Valerie De Crécy-Lagard

Valerie De Crécy-Lagard

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Valerie De Crécy-Lagard

Valerie De Crécy-Lagard

Publications by authors named "Valerie De Crécy-Lagard"

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PMP-diketopiperazine adducts form at the active site of a PLP dependent enzyme involved in formycin biosynthesis.

Chem Commun (Camb) 2019 Nov;55(96):14502-14505

Research Complex at Harwell, Didcot, OX11 0FA, UK.

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http://dx.doi.org/10.1039/c9cc06975eDOI Listing
November 2019

Bacterial RNA Degradosomes: Molecular Machines under Tight Control.

Trends Biochem Sci 2019 Oct 31. Epub 2019 Oct 31.

Helicobacter Pathogenesis Unit, Department of Microbiology, Institut Pasteur, Paris, France. Electronic address:

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http://dx.doi.org/10.1016/j.tibs.2019.10.002DOI Listing
October 2019

tRNA Modification Profiles and Codon-Decoding Strategies in Methanocaldococcus jannaschii.

J Bacteriol 2019 May 9;201(9). Epub 2019 Apr 9.

Rieveschl Laboratories for Mass Spectrometry, Department of Chemistry, University of Cincinnati, Cincinnati, Ohio, USA

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http://dx.doi.org/10.1128/JB.00690-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6456858PMC
May 2019

Matching tRNA modifications in humans to their known and predicted enzymes.

Nucleic Acids Res 2019 03;47(5):2143-2159

Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology, ul. Trojdena 4, 02-109 Warsaw, Poland.

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http://dx.doi.org/10.1093/nar/gkz011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6412123PMC
March 2019

Can Protein Expression Be Regulated by Modulation of tRNA Modification Profiles?

Biochemistry 2019 02 18;58(5):355-362. Epub 2018 Dec 18.

Department of Microbiology and Cell Science , University of Florida , Gainesville , Florida 32603 , United States.

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http://pubs.acs.org/doi/10.1021/acs.biochem.8b01035
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http://dx.doi.org/10.1021/acs.biochem.8b01035DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6363828PMC
February 2019

Newly-discovered enzymes that function in metabolite damage-control.

Curr Opin Chem Biol 2018 12 28;47:101-108. Epub 2018 Sep 28.

Horticultural Sciences Department, University of Florida, Gainesville, FL, USA.

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https://linkinghub.elsevier.com/retrieve/pii/S13675931183006
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http://dx.doi.org/10.1016/j.cbpa.2018.09.014DOI Listing
December 2018

Identification of the minimal bacterial 2'-deoxy-7-amido-7-deazaguanine synthesis machinery.

Mol Microbiol 2018 11 12;110(3):469-483. Epub 2018 Oct 12.

Department of Microbiology and Cell Science, University of Florida, Gainesville, FL, 32611, USA.

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http://dx.doi.org/10.1111/mmi.14113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6207457PMC
November 2018

Gene Graphics: a genomic neighborhood data visualization web application.

Bioinformatics 2018 04;34(8):1406-1408

Department of Microbiology and Cell Science, University of Florida, Gainesville, FL 32611, USA.

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http://dx.doi.org/10.1093/bioinformatics/btx793DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5905594PMC
April 2018

A plastidial pantoate transporter with a potential role in pantothenate synthesis.

Biochem J 2018 02 28;475(4):813-825. Epub 2018 Feb 28.

Horticultural Sciences Department, University of Florida, Gainesville, FL, U.S.A.

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http://dx.doi.org/10.1042/BCJ20170883DOI Listing
February 2018

MODOMICS: a database of RNA modification pathways. 2017 update.

Nucleic Acids Res 2018 01;46(D1):D303-D307

Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, ul. Ks. Trojdena 4, PL-02-109 Warsaw, Poland.

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http://dx.doi.org/10.1093/nar/gkx1030DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753262PMC
January 2018

Deazaguanine derivatives, examples of crosstalk between RNA and DNA modification pathways.

