolabi Godfred Agongo Samuel Ajayi Sally Akarolo-Anthony Rufus Akinyemi Albert Akpalu Marianne Alberts Orlando Alonso Betancourt Ahmed Mansour Alzohairy Gobena Ameni Olukemi Amodu Gabriel Anabwani Kristian Andersen Fatiu Arogundade Oyedunni Arulogun Danny Asogun Rasheed Bakare Naby Balde Mary Lynn Baniecki Christine Beiswanger Alia Benkahla Lara Bethke Micheal Boehnke Vincent Boima James Brandful Andrew I Brooks Frank C Brosius Chester Brown Bruno Bucheton David T Burke Barrington G Burnett Stacy Carrington-Lawrence Nadia Carstens John Chisi Alan Christoffels Richard Cooper Heather Cordell Nigel Crowther Talishiea Croxton Jantina de Vries Leslie Derr Peter Donkor Seydou Doumbia Audrey Duncanson Ivy Ekem Ahmed El Sayed Mark E Engel John C K Enyaru Dean Everett Faisal M Fadlelmola Eyitayo Fakunle Kenneth H Fischbeck Anne Fischer Onikepe Folarin Junaid Gamieldien Robert F Garry Simani Gaseitsiwe Rasheed Gbadegesin Anita Ghansah Maria Giovanni Parham Goesbeck F Xavier Gomez-Olive Donald S Grant Ravnit Grewal Mark Guyer Neil A Hanchard Christian T Happi Scott Hazelhurst Branwen J Hennig Christiane Hertz- Fowler Winston Hide Friedhelm Hilderbrandt Christopher Hugo-Hamman Muntaser E Ibrahim Regina James Yasmina Jaufeerally-Fakim Carolyn Jenkins Ute Jentsch Pan-Pan Jiang Moses Joloba Victor Jongeneel Fourie Joubert Mukthar Kader Kathleen Kahn Pontiano Kaleebu Saidi H Kapiga Samar Kamal Kassim Ishmael Kasvosve Jonathan Kayondo Bernard Keavney Adeodata Kekitiinwa Sheik Humarr Khan Paul Kimmel Mary-Claire King Robert Kleta Mathurin Koffi Jeffrey Kopp Matthias Kretzler Judit Kumuthini Samuel Kyobe Catherine Kyobutungi Daniel T Lackland Karen A Lacourciere Guida Landouré Rita Lawlor Thomas Lehner Maia Lesosky Naomi Levitt Katherine Littler Zane Lombard Jeanne F Loring Sylvester Lyantagaye Annette Macleod Ebony B Madden Chengetai R Mahomva Julie Makani Manmak Mamven Marape Marape Graeme Mardon Patricia Marshall Darren P Martin Daniel Masiga Robin Mason Michael Mate-Kole Enock Matovu Mary Mayige Bongani M Mayosi Jean Claude Mbanya Sheryl A McCurdy Mark I McCarthy Helen McIlleron S O Mc'Ligeyo Corrine Merle Ana Olga Mocumbi Charles Mondo John V Moran Ayesha Motala Marva Moxey-Mims Wata Sununguko Mpoloka Chisomo L Msefula Thuli Mthiyane Nicola Mulder Gebregziab her Mulugeta Dieuodonne Mumba John Musuku Mo Nagdee Oyekanmi Nash Daouda Ndiaye Anh Quynh Nguyen Mark Nicol Oathokwa Nkomazana Shane Norris Betty Nsangi Alexander Nyarko Moffat Nyirenda Eileen Obe Reginald Obiakor Abraham Oduro Solomon F Ofori-Acquah Okechukwu Ogah Stephen Ogendo Kwaku Ohene-Frempong Akinlolu Ojo Timothy Olanrewaju John Oli Charlotte Osafo Odile Ouwe Missi Oukem-Boyer Bruce Ovbiagele Andrew Owen Mayowa Ojo Owolabi Lukman Owolabi Ellis Owusu-Dabo Guillaume Pare Rulan Parekh Hugh G Patterton Margaret B Penno Jane Peterson Rembert Pieper Jacob Plange-Rhule Martin Pollak Julia Puzak Rajkumar S Ramesar Michele Ramsay Rebekah Rasooly Shiksha Reddy Pardis C Sabeti Kwamena Sagoe Tunde Salako Oumar Samassékou Manjinder S Sandhu Osman Sankoh Fred Stephen Sarfo Marie Sarr Gasnat Shaboodien Issa Sidibe Gustave Simo Martin Simuunza Liam Smeeth Eugene Sobngwi Himla Soodyall Hermann Sorgho Oumou Sow Bah Sudha Srinivasan Dan J Stein Ezra S Susser Carmen Swanepoel Godfred Tangwa Andrew Tareila Ozlem Tastan Bishop Bamidele Tayo Nicki Tiffin Halidou Tinto Ekaete Tobin Stephen Meir Tollman Mahamadou Traoré Marsha J Treadwell Jennifer Troyer Masego Tsimako-Johnstone Vincent Tukei Ifeoma Ulasi Nzovu Ulenga Beverley van Rooyen Ablo Prudence Wachinou Salina P Waddy Alisha Wade Misaki Wayengera James Whitworth Louise Wideroff Cheryl A Winkler Sarah Winnicki Ambroise Wonkam Mengistu Yewondwos Tadase sen Nathan Yozwiak Heather Zar

