Veerabhadran Baladandayuthapani

Veerabhadran Baladandayuthapani

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Veerabhadran Baladandayuthapani

Publications by authors named "Veerabhadran Baladandayuthapani"

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Bayesian data integration and variable selection for pan-cancer survival prediction using protein expression data.

Biometrics 2019 Aug 8. Epub 2019 Aug 8.

Department of Biostatistics, University of Michigan, Ann Arbor, Michigan.

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http://dx.doi.org/10.1111/biom.13132DOI Listing
August 2019

NExUS: Bayesian simultaneous network estimation across unequal sample sizes.

Bioinformatics 2019 Aug 28. Epub 2019 Aug 28.

Department of Biostatistics, University of Michigan, Ann Arbor, MI 48109, USA.

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http://dx.doi.org/10.1093/bioinformatics/btz636DOI Listing
August 2019

Bayesian variable selection with graphical structure learning: Applications in integrative genomics.

PLoS One 2018 30;13(7):e0195070. Epub 2018 Jul 30.

Department of Biostatistics, M.D. Anderson Cancer Research Center, Houston, Texas, 77030, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0195070PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6066211PMC
December 2018

Radiologic image-based statistical shape analysis of brain tumours.

J R Stat Soc Ser C Appl Stat 2018 Nov 15;67(5):1357-1378. Epub 2018 Mar 15.

University of Texas MD Anderson Cancer Center, Houston, USA.

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http://doi.wiley.com/10.1111/rssc.12272
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http://dx.doi.org/10.1111/rssc.12272DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6225782PMC
November 2018

Tree-based Methods for Characterizing Tumor Density Heterogeneity.

Pac Symp Biocomput 2018 ;23:216-227

Statistics Department, Rice University Houston, Texas, 77005, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5749399PMC
August 2018

Functional interaction-based nonlinear models with application to multiplatform genomics data.

Stat Med 2018 08 7;37(18):2715-2733. Epub 2018 May 7.

Department of Biostatistics, University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA.

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http://dx.doi.org/10.1002/sim.7671DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6031473PMC
August 2018

Bayesian Hierarchical Varying-sparsity Regression Models with Application to Cancer Proteogenomics.

J Am Stat Assoc 2019 15;114(525):48-60. Epub 2018 Aug 15.

Department of Biostatistics, The University of Texas MD Anderson Cancer Center.

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http://dx.doi.org/10.1080/01621459.2018.1434529DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6552682PMC
August 2018

iDINGO-integrative differential network analysis in genomics with Shiny application.

Bioinformatics 2018 04;34(7):1243-1245

Department of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.

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http://dx.doi.org/10.1093/bioinformatics/btx750DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6030922PMC
April 2018

Inferring network structure in non-normal and mixed discrete-continuous genomic data.

Biometrics 2018 03 24;74(1):185-195. Epub 2017 Apr 24.

Department of Biostatistics, The University of Texas MD Anderson Cancer Center, 1400 Pressler Dr., Houston,Texas 77030, U.S.A.

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http://doi.wiley.com/10.1111/biom.12711
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http://dx.doi.org/10.1111/biom.12711DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5654714PMC
March 2018

Radiomic analysis in prediction of Human Papilloma Virus status.

Clin Transl Radiat Oncol 2017 Dec 6;7:49-54. Epub 2017 Nov 6.

Department of Biostatistics, The University of Texas M.D. Anderson Cancer Center, United States.

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http://dx.doi.org/10.1016/j.ctro.2017.10.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5862639PMC
December 2017

Rejoinder to statistical contributions to bioinformatics: Design, modelling, structure learning and Integration.

Stat Modelling 2017 Aug 12;17(4-5):338-357. Epub 2017 Sep 12.

Department of Biostatistics, UT MD Anderson Cancer Center, Houston, Texas, USA.

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http://dx.doi.org/10.1177/1471082X17728576DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6052864PMC
August 2017

Cationic liquid crystalline nanoparticles for the delivery of synthetic RNAi-based therapeutics.

Oncotarget 2017 Jul;8(29):48222-48239

Section of Thoracic Molecular Oncology, Department of Thoracic & Cardiovascular Surgery, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, United States.

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http://dx.doi.org/10.18632/oncotarget.18421DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5564640PMC
July 2017

Prediction-Oriented Marker Selection (PROMISE): With Application to High-Dimensional Regression.

Stat Biosci 2017 Jun 26;9(1):217-245. Epub 2016 Sep 26.

Department of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.

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http://dx.doi.org/10.1007/s12561-016-9169-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5543994PMC
June 2017

Statistical Contributions to Bioinformatics: Design, Modeling, Structure Learning, and Integration.

Stat Modelling 2017 15;17(4-5):245-289. Epub 2017 Jun 15.

Department of Biostatistics, The University of Texas M.D. Anderson Cancer Center, Houston, Texas, USA.

