Victor A Albert

Victor A Albert

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Author Correction: Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch.

Nat Genet 2019 Jul;51(7):1187-1189

Division of Plant Biology, Department of Biosciences, University of Helsinki, Helsinki, Finland.

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http://dx.doi.org/10.1038/s41588-019-0442-7DOI Listing
July 2019

Sequence Search and Comparative Genomic Analysis of SUMO-Activating Enzymes Using CoGe.

Methods Mol Biol 2016 ;1450:261-72

Department of Biological Sciences, SUNY-University at Buffalo, 109 Cooke Hall, Buffalo, NY, 14260-4610, USA.

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http://link.springer.com/10.1007/978-1-4939-3759-2_21
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http://dx.doi.org/10.1007/978-1-4939-3759-2_21DOI Listing
December 2017

Studying Evolutionary Dynamics of Gene Families Encoding SUMO-Activating Enzymes with SeaView and ProtTest.

Methods Mol Biol 2016 ;1450:273-84

Department of Biological Sciences, SUNY-University at Buffalo, 109 Cooke Hall, Buffalo, NY, 14260-4610, USA.

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http://dx.doi.org/10.1007/978-1-4939-3759-2_22DOI Listing
December 2017

Dissecting functions of SEPALLATA-like MADS box genes in patterning of the pseudanthial inflorescence of Gerbera hybrida.

New Phytol 2017 Nov 25;216(3):939-954. Epub 2017 Jul 25.

Department of Agricultural Sciences, Viikki Plant Science Centre, University of Helsinki, PO Box 27, Helsinki, FI-00014, Finland.

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http://dx.doi.org/10.1111/nph.14707DOI Listing
November 2017

Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch.

Nat Genet 2017 Jun 8;49(6):904-912. Epub 2017 May 8.

Division of Plant Biology, Department of Biosciences, University of Helsinki, Helsinki, Finland.

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http://dx.doi.org/10.1038/ng.3862DOI Listing
June 2017

Functional characterization and expression of GASCL1 and GASCL2, two anther-specific chalcone synthase like enzymes from Gerbera hybrida.

Phytochemistry 2017 Feb 21;134:38-45. Epub 2016 Nov 21.

Department of Agricultural Sciences, Viikki Plant Science Centre, P.O. Box 27, University of Helsinki, Helsinki, FIN-00014, Finland. Electronic address:

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http://dx.doi.org/10.1016/j.phytochem.2016.11.002DOI Listing
February 2017

Evolutionary Co-Option of Floral Meristem Identity Genes for Patterning of the Flower-Like Asteraceae Inflorescence.

Plant Physiol 2016 09 5;172(1):284-96. Epub 2016 Jul 5.

Department of Agricultural Sciences, Viikki Plant Science Centre, University of Helsinki, Helsinki 00014, Finland (Y.Z., T.Z., S.K.B., S.T., K.M., T.H.T., P.E.); andDepartment of Biological Sciences, University at Buffalo, Buffalo, New York 14260 (V.A.A.)

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http://dx.doi.org/10.1104/pp.16.00779DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5074612PMC
September 2016

Deep sequencing of the Mexican avocado transcriptome, an ancient angiosperm with a high content of fatty acids.

BMC Genomics 2015 Aug 13;16:599. Epub 2015 Aug 13.

Laboratorio Nacional de Genómica para la Biodiversidad-Langebio/Unidad de Genómica Avanzada UGA, Centro de Investigación y Estudios Avanzados del IPN, 36500, Irapuato, Guanajuato, Mexico.

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http://dx.doi.org/10.1186/s12864-015-1775-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4533766PMC
August 2015

A genome to unveil the mysteries of orchids.

Nat Genet 2015 Jan;47(1):3-4

Department of Biological Sciences, University at Buffalo, Buffalo, New York, USA.

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http://dx.doi.org/10.1038/ng.3179DOI Listing
January 2015

Functional diversification of duplicated CYC2 clade genes in regulation of inflorescence development in Gerbera hybrida (Asteraceae).

Plant J 2014 Sep 15;79(5):783-96. Epub 2014 Jul 15.

Department of Agricultural Sciences, University of Helsinki, PO Box 27, FI-00014, Helsinki, Finland.

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http://dx.doi.org/10.1111/tpj.12583DOI Listing
September 2014

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis.

Science 2014 Sep 4;345(6201):1181-4. Epub 2014 Sep 4.