Science 2014 Jun;344(6190):1346-8

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http://dx.doi.org/10.1126/science.1251546DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4138491PMC
June 2014

Genome-wide analysis of cancer/testis gene expression.

Proc Natl Acad Sci U S A 2008 Dec 16;105(51):20422-7. Epub 2008 Dec 16.

Department of Biostatistics, Harvard School of Public Health, 655 Huntington Avenue, SPH2, 4th Floor, Boston, MA 02115, USA.

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http://dx.doi.org/10.1073/pnas.0810777105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2603434PMC
December 2008

Vertebrate conserved non coding DNA regions have a high persistence length and a short persistence time.

BMC Genomics 2007 Oct 31;8:398. Epub 2007 Oct 31.

Computational Cancer Genomics Group, Swiss Institute of Bioinformatics, Lausanne, Switzerland.

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http://dx.doi.org/10.1186/1471-2164-8-398DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2211324PMC
October 2007

MyHits: improvements to an interactive resource for analyzing protein sequences.

Nucleic Acids Res 2007 Jul 1;35(Web Server issue):W433-7. Epub 2007 Jun 1.

Swiss Institute of Bioinformatics (SIB), Vital-IT Group, UNIL-Génopode, CH-1015 Lausanne, Switzerland.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkm352DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1933190PMC
July 2007

Indexing strategies for rapid searches of short words in genome sequences.

PLoS One 2007 Jun 27;2(6):e579. Epub 2007 Jun 27.

Ludwig Institute for Cancer Research, Bâtiment Génopode, Université de Lausanne, Lausanne, Switzerland; Swiss Institute of Bioinformatics, Bátiment Génopode, Université de Lausanne, Lausanne, Switzerland. Christian.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0000579PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1894650PMC
June 2007

Rapid evolution of cancer/testis genes on the X chromosome.

BMC Genomics 2007 May 23;8:129. Epub 2007 May 23.

Ludwig Institute for Cancer Research and Swiss Institute of Bioinformatics, Lausanne, Switzerland.

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http://dx.doi.org/10.1186/1471-2164-8-129DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1890293PMC
May 2007

Similarities and differences of polyadenylation signals in human and fly.

BMC Genomics 2006 Jul 12;7:176. Epub 2006 Jul 12.

Swiss Institute of Bioinformatics, Batiment Genopode, UNIL, 1015 Lausanne, Switzerland.

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http://dx.doi.org/10.1186/1471-2164-7-176DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1574307PMC
July 2006

Identification of a new cancer/testis gene family, CT47, among expressed multicopy genes on the human X chromosome.

Genes Chromosomes Cancer 2006 Apr;45(4):392-400

Weill Medical College of Cornell University, New York, New York 10021, USA.

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http://dx.doi.org/10.1002/gcc.20298DOI Listing
April 2006

Gene expression variation and expression quantitative trait mapping of human chromosome 21 genes.

Hum Mol Genet 2005 Dec 26;14(23):3741-9. Epub 2005 Oct 26.

Department of Genetic Medicine and Development, Geneva University Medical School, Geneva, Switzerland.