RNA Biol 2017 09 12;14(9):1175-1184. Epub 2016 Dec 12.

a Department of Microbiology and Cell Science , University of Florida , Gainesville , FL , USA.

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http://dx.doi.org/10.1080/15476286.2016.1265200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5699537PMC
September 2017

Discovery of a widespread prokaryotic 5-oxoprolinase that was hiding in plain sight.

J Biol Chem 2017 09 22;292(39):16360-16367. Epub 2017 Aug 22.

From the Horticultural Sciences Department, University of Florida, Gainesville, Florida 32611,

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http://dx.doi.org/10.1074/jbc.M117.805028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5625064PMC
September 2017

Deciphering the Translation Initiation Factor 5A Modification Pathway in Halophilic Archaea.

Archaea 2016 8;2016:7316725. Epub 2016 Dec 8.

Department of Microbiology and Cell Science, Institute for Food and Agricultural Sciences and Genetic Institute, University of Florida, P.O. Box 110700, Gainesville, FL 32611-0700, USA.

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http://dx.doi.org/10.1155/2016/7316725DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5178350PMC
July 2017

A strictly monofunctional bacterial hydroxymethylpyrimidine phosphate kinase precludes damaging errors in thiamin biosynthesis.

Biochem J 2017 Jul 20. Epub 2017 Jul 20.

Horticultural Sciences, University of Florida, Gainesville, Florida, FL 32611-0690, United States

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http://dx.doi.org/10.1042/BCJ20170437DOI Listing
July 2017

tRNA N6-adenosine threonylcarbamoyltransferase defect due to KAE1/TCS3 (OSGEP) mutation manifest by neurodegeneration and renal tubulopathy.

Eur J Hum Genet 2017 05 8;25(5):545-551. Epub 2017 Mar 8.

Monique and Jacques Roboh Department of Genetic Research, Hadassah Medical Center, Hebrew University of Jerusalem, Jerusalem, Israel.

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http://dx.doi.org/10.1038/ejhg.2017.30DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5437908PMC
May 2017

QueF-Like, a Non-Homologous Archaeosine Synthase from the Crenarchaeota.

Biomolecules 2017 04 6;7(2). Epub 2017 Apr 6.

Department of Chemistry, Portland State University, Portland, OR 97207, USA.

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http://dx.doi.org/10.3390/biom7020036DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5485725PMC
April 2017

Identification of a Novel Epoxyqueuosine Reductase Family by Comparative Genomics.

ACS Chem Biol 2017 03 8;12(3):844-851. Epub 2017 Feb 8.

Department of Microbiology and Cell Science, University of Florida , Gainesville, Florida 32611, United States.

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http://dx.doi.org/10.1021/acschembio.6b01100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5495094PMC
March 2017

The Escherichia coli COG1738 Member YhhQ Is Involved in 7-Cyanodeazaguanine (preQ₀) Transport.

Biomolecules 2017 02 8;7(1). Epub 2017 Feb 8.

Department of Microbiology and Cell Science, Institute of Food and Agricultural Sciences, University of Florida, Gainesville, FL 32611, USA.

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http://dx.doi.org/10.3390/biom7010012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5372724PMC
February 2017

tRNAmodpred: A computational method for predicting posttranscriptional modifications in tRNAs.

Methods 2016 09 23;107:34-41. Epub 2016 Mar 23.

Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology, ul. Ks. Trojdena 4, 02-109 Warsaw, Poland; Institute of Molecular Biology and Biotechnology, Adam Mickiewicz University, Umultowska 89, PL-61-614 Poznan, Poland. Electronic address:

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http://dx.doi.org/10.1016/j.ymeth.2016.03.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5014562PMC
September 2016

Functional Annotations of Paralogs: A Blessing and a Curse.

Life (Basel) 2016 Sep 8;6(3). Epub 2016 Sep 8.

