Valerio Orlandini

Valerio Orlandini

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Valerio Orlandini

Valerio Orlandini

Publications by authors named "Valerio Orlandini"

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18Publications

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Xome-Blender: A novel cancer genome simulator.

PLoS One 2018 5;13(4):e0194472. Epub 2018 Apr 5.

Department of Experimental and Clinical Medicine, University of Florence, Florence, Italy.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0194472PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5886411PMC
July 2018

SLMSuite: a suite of algorithms for segmenting genomic profiles.

BMC Bioinformatics 2017 Jun 28;18(1):321. Epub 2017 Jun 28.

Department of Experimental and Clinical Medicine, University of Florence, Viale Pieraccini 6, Florence, 50139, Italy.

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http://dx.doi.org/10.1186/s12859-017-1734-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5490196PMC
June 2017

The pangenome of (Antarctic) Pseudoalteromonas bacteria: evolutionary and functional insights.

BMC Genomics 2017 01 17;18(1):93. Epub 2017 Jan 17.

Laboratory of Microbial and Molecular Evolution, Department of Biology, University of Florence, Via Madonna del Piano 6, I-501019, Sesto F.no Florence, Italy.

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http://dx.doi.org/10.1186/s12864-016-3382-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5240218PMC
January 2017

Methods for assembling reads and producing contigs.

Methods Mol Biol 2015 ;1231:151-61

Department of Biology, University of Florence, via Madonna del Piano 6, Sesto Fiorentino, Firenze, 50019, Italy,

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http://dx.doi.org/10.1007/978-1-4939-1720-4_10DOI Listing
June 2015

Network Analysis of Plasmidomes: The Azospirillum brasilense Sp245 Case.

Int J Evol Biol 2014 29;2014:951035. Epub 2014 Dec 29.

Laboratory of Microbial and Molecular Evolution, Department of Biology, University of Florence, Via Madonna del Piano 6, 50019 Sesto Fiorentino, Firenze, Italy.

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http://downloads.hindawi.com/journals/ijeb/2014/951035.pdf
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http://www.hindawi.com/journals/ijeb/2014/951035/
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http://dx.doi.org/10.1155/2014/951035DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4295147PMC
January 2015

Genomic analysis of three sponge-associated Arthrobacter Antarctic strains, inhibiting the growth of Burkholderia cepacia complex bacteria by synthesizing volatile organic compounds.

Microbiol Res 2014 Jul-Aug;169(7-8):593-601. Epub 2013 Oct 20.

Laboratory of Microbial and Molecular Evolution, Department of Biology, University of Florence, Via Madonna del Piano 6, 50019 Sesto Fiorentino, Firenze, Italy. Electronic address:

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http://dx.doi.org/10.1016/j.micres.2013.09.018DOI Listing
December 2014

Origin, duplication and reshuffling of plasmid genes: Insights from Burkholderia vietnamiensis G4 genome.

Genomics 2014 Feb-Mar;103(2-3):229-38. Epub 2014 Feb 24.

Laboratory of Microbial and Molecular Evolution, Department of Biology, Via Madonna del Piano 6, University of Florence, I-50019 Sesto F.no, Firenze, Italy. Electronic address:

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http://dx.doi.org/10.1016/j.ygeno.2014.02.004DOI Listing
December 2014

Enly: Improving Draft Genomes through Reads Recycling.

J Genomics 2014 5;2:89-93. Epub 2014 Apr 5.

1. Dept. of Evolutionary Biology, Via Madonna del Piano 6, 50143 Sesto Fiorentino,Florence, Italy;

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http://dx.doi.org/10.7150/jgen.7298DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4091449PMC
July 2014

Draft genomes of three Antarctic Psychrobacter strains producing antimicrobial compounds against Burkholderia cepacia complex, opportunistic human pathogens.

Mar Genomics 2014 Feb 5;13:37-8. Epub 2014 Jan 5.

Laboratory of Microbial and Molecular Evolution, Department of Biology, University of Florence, Via Madonna del Piano 6, 50019 Sesto Fiorentino, Firenze, Italy.

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http://dx.doi.org/10.1016/j.margen.2013.12.009DOI Listing
February 2014

Phenotypic and genomic characterization of the Antarctic bacterium Gillisia sp. CAL575, a producer of antimicrobial compounds.

Extremophiles 2014 Jan 23;18(1):35-49. Epub 2013 Oct 23.

Laboratory of Microbial and Molecular Evolution, Department of Biology, University of Florence, Via Madonna del Piano 6, 50019, Sesto Fiorentino (Florence), Italy.

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http://dx.doi.org/10.1007/s00792-013-0590-0DOI Listing
January 2014

Draft Genome Sequence of the Fast-Growing Bacterium Vibrio natriegens Strain DSMZ 759.

Genome Announc 2013 Aug 22;1(4). Epub 2013 Aug 22.

Laboratory of Microbial and Molecular Evolution, Department of Biology, University of Florence, Florence, Italy.

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http://dx.doi.org/10.1128/genomeA.00648-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3751608PMC
August 2013

The genome sequence of the hydrocarbon-degrading Acinetobacter venetianus VE-C3.

Res Microbiol 2013 Jun 23;164(5):439-49. Epub 2013 Mar 23.

Laboratory of Microbial and Molecular Evolution, Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino (FI), Italy.

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http://dx.doi.org/10.1016/j.resmic.2013.03.003DOI Listing
June 2013

Draft genome sequence of the hydrocarbon-degrading and emulsan-producing strain Acinetobacter venetianus RAG-1T.

J Bacteriol 2012 Sep;194(17):4771-2

Laboratory of Microbial and Molecular Evolution, Department of Evolutionary Biology, University of Florence, Florence, Italy.

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http://dx.doi.org/10.1128/JB.01019-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3415512PMC
September 2012