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http://dx.doi.org/10.1093/hmg/ddi404DOI Listing
December 2005

An atlas of human gene expression from massively parallel signature sequencing (MPSS).

Genome Res 2005 Jul;15(7):1007-14

Office of Information Technology, Ludwig Institute for Cancer Research, and Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.

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http://dx.doi.org/10.1101/gr.4041005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1172045PMC
July 2005

Rapid and selective surveillance of Arabidopsis thaliana genome annotations with Centrifuge.

Bioinformatics 2005 Jun 7;21(12):2906-8. Epub 2005 Apr 7.

Gene Expression Laboratory, Plant Molecular Biology, University of Lausanne, Biology Building, 1015 Lausanne, Switzerland.

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http://dx.doi.org/10.1093/bioinformatics/bti435DOI Listing
June 2005

Identification of the gonad-specific anion transporter SLCO6A1 as a cancer/testis (CT) antigen expressed in human lung cancer.

Cancer Immun 2004 Nov 17;4:13. Epub 2004 Nov 17.

Ludwig Institute for Cancer Research, New York Branch at Memorial Sloan-Kettering Cancer Center, 1275 York Avenue, New York, NY 10021, USA.

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November 2004

MyHits: a new interactive resource for protein annotation and domain identification.

Nucleic Acids Res 2004 Jul;32(Web Server issue):W332-5

Swiss Institute of Bioinformatics, CH-1066 Epalinges/Lausanne, Switzerland.

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http://dx.doi.org/10.1093/nar/gkh479DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC441617PMC
July 2004

Digital expression profiles of human endogenous retroviral families in normal and cancerous tissues.

Cancer Immun 2004 Feb 11;4. Epub 2004 Feb 11.

Ludwig Institute for Cancer Research, Office of Information Technology, Epalinges, Switzerland.

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February 2004

trome, trEST and trGEN: databases of predicted protein sequences.

Nucleic Acids Res 2004 Jan;32(Database issue):D509-11

Swiss Institute of Bioinformatics, Ludwig Institute for Cancer Research, Chemin des Boveresses 155, 1066 Epalinges s/Lausanne, Switzerland.

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http://dx.doi.org/10.1093/nar/gkh067DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC308801PMC
January 2004

The generation and utilization of a cancer-oriented representation of the human transcriptome by using expressed sequence tags.

Authors:
Helena Brentani Otávia L Caballero Anamaria A Camargo Aline M da Silva Wilson Araújo da Silva Emmanuel Dias Neto Marco Grivet Arthur Gruber Pedro Edson Moreira Guimaraes Winston Hide Christian Iseli C Victor Jongeneel Janet Kelso Maria Aparecida Nagai Elida Paula Benquique Ojopi Elisson C Osorio Eduardo M R Reis Gregory J Riggins Andrew John George Simpson Sandro de Souza Brian J Stevenson Robert L Strausberg Eloiza H Tajara Sergio Verjovski-Almeida Marcio Luis Acencio Mário Henrique Bengtson Fabiana Bettoni Walter F Bodmer Marcelo R S Briones Luiz Paulo Camargo Webster Cavenee Janete M Cerutti Luis Eduardo Coelho Andrade Paulo César Costa dos Santos Maria Cristina Ramos Costa Israel Tojal da Silva Marcos Roberto H Estécio Karine Sa Ferreira Frank B Furnari Milton Faria Pedro A F Galante Gustavo S Guimaraes Adriano Jesus Holanda Edna Teruko Kimura Maarten R Leerkes Xin Lu Rui M B Maciel Elizabeth A L Martins Katlin Brauer Massirer Analy S A Melo Carlos Alberto Mestriner Elisabete Cristina Miracca Leandro Lorenco Miranda Francisco G Nobrega Paulo S Oliveira Apua C M Paquola José Rodrigo C Pandolfi Maria Ines de Moura Campos Pardini Fabio Passetti John Quackenbush Beatriz Schnabel Mari Cleide Sogayar Jorge E Souza Sandro R Valentini Andre C Zaiats Elisabete Jorge Amaral Liliane A T Arnaldi Amelia Goes de Araújo Simone Aparecida de Bessa David C Bicknell Maria Eugenia Ribeiro de Camaro Dirce Maria Carraro Helaine Carrer Alex F Carvalho Christian Colin Fernando Costa Cyntia Curcio Ismael Dale Cotrim Guerreiro da Silva Neusa Pereira da Silva Márcia Dellamano Hamza El-Dorry Enilza Maria Espreafico Ari José Scattone Ferreira Cristiane Ayres Ferreira Maria Angela H Z Fortes Angelita Habr Gama Daniel Giannella-Neto Maria Lúcia C C Giannella Ricardo R Giorgi Gustavo Henrique Goldman Maria Helena S Goldman Christine Hackel Paulo Lee Ho Elza Myiuki Kimura Luiz Paulo Kowalski Jose E Krieger Luciana C C Leite Ademar Lopes Ana Mercedes S C Luna Alan Mackay Suely Kazue Nagahashi Mari Adriana Aparecida Marques Waleska K Martins André Montagnini Mario Mourão Neto Ana Lucia T O Nascimento A Munro Neville Marina P Nobrega Mike J O'Hare Audrey Yumi Otsuka Anna Izabel Ruas de Melo Maria Luisa Paco-Larson Gonçalo Guimarães Pereira Neusa Pereira da Silva Joao Bosco Pesquero Juliana Gilbert Pessoa Paula Rahal Claudia Aparecida Rainho Vanderlei Rodrigues Silvia Regina Rogatto Camila Malta Romano Janaina Gusmao Romeiro Benedito Mauro Rossi Monica Rusticci Renata Guerra de Sá Simone Cristina Sant' Anna Miriam L Sarmazo Teresa Cristina de Lima E Silva Fernando Augusto Soares Maria de Fátima Sonati Josane de Freitas Sousa Diana Queiroz Valéria Valente André Luiz Vettore Fabiola Elizabeth Villanova Marco Antonio Zago Heloisa Zalcberg