Department of Microbiology and Cell Science, Institute of Food and Agricultural Sciences, University of Florida, Gainesville, FL 32611, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5041015PMC
http://dx.doi.org/10.3390/life6030039DOI Listing
September 2016

Members of a Novel Kinase Family (DUF1537) Can Recycle Toxic Intermediates into an Essential Metabolite.

ACS Chem Biol 2016 08 24;11(8):2304-11. Epub 2016 Jun 24.

Department of Microbiology and Cell Science and Genetic Institute, University of Florida , P.O. Box 110700, Gainesville, Florida 32611-0700, United States.

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http://dx.doi.org/10.1021/acschembio.6b00279DOI Listing
August 2016

Assignment of function to a domain of unknown function: DUF1537 is a new kinase family in catabolic pathways for acid sugars.

Proc Natl Acad Sci U S A 2016 07 11;113(29):E4161-9. Epub 2016 Jul 11.

Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801; Department of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801; Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801

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http://dx.doi.org/10.1073/pnas.1605546113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4961189PMC
July 2016

The Response of Acinetobacter baumannii to Zinc Starvation.

Cell Host Microbe 2016 Jun;19(6):826-36

Department of Pathology, Microbiology, and Immunology, Vanderbilt University School of Medicine, Nashville, TN 37232, USA; Tennessee Valley Healthcare Systems, US Department of Veterans Affairs, Nashville, TN 37232, USA. Electronic address:

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http://dx.doi.org/10.1016/j.chom.2016.05.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4901392PMC
June 2016

Metabolite Damage and Metabolite Damage Control in Plants.

Annu Rev Plant Biol 2016 04 19;67:131-52. Epub 2015 Nov 19.

Microbiology and Cell Science Department, University of Florida, Gainesville, Florida 32611; email: ,

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http://dx.doi.org/10.1146/annurev-arplant-043015-111648DOI Listing
April 2016

Evidence that COG0325 proteins are involved in PLP homeostasis.

Microbiology 2016 Apr;162(4):694-706

Department of Microbiology and Cell Science, Institute for Food and Agricultural Sciences and Genetics Institute, University of Florida, Gainesville, FL, USA.

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http://dx.doi.org/10.1099/mic.0.000255DOI Listing
April 2016

Novel genomic island modifies DNA with 7-deazaguanine derivatives.

Proc Natl Acad Sci U S A 2016 Mar 29;113(11):E1452-9. Epub 2016 Feb 29.

Department of Microbiology and Cell Science, University of Florida, Gainesville, FL 32611-0700; University of Florida Genetics Institute, Gainesville, FL 32610

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http://dx.doi.org/10.1073/pnas.1518570113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4801273PMC
March 2016

Bacterial and plant HAD enzymes catalyse a missing phosphatase step in thiamin diphosphate biosynthesis.

Biochem J 2016 Jan 4;473(2):157-66. Epub 2015 Nov 4.

Horticultural Sciences Department, University of Florida, Gainesville, FL 32611, U.S.A.

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http://biochemj.org/cgi/doi/10.1042/BJ20150805
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http://dx.doi.org/10.1042/BJ20150805DOI Listing
January 2016

Global translational impacts of the loss of the tRNA modification tA in yeast.

Microb Cell 2016 Jan;3(1):29-45

Department of Microbiology and Cell Science, University of Florida, Gainesville, FL 32611, USA; University of Florida Genetics Institute, University of Florida, Gainesville, FL 32610, USA.

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http://microbialcell.com/researcharticles/global-translation
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http://dx.doi.org/10.15698/mic2016.01.473DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4717488PMC
January 2016

Proteins of Unknown Biochemical Function: A Persistent Problem and a Roadmap to Help Overcome It.

Plant Physiol 2015 Nov 12;169(3):1436-42. Epub 2015 Aug 12.