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http://dx.doi.org/10.1177/1471082X17698255DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5679480PMC
June 2017

TUSC2(FUS1)-erlotinib Induced Vulnerabilities in Epidermal Growth Factor Receptor(EGFR) Wildtype Non-small Cell Lung Cancer(NSCLC) Targeted by the Repurposed Drug Auranofin.

Sci Rep 2016 11 15;6:35741. Epub 2016 Nov 15.

Section of Thoracic Molecular Oncology, Department of Thoracic and Cardiovascular Surgery, University of Texas (UT) MD Anderson Cancer Center, Houston, TX, USA.

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http://dx.doi.org/10.1038/srep35741DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5109231PMC
November 2016

Lenalidomide, Thalidomide, and Pomalidomide Reactivate the Epstein-Barr Virus Lytic Cycle through Phosphoinositide 3-Kinase Signaling and Ikaros Expression.

Clin Cancer Res 2016 Oct 13;22(19):4901-4912. Epub 2016 Jun 13.

Department of Lymphoma and Myeloma, The University of Texas MD Anderson Cancer Center, Houston, Texas. Department of Experimental Therapeutics, The University of Texas MD Anderson Cancer Center, Houston, Texas.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5050094PMC
http://dx.doi.org/10.1158/1078-0432.CCR-15-2242DOI Listing
October 2016

Functional CAR models for large spatially correlated functional datasets.

J Am Stat Assoc 2016 18;111(514):772-786. Epub 2016 Aug 18.

The University of Texas M.D. Anderson Cancer Center, Houston, Texas, U.S.A.

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http://dx.doi.org/10.1080/01621459.2015.1042581DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5176110PMC
August 2016

Integrative Bayesian analysis of neuroimaging-genetic data with application to cocaine dependence.

Neuroimage 2016 Jan 17;125:813-824. Epub 2015 Oct 17.

Department of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston, TX, USA. Electronic address:

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http://dx.doi.org/10.1016/j.neuroimage.2015.10.033DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5042574PMC
January 2016

DINGO: differential network analysis in genomics.

Bioinformatics 2015 Nov 6;31(21):3413-20. Epub 2015 Jul 6.

Department of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.

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http://dx.doi.org/10.1093/bioinformatics/btv406DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4751246PMC
November 2015

Bayesian nonlinear model selection for gene regulatory networks.

Biometrics 2015 Sep 8;71(3):585-95. Epub 2015 Apr 8.

Department of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston, Texas, U.S.A.

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http://dx.doi.org/10.1111/biom.12309DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4575256PMC
September 2015

Targeting the Spleen Tyrosine Kinase with Fostamatinib as a Strategy against Waldenström Macroglobulinemia.

Clin Cancer Res 2015 Jun 6;21(11):2538-45. Epub 2015 Mar 6.

Department of Lymphoma/Myeloma, The University of Texas MD Anderson Cancer Center, Houston, Texas. Department of Experimental Therapeutics, The University of Texas MD Anderson Cancer Center, Houston, Texas.

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http://dx.doi.org/10.1158/1078-0432.CCR-14-1462DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4737551PMC
June 2015

Performance Evaluation of Material Decomposition With Rapid-Kilovoltage-Switching Dual-Energy CT and Implications for Assessing Bone Mineral Density.

AJR Am J Roentgenol 2015 Jun;204(6):1234-41

1 Department of Imaging Physics, The University of Texas M. D. Anderson Cancer Center, 1155 Pressler, Unit 1352, Houston, TX 77030.

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http://dx.doi.org/10.2214/AJR.14.13093DOI Listing
June 2015

A Two-Sample Test for Equality of Means in High Dimension.

J Am Stat Assoc 2015 Jun;110(510):837-849

Department of Statistics, North Carolina State University, 2311 Stinson Drive, Raleigh, NC 27695-8203

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http://dx.doi.org/10.1080/01621459.2014.934826DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4533933PMC
June 2015

Prognostic gene signature identification using causal structure learning: applications in kidney cancer.

Cancer Inform 2015 27;14(Suppl 1):23-35. Epub 2015 Jan 27.

Department of Biostatistics, The University of Texas, MD Anderson Cancer Center, Houston, TX, USA.

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http://dx.doi.org/10.4137/CIN.S14873DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4362630PMC
April 2015

Selective targeting of Toll-like receptors and OX40 inhibit regulatory T-cell function in follicular lymphoma.

Int J Cancer 2014 Dec 12;135(12):2834-46. Epub 2014 May 12.

Department of Immunology, The University of Texas M.D. Anderson Cancer Center, Houston, TX; Center for Cancer Immunology Research, The University of Texas M.D. Anderson Cancer Center, Houston, TX.

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http://doi.wiley.com/10.1002/ijc.28937
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http://dx.doi.org/10.1002/ijc.28937DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4352105PMC
December 2014

Bayesian joint selection of genes and pathways: applications in multiple myeloma genomics.

Cancer Inform 2014 7;13(Suppl 2):113-23. Epub 2014 Dec 7.

Associate Professor, Department of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.

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http://dx.doi.org/10.4137/CIN.S13787DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4260770PMC
December 2014

Classification, predictive modelling, and statistical analysis of cancer data (a).