Proc Natl Acad Sci U S A 2003 Nov 30;100(23):13418-23. Epub 2003 Oct 30.

Laboratorio de Genética Molecular do Cancer, Departmento de Radiologia, Universidade de São Paulo, Travessa da Rua Dr. Ovídeo Pires de Campos S/N, 4deg, Brazil.

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http://dx.doi.org/10.1073/pnas.1233632100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC263829PMC
November 2003

High frequency of alternative splicing of human genes participating in the HIV-1 life cycle: a model using TSG101, betaTrCP, PPIA, INI1, NAF1, and PML.

J Acquir Immune Defic Syndr 2003 Oct;34(2):127-33

Division of Infectious Diseases and Institute of Microbiology, University Hospital of Lausanne, Switzerland.

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http://dx.doi.org/10.1097/00126334-200310010-00002DOI Listing
October 2003

Swiss EMBnet node web server.

Nucleic Acids Res 2003 Jul;31(13):3782-3

Swiss Institute of Bioinformatics, CH-1066 Epalinges, Lausanne, Switzerland.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC168954PMC
http://dx.doi.org/10.1093/nar/gkg547DOI Listing
July 2003

Use of transcriptome data to unravel the fine structure of genes involved in sepsis.

J Infect Dis 2003 Jun;187 Suppl 2:S308-14

Office of Information Technology, Ludwig Institute for Cancer Research, and Swiss Institute of Bioinformatics, Epalinges, Switzerland.

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http://dx.doi.org/10.1086/374755DOI Listing
June 2003

Comprehensive sampling of gene expression in human cell lines with massively parallel signature sequencing.

Proc Natl Acad Sci U S A 2003 Apr 1;100(8):4702-5. Epub 2003 Apr 1.

Office of Information Technology, Ludwig Institute for Cancer Research, and Swiss Institute of Bioinformatics, 1066 Epalinges, Switzerland.

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http://dx.doi.org/10.1073/pnas.0831040100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC153619PMC
April 2003

Numerous potentially functional but non-genic conserved sequences on human chromosome 21.

Nature 2002 Dec;420(6915):578-82

Division of Medical Genetics, 1 Rue Michel-Servet, University of Geneva Medical School and University Hospitals of Geneva, CH-1211 Geneva, Switzerland.

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http://dx.doi.org/10.1038/nature01251DOI Listing
December 2002