Horticultural Sciences Department (T.D.N., A.M.K.T., A.D.H.) and Microbiology and Cell Science Department (V.d.C.-L.), University of Florida, Gainesville, Florida 32611

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http://www.plantphysiol.org/content/169/3/1436.full.pdf
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http://www.plantphysiol.org/lookup/doi/10.1104/pp.15.00959
Publisher Site
http://dx.doi.org/10.1104/pp.15.00959DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4634069PMC
November 2015

Diversity of the biosynthesis pathway for threonylcarbamoyladenosine (t(6)A), a universal modification of tRNA.

RNA Biol 2014 ;11(12):1529-39

a Genetics and Genomics Graduate Program ; University of Florida ; Gainesville , FL USA.

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http://dx.doi.org/10.4161/15476286.2014.992277DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4615747PMC
October 2015

The Levels of a Universally Conserved tRNA Modification Regulate Cell Growth.

J Biol Chem 2015 Jul 10;290(30):18699-707. Epub 2015 Jun 10.

From the Centro de Regulación del Genoma, Facultad de Ciencias, Universidad de Chile, Las Palmeras 3425, Santiago, Chile 7800024 and

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http://dx.doi.org/10.1074/jbc.M115.665406DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4513126PMC
July 2015

Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes.

Front Genet 2015 20;6:148. Epub 2015 Apr 20.

Luxembourg Centre for Systems Biomedicine, University of Luxembourg Esch-sur-Alzette, Luxembourg.

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http://dx.doi.org/10.3389/fgene.2015.00148DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4403557PMC
May 2015

Mannitol-1-phosphate dehydrogenases/phosphatases: a family of novel bifunctional enzymes for bacterial adaptation to osmotic stress.

Environ Microbiol 2015 Mar 4;17(3):711-9. Epub 2014 Jun 4.

Molecular Microbiology & Bioenergetics, Institute of Molecular Biosciences, Johann Wolfgang Goethe University Frankfurt am Main, Frankfurt, Germany.

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http://dx.doi.org/10.1111/1462-2920.12503DOI Listing
March 2015

The emerging role of complex modifications of tRNA in signaling pathways.

Microb Cell 2015 Jan;2(1):1-4

University of Florida Genetics Institute, Gainesville, Florida, USA. ; Department of Microbiology and Cell Science, University of Florida, Gainesville, Florida, USA.

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http://dx.doi.org/10.15698/mic2015.01.185DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4374736PMC
January 2015

Cross kingdom functional conservation of the core universally conserved threonylcarbamoyladenosine tRNA synthesis enzymes.

Eukaryot Cell 2014 Sep 18;13(9):1222-31. Epub 2014 Jul 18.

University of Florida Genetics Institute, Gainesville, Florida, USA Department of Microbiology and Cell Science, University of Florida, Gainesville, Florida, USA

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http://dx.doi.org/10.1128/EC.00147-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4187629PMC
September 2014

Plant, animal, and fungal micronutrient queuosine is salvaged by members of the DUF2419 protein family.

ACS Chem Biol 2014 Aug 17;9(8):1812-25. Epub 2014 Jun 17.

Department of Microbiology and Cell Science, University of Florida , Gainesville, Florida 32611, United States.

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http://pubs.acs.org/doi/10.1021/cb500278k
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http://dx.doi.org/10.1021/cb500278kDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4136680PMC
August 2014

Discovery of the β-barrel-type RNA methyltransferase responsible for N6-methylation of N6-threonylcarbamoyladenosine in tRNAs.

Nucleic Acids Res 2014 Aug 24;42(14):9350-65. Epub 2014 Jul 24.

Department of Chemistry and Biotechnology, Graduate School of Engineering, University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan

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http://dx.doi.org/10.1093/nar/gku618DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4132733PMC
August 2014

Promiscuous and adaptable enzymes fill "holes" in the tetrahydrofolate pathway in Chlamydia species.