Institut de Recherche pour le Développement (IRD), UMR Résistance des Plantes aux Bioagresseurs (RPB) [Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), IRD, UM2)], BP 64501, 34394 Montpellier Cedex 5, France.

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http://albuquerque.bioinformatics.uottawa.ca/Papers/JournalP
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http://www.sciencemag.org/cgi/doi/10.1126/science.1255274
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http://dx.doi.org/10.1126/science.1255274DOI Listing
September 2014

Evolution of a hot genome.

Proc Natl Acad Sci U S A 2014 Apr 27;111(14):5069-70. Epub 2014 Mar 27.

Department of Biological Sciences, University at Buffalo, Buffalo, NY 14260.

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http://dx.doi.org/10.1073/pnas.1402378111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3986172PMC
April 2014

Functional diversification of duplicated chalcone synthase genes in anthocyanin biosynthesis of Gerbera hybrida.

New Phytol 2014 Mar 25;201(4):1469-83. Epub 2013 Nov 25.

Department of Agricultural Sciences, University of Helsinki, PO Box 27, FI-00014, Helsinki, Finland.

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http://dx.doi.org/10.1111/nph.12610DOI Listing
March 2014

Molecular evolutionary mechanisms driving functional diversification of the HSP90A family of heat shock proteins in eukaryotes.

Mol Biol Evol 2013 Sep 27;30(9):2035-43. Epub 2013 Jun 27.

Institute for Plant Molecular and Cell Biology - IBMCP (CSIC-UPV), Integrative Systems Biology Group, Valencia, Spain.

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http://dx.doi.org/10.1093/molbev/mst113DOI Listing
September 2013

Evolutionary diversification and characterization of the eubacterial gene family encoding DXR type II, an alternative isoprenoid biosynthetic enzyme.

BMC Evol Biol 2013 Sep 3;13:180. Epub 2013 Sep 3.

Institute for Plant Molecular and Cell Biology - IBMCP (CSIC-UPV), Integrative Systems Biology Group, C/ Ingeniero Fausto Elio s/n,, Valencia 46022, Spain.

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http://dx.doi.org/10.1186/1471-2148-13-180DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3847144PMC
September 2013

The Fragaria vesca homolog of suppressor of overexpression of constans1 represses flowering and promotes vegetative growth.

Plant Cell 2013 Sep 13;25(9):3296-310. Epub 2013 Sep 13.

Department of Agricultural Sciences, University of Helsinki, Helsinki FIN-00014 Finland.

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http://dx.doi.org/10.1105/tpc.113.115055DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3809533PMC
September 2013

The double-corolla phenotype in the Hawaiian lobelioid genus Clermontia involves ectopic expression of PISTILLATA B-function MADS box gene homologs.

Evodevo 2012 Nov 1;3(1):26. Epub 2012 Nov 1.

Department of Biological Sciences, University at Buffalo, Buffalo, NY, 14260, USA.

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http://dx.doi.org/10.1186/2041-9139-3-26DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3564722PMC
November 2012

Evolution and diversification of the CYC/TB1 gene family in Asteraceae--a comparative study in Gerbera (Mutisieae) and sunflower (Heliantheae).

Mol Biol Evol 2012 Apr 18;29(4):1155-66. Epub 2011 Nov 18.

Department of Agricultural Sciences, Latokartanonkaari 7, University of Helsinki, Helsinki, Finland.

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http://dx.doi.org/10.1093/molbev/msr283DOI Listing
April 2012

Is GC bias in the nuclear genome of the carnivorous plant Utricularia driven by ROS-based mutation and biased gene conversion?

Plant Signal Behav 2011 Nov 1;6(11):1631-4. Epub 2011 Nov 1.

Laboratorio Nacional de Genómica para la Biodiversidad, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Irapuato, Guanajuato, Mexico.

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http://dx.doi.org/10.4161/psb.6.11.17657DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3329322PMC
November 2011

Dynamic distribution patterns of ribosomal DNA and chromosomal evolution in Paphiopedilum, a lady's slipper orchid.

BMC Plant Biol 2011 Sep 12;11:126. Epub 2011 Sep 12.

Department of Biological Sciences, University at Buffalo, Buffalo, NY 14260, USA.

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http://dx.doi.org/10.1186/1471-2229-11-126DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3184063PMC
September 2011

Over-expression of the Gerbera hybrida At-SOC1-like1 gene Gh-SOC1 leads to floral organ identity deterioration.