Cancer Inform 2014 21;13(Suppl 2):1-3. Epub 2014 Sep 21.

Assistant Professor of Biostatistics, University of Wisconsin-Milwaukee, Milwaukee, WI, USA. Affiliate Investigator, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.

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http://dx.doi.org/10.4137/CIN.S19328DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4179642PMC
October 2014

Integrative bayesian network analysis of genomic data.

Cancer Inform 2014 21;13(Suppl 2):39-48. Epub 2014 Sep 21.

Department of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.

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http://dx.doi.org/10.4137/CIN.S13786DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4179606PMC
October 2014

Bayesian disease classification using copy number data.

Cancer Inform 2014 1;13(Suppl 2):83-91. Epub 2014 Oct 1.

Department of Biostatistics, The University of Texas, MD Anderson Cancer Center, Houston, TX, USA.

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http://dx.doi.org/10.4137/CIN.S13785DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4196891PMC
October 2014

Bayesian hierarchical structured variable selection methods with application to MIP studies in breast cancer.

J R Stat Soc Ser C Appl Stat 2014 Aug;63(4):595-620

Department of Biostatistics, The University of Texas M.D. Anderson Cancer Center, Houston, Texas, U.S.A.

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http://dx.doi.org/10.1111/rssc.12053DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4334391PMC
August 2014

FXR silencing in human colon cancer by DNA methylation and KRAS signaling.

Am J Physiol Gastrointest Liver Physiol 2014 Jan 31;306(1):G48-58. Epub 2013 Oct 31.

Dept. of Pharmacology and Toxicology, School of Pharmacy, Rutgers Univ., Piscataway, NJ 08854.

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http://dx.doi.org/10.1152/ajpgi.00234.2013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3920083PMC
January 2014

Bayesian sparse graphical models and their mixtures.

Stat 2014 Jan;3(1):109-125

Texas A&M University, College Station TX, USA.

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http://dx.doi.org/10.1002/sta4.49DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4059614PMC
January 2014

Bayesian methods for expression-based integration of various types of genomics data.

EURASIP J Bioinform Syst Biol 2013 Sep 21;2013(1):13. Epub 2013 Sep 21.

Department of Biostatistics, UT M,D, Anderson Cancer Center, Houston, TX 77030, USA.

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http://dx.doi.org/10.1186/1687-4153-2013-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3849593PMC
September 2013

Integrating multi-platform genomic data using hierarchical Bayesian relevance vector machines.

EURASIP J Bioinform Syst Biol 2013 Jun 28;2013(1). Epub 2013 Jun 28.

Department of Biostatistics, Division of Quantitative Sciences, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Blvd, Unit 1411, Houston, Texas, USA.

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http://dx.doi.org/10.1186/1687-4153-2013-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3726335PMC
June 2013

iBAG: integrative Bayesian analysis of high-dimensional multiplatform genomics data.

Bioinformatics 2013 Jan 9;29(2):149-59. Epub 2012 Nov 9.

Department of Biostatistics, The University of Texas, MD Anderson Cancer Center, Houston, TX 77030, USA.

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http://dx.doi.org/10.1093/bioinformatics/bts655DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3546799PMC
January 2013

Drug resistance to inhibitors of the human double minute-2 E3 ligase is mediated by point mutations of p53, but can be overcome with the p53 targeting agent RITA.

Mol Cancer Ther 2012 Oct 28;11(10):2243-53. Epub 2012 Aug 28.

Department of Lymphoma and Myeloma, The University of Texas M.D. Anderson Cancer Center, 7455 Fannin St, Unit 403, Houston, TX 77054, USA.

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http://mct.aacrjournals.org/cgi/doi/10.1158/1535-7163.MCT-12
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http://dx.doi.org/10.1158/1535-7163.MCT-12-0135DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3469746PMC
October 2012

Bayesian Random Segmentation Models to Identify Shared Copy Number Aberrations for Array CGH Data.

J Am Stat Assoc 2010 12;105(492):1358-1375

Department of Biostatistics, The University of Texas M.D. Anderson Cancer Center, Houston, Texas 77030.

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http://dx.doi.org/10.1198/jasa.2010.ap09250DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3079218PMC
December 2010

Bayesian hierarchical spatially correlated functional data analysis with application to colon carcinogenesis.

Biometrics 2008 Mar 30;64(1):64-73. Epub 2007 Jun 30.

Department of Biostatistics, Box 447, The University of Texas, MD Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, TX 77030-4009, USA.

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http://dx.doi.org/10.1111/j.1541-0420.2007.00846.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2740995PMC
March 2008

Pathogenesis of a Texas feline immunodeficiency virus isolate: an emerging subtype of clade B.

Vet Microbiol 2006 Jun 29;115(1-3):64-76. Epub 2006 Mar 29.

Department of Biology, Texas A&M University, College Station, TX 77843-3258, United States.

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http://dx.doi.org/10.1016/j.vetmic.2006.02.012DOI Listing
June 2006