MBio 2014 Jul 8;5(4):e01378-14. Epub 2014 Jul 8.

Department of Microbiology and Immunology, F. Edward Hébert School of Medicine, Uniformed Services University, Bethesda, Maryland, USA

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http://dx.doi.org/10.1128/mBio.01378-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4161248PMC
July 2014

Integrative data-mining tools to link gene and function.

Methods Mol Biol 2014 ;1101:43-66

Department of Microbiology and Cell Science, University of Florida, Gainesville, FL, USA.

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http://dx.doi.org/10.1007/978-1-62703-721-1_4DOI Listing
June 2014

Variations in metabolic pathways create challenges for automated metabolic reconstructions: Examples from the tetrahydrofolate synthesis pathway.

Comput Struct Biotechnol J 2014 Jun 11;10(16):41-50. Epub 2014 Jun 11.

Department of Microbiology and Cell Science and Genetics Institute, University of Florida, Gainesville, FL, United States.

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http://dx.doi.org/10.1016/j.csbj.2014.05.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4151868PMC
June 2014

Predicting the minimal translation apparatus: lessons from the reductive evolution of mollicutes.

PLoS Genet 2014 May 8;10(5):e1004363. Epub 2014 May 8.

INRA, UMR 1332 de Biologie du Fruit et Pathologie, Villenave d'Ornon, France; Univ. Bordeaux, UMR 1332 de Biologie du Fruit et Pathologie, Villenave d'Ornon, France.

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http://dx.doi.org/10.1371/journal.pgen.1004363DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4014445PMC
May 2014

Identification of the thiamin salvage enzyme thiazole kinase in Arabidopsis and maize.

Phytochemistry 2013 Oct 28;94:68-73. Epub 2013 Jun 28.

Department of Biochemistry and Molecular Biology, University of Nevada, Reno, NV 89557, USA.

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http://dx.doi.org/10.1016/j.phytochem.2013.05.017DOI Listing
October 2013

Biosynthesis and function of posttranscriptional modifications of transfer RNAs.

Annu Rev Genet 2012 16;46:69-95. Epub 2012 Aug 16.

Department of Microbiology, University of Florida, Gainesville, Florida 32611-0700, USA.

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http://dx.doi.org/10.1146/annurev-genet-110711-155641DOI Listing
April 2013

A genetic investigation of the KEOPS complex in halophilic Archaea.

PLoS One 2012 23;7(8):e43013. Epub 2012 Aug 23.

Department of Molecular Microbiology and Biotechnology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0043013PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3426518PMC
January 2013

Comparative genomics guided discovery of two missing archaeal enzyme families involved in the biosynthesis of the pterin moiety of tetrahydromethanopterin and tetrahydrofolate.

ACS Chem Biol 2012 Nov 7;7(11):1807-16. Epub 2012 Sep 7.

Department of Microbiology and Department of Microbiology and Cell Science, University of Florida, P.O. Box 110700, Gainesville, Florida 32611-0700, United States.

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http://dx.doi.org/10.1021/cb300342uDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3500442PMC
November 2012

Plant B vitamin pathways and their compartmentation: a guide for the perplexed.

J Exp Bot 2012 Sep 21;63(15):5379-95. Epub 2012 Aug 21.

Mathematics and Computer Science Division, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, IL 60439 USA.

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http://dx.doi.org/10.1093/jxb/ers208DOI Listing
September 2012

Structural basis of biological nitrile reduction.

J Biol Chem 2012 Aug 11;287(36):30560-70. Epub 2012 Jul 11.

Department of Chemistry, Portland State University, Portland, OR 97207, USA.

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http://dx.doi.org/10.1074/jbc.M112.388538DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3436371PMC
August 2012

YeiR: a metal-binding GTPase from Escherichia coli involved in metal homeostasis.

Metallomics 2012 May 17;4(5):488-97. Epub 2012 Apr 17.