Ann Bot 2011 Jun 13;107(9):1491-9. Epub 2011 May 13.

Gerbera Laboratory, Department of Agricultural Sciences, PO Box 27 (Latokartanonkaari 7), FIN-00014 University of Helsinki, Finland.

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http://dx.doi.org/10.1093/aob/mcr112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3108810PMC
June 2011

Transcriptomics and molecular evolutionary rate analysis of the bladderwort (Utricularia), a carnivorous plant with a minimal genome.

BMC Plant Biol 2011 Jun 3;11:101. Epub 2011 Jun 3.

Laboratorio Nacional de Genómica para la Biodiversidad, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Guanajuato, México.

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http://dx.doi.org/10.1186/1471-2229-11-101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3141634PMC
June 2011

The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.

Authors:
Jo Ann Banks Tomoaki Nishiyama Mitsuyasu Hasebe John L Bowman Michael Gribskov Claude dePamphilis Victor A Albert Naoki Aono Tsuyoshi Aoyama Barbara A Ambrose Neil W Ashton Michael J Axtell Elizabeth Barker Michael S Barker Jeffrey L Bennetzen Nicholas D Bonawitz Clint Chapple Chaoyang Cheng Luiz Gustavo Guedes Correa Michael Dacre Jeremy DeBarry Ingo Dreyer Marek Elias Eric M Engstrom Mark Estelle Liang Feng Cédric Finet Sandra K Floyd Wolf B Frommer Tomomichi Fujita Lydia Gramzow Michael Gutensohn Jesper Harholt Mitsuru Hattori Alexander Heyl Tadayoshi Hirai Yuji Hiwatashi Masaki Ishikawa Mineko Iwata Kenneth G Karol Barbara Koehler Uener Kolukisaoglu Minoru Kubo Tetsuya Kurata Sylvie Lalonde Kejie Li Ying Li Amy Litt Eric Lyons Gerard Manning Takeshi Maruyama Todd P Michael Koji Mikami Saori Miyazaki Shin-ichi Morinaga Takashi Murata Bernd Mueller-Roeber David R Nelson Mari Obara Yasuko Oguri Richard G Olmstead Naoko Onodera Bent Larsen Petersen Birgit Pils Michael Prigge Stefan A Rensing Diego Mauricio Riaño-Pachón Alison W Roberts Yoshikatsu Sato Henrik Vibe Scheller Burkhard Schulz Christian Schulz Eugene V Shakirov Nakako Shibagaki Naoki Shinohara Dorothy E Shippen Iben Sørensen Ryo Sotooka Nagisa Sugimoto Mamoru Sugita Naomi Sumikawa Milos Tanurdzic Günter Theissen Peter Ulvskov Sachiko Wakazuki Jing-Ke Weng William W G T Willats Daniel Wipf Paul G Wolf Lixing Yang Andreas D Zimmer Qihui Zhu Therese Mitros Uffe Hellsten Dominique Loqué Robert Otillar Asaf Salamov Jeremy Schmutz Harris Shapiro Erika Lindquist Susan Lucas Daniel Rokhsar Igor V Grigoriev

Science 2011 May 5;332(6032):960-3. Epub 2011 May 5.

Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN 47907, USA.

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http://sites.psu.edu/axtell/wp-content/uploads/sites/21458/2
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http://www.sciencemag.org/cgi/doi/10.1126/science.1203810
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http://dx.doi.org/10.1126/science.1203810DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3166216PMC
May 2011

Scaffold filling, contig fusion and comparative gene order inference.

BMC Bioinformatics 2010 Jun 4;11:304. Epub 2010 Jun 4.

Department of Mathematics and Statistics, University of Ottawa, Ottawa, K1N 6N5, Canada.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-11-304DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2902449PMC
June 2010

Characterization of SQUAMOSA-like genes in Gerbera hybrida, including one involved in reproductive transition.

BMC Plant Biol 2010 Jun 25;10:128. Epub 2010 Jun 25.

Gerbera Laboratory, Department of Agricultural Sciences, University of Helsinki, Finland.

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http://dx.doi.org/10.1186/1471-2229-10-128DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3017819PMC
June 2010

Large scale interaction analysis predicts that the Gerbera hybrida floral E function is provided both by general and specialized proteins.