Department of Microbiology & Cell Science, University of Florida, PO Box 110700, Gainesville, FL 32611-0700, USA.

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http://dx.doi.org/10.1039/c2mt20012kDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3574555PMC
May 2012

Biosynthesis of threonylcarbamoyl adenosine (t6A), a universal tRNA nucleoside.

J Biol Chem 2012 Apr 29;287(17):13666-73. Epub 2012 Feb 29.

Department of Chemistry, Portland State University, Portland, Oregon 97207, USA.

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http://dx.doi.org/10.1074/jbc.M112.344028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3340167PMC
April 2012

Functional promiscuity of the COG0720 family.

ACS Chem Biol 2012 Jan 26;7(1):197-209. Epub 2011 Oct 26.

Department of Microbiology and Cell Science, University of Florida, Gainesville, 32611, United States.

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http://dx.doi.org/10.1021/cb200329fDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3262898PMC
January 2012

Decoding in Candidatus Riesia pediculicola, close to a minimal tRNA modification set?

Trends Cell Mol Biol 2012 ;7:11-34

Department of Microbiology and Cell Science, University of Florida, P.O. Box 110700, Gainesville, FL 32611-0700, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3539174PMC
January 2012

Pseudouridine formation in archaeal RNAs: The case of Haloferax volcanii.

RNA 2011 Jul 31;17(7):1367-80. Epub 2011 May 31.

Department of Microbiology & Cell Science, University of Florida, Gainesville, Florida 32611-0700, USA.

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http://rnajournal.cshlp.org/cgi/doi/10.1261/rna.2712811
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http://dx.doi.org/10.1261/rna.2712811DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3138572PMC
July 2011

Biosynthesis and function of tRNA modifications in Archaea.

Curr Opin Microbiol 2011 Jun 4;14(3):335-41. Epub 2011 Apr 4.

Microbiology and Cell Science Department, University of Florida, Gainesville, FL 32611, USA.

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http://dx.doi.org/10.1016/j.mib.2011.03.001DOI Listing
June 2011

Mining high-throughput experimental data to link gene and function.

Trends Biotechnol 2011 Apr;29(4):174-82

Department of Microbiology and Cell Science, University of Florida, Gainesville, FL 32611, USA.

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http://dx.doi.org/10.1016/j.tibtech.2011.01.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3073767PMC
April 2011

A role for the universal Kae1/Qri7/YgjD (COG0533) family in tRNA modification.

EMBO J 2011 Mar 1;30(5):882-93. Epub 2011 Feb 1.

Department of Microbiology and Cell Science, University of Florida, Gainesville, FL, USA.

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http://dx.doi.org/10.1038/emboj.2010.363DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3049207PMC
March 2011

Role of a Zn-independent DksA in Zn homeostasis and stringent response.

Mol Microbiol 2011 Feb 7;79(3):700-15. Epub 2010 Dec 7.

Department of Microbiology and Cell Science, University of Florida, Gainesville, FL 32611, USA.

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http://dx.doi.org/10.1111/j.1365-2958.2010.07475.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3076637PMC
February 2011

Moonlighting glutamate formiminotransferases can functionally replace 5-formyltetrahydrofolate cycloligase.

J Biol Chem 2010 Dec 15;285(53):41557-66. Epub 2010 Oct 15.

Department of Horticultural Sciences, University of Florida, Gainesville, Florida 32611, USA.

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http://dx.doi.org/10.1074/jbc.M110.190504DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3009883PMC
December 2010

A role for tetrahydrofolates in the metabolism of iron-sulfur clusters in all domains of life.

Proc Natl Acad Sci U S A 2010 Jun 20;107(23):10412-7. Epub 2010 May 20.

Horticultural Sciences, Food Science and Human Nutrition, Microbiology and Cell Science Departments, and Department of Biochemistry and Molecular Biology and National High Magnetic Field Laboratory, and McKnight Brain Institute, University of Florida, Gainesville, FL 32611, USA.

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