BMC Plant Biol 2010 Jun 25;10:129. Epub 2010 Jun 25.

Gerbera Laboratory, Department of Applied Biology PO Box 27, Latokartanonkaari 7, FIN-00014 University of Helsinki, Finland.

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http://dx.doi.org/10.1186/1471-2229-10-129DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3017775PMC
June 2010

The carnivorous bladderwort (Utricularia, Lentibulariaceae): a system inflates.

J Exp Bot 2010 ;61(1):5-9

Department of Biological Sciences, University at Buffalo, Buffalo, New York 14260, USA.

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http://dx.doi.org/10.1093/jxb/erp349DOI Listing
March 2010

Towards improved reconstruction of ancestral gene order in angiosperm phylogeny.

J Comput Biol 2009 Oct;16(10):1353-67

Department of Mathematics, University of Ottawa, 585 King Edward Avenue, Ottawa, Ontario, Canada.

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http://dx.doi.org/10.1089/cmb.2009.0103DOI Listing
October 2009

The effect of massive gene loss following whole genome duplication on the algorithmic reconstruction of the ancestral populus diploid.

Comput Syst Bioinformatics Conf 2008 ;7:261-71

Department of Biology, University of Ottawa, Ottawa, Ontario KIN 6N5, Canada.

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August 2009

Transcriptional signatures of ancient floral developmental genetics in avocado (Persea americana; Lauraceae).

Proc Natl Acad Sci U S A 2009 Jun 18;106(22):8929-34. Epub 2009 May 18.

Department of Biology and Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA.

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http://www.pnas.org/cgi/doi/10.1073/pnas.0811476106
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http://dx.doi.org/10.1073/pnas.0811476106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2683881PMC
June 2009

Gene loss under neighborhood selection following whole genome duplication and the reconstruction of the ancestral Populus genome.

J Bioinform Comput Biol 2009 Jun;7(3):499-520

Department of Biology, University of Ottawa, Ottawa, Ontario K1N 6N5, Canada.

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June 2009

Cytokinin signaling regulates cambial development in poplar.

Proc Natl Acad Sci U S A 2008 Dec 8;105(50):20032-7. Epub 2008 Dec 8.

Department of Biological and Environmental Sciences/Institute of Biotechnology, University of Helsinki, 00790 Helsinki, Finland.

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http://dx.doi.org/10.1073/pnas.0805617106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2604918PMC
December 2008

A TCP domain transcription factor controls flower type specification along the radial axis of the Gerbera (Asteraceae) inflorescence.

Proc Natl Acad Sci U S A 2008 Jul 23;105(26):9117-22. Epub 2008 Jun 23.

Department of Applied Biology, P.O. Box 27, University of Helsinki, Helsinki FIN-00014, Finland.

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http://www.pnas.org/lookup/doi/10.1073/pnas.0801359105
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http://dx.doi.org/10.1073/pnas.0801359105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2449374PMC
July 2008

Persea americana (avocado): bringing ancient flowers to fruit in the genomics era.

Bioessays 2008 Apr;30(4):386-96

Department of Botany, University of Florida, Gainesville, FL, USA.

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http://dx.doi.org/10.1002/bies.20721DOI Listing
April 2008

The floral genome: an evolutionary history of gene duplication and shifting patterns of gene expression.

Trends Plant Sci 2007 Aug 19;12(8):358-67. Epub 2007 Jul 19.

Department of Botany and the Genetics Institute, University of Florida, Gainesville, FL 32611, USA.

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http://dx.doi.org/10.1016/j.tplants.2007.06.012DOI Listing
August 2007

Polyglutamine variation in a flowering time protein correlates with island age in a Hawaiian plant radiation.

BMC Evol Biol 2007 Jul 2;7:105. Epub 2007 Jul 2.

Natural History Museum, University of Oslo, Blindern, Oslo, Norway.

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http://dx.doi.org/10.1186/1471-2148-7-105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1939987PMC
July 2007

Reproductive meristem fates in Gerbera.

J Exp Bot 2006 5;57(13):3445-55. Epub 2006 Oct 5.

Gerbera Laboratory, Department of Applied Biology, PO Box 27, 00014 University of Helsinki, Finland.

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http://jxb.oxfordjournals.org/content/57/13/3445.full.pdf
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http://jxb.oxfordjournals.org/lookup/doi/10.1093/jxb/erl181
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http://dx.doi.org/10.1093/jxb/erl181DOI Listing
March 2007

Molecular diversity of alveolates associated with neritic north atlantic radiolarians.

Protist 2007 Jan 3;158(1):65-76. Epub 2006 Nov 3.

Natural History Museum, University of Oslo, P.O. Box 1172, Blindern, 0318 Oslo, Norway.

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http://dx.doi.org/10.1016/j.protis.2006.07.004DOI Listing
January 2007

Mining plant diversity: Gerbera as a model system for plant developmental and biosynthetic research.

Bioessays 2006 Jul;28(7):756-67

Gerbera Laboratory, Department of Applied Biology, University of Helsinki, Finland.

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http://dx.doi.org/10.1002/bies.20439DOI Listing
July 2006

Patterns of MADS-box gene expression mark flower-type development in Gerbera hybrida (Asteraceae).

BMC Plant Biol 2006 Jun 9;6:11. Epub 2006 Jun 9.

Department of Applied Biology, P.O.Box 27, 00014 University of Helsinki, Finland.

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http://dx.doi.org/10.1186/1471-2229-6-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1525168PMC
June 2006

Phylogenetic diversification of glycogen synthase kinase 3/SHAGGY-like kinase genes in plants.

BMC Plant Biol 2006 Feb 21;6. Epub 2006 Feb 21.

Department of Botany, University of Florida, Gainesville, FL 32611, USA.

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http://dx.doi.org/10.1186/1471-2229-6-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1524769PMC
February 2006

Life history evolution and genome size in subtribe Oncidiinae (Orchidaceae).

Ann Bot 2005 Jan;95(1):191-9

Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3DS, UK.

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http://dx.doi.org/10.1093/aob/mci012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4246717PMC
January 2005

Adaptive evolution of cytochrome c oxidase: Infrastructure for a carnivorous plant radiation.

Proc Natl Acad Sci U S A 2004 Dec 13;101(52):18064-8. Epub 2004 Dec 13.

Department of Plant Biology, Cornell University, Ithaca, NY 14853, USA.

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http://dx.doi.org/10.1073/pnas.0408092101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC539784PMC
December 2004

Integration of reproductive meristem fates by a SEPALLATA-like MADS-box gene.

Proc Natl Acad Sci U S A 2004 Nov 25;101(44):15817-22. Epub 2004 Oct 25.

Institute of Biotechnology, University of Helsinki, P.O. Box 56, FIN-00014 Helsinki, Finland.

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http://dx.doi.org/10.1073/pnas.0406844101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC524820PMC
November 2004

Northern hemisphere biogeography of Cerastium (Caryophyllaceae): insights from phylogenetic analysis of noncoding plastidnucleotide sequences.

Am J Bot 2004 Jun;91(6):943-52

Botanical Garden, Natural History Museums and Botanical Garden, University of Oslo, P.O. 1172 Blindern,N-0318 Oslo, Norway;

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http://doi.wiley.com/10.3732/ajb.91.6.943
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http://dx.doi.org/10.3732/ajb.91.6.943DOI Listing
June 2004

Origin of the Hawaiian endemic mints within North American Stachys (Lamiaceae).

Am J Bot 2002 Oct;89(10):1709-24

Department of Biological Sciences, The University of Alabama, Tuscaloosa, Alabama 35487 USA;

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http://dx.doi.org/10.3732/ajb.89.10.1709DOI Listing
October 2002

Pleiotropy, redundancy and the evolution of flowers.

Trends Plant Sci 2002 Jul;7(7):297-301

Natural History Museums and Botanical Garden, University of Oslo, Sarś gate 1, N-0562 Oslo, Norway.

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July 2002

A trnL-F cpDNA sequence study of the Condamineeae-Rondeletieae-Sipaneeae complex with implications on the phylogeny of the Rubiaceae.

Am J Bot 2002 Jan;89(1):145-59

Botanical institute, Göteborg University, P.O. Box 461, SE-405 30 Göteborg, Sweden;

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http://doi.wiley.com/10.3732/ajb.89.1.145
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http://dx.doi.org/10.3732/ajb.89.1.145DOI Listing
January 2002

Missing links: the genetic architecture of flowers [correction of flower] and floral diversification.

Trends Plant Sci 2002 Jan;7(1):22-31; dicussion 31-4

Dept Botany and Genetics Institute, University of Florida, Gainesville, FL 32611, USA.

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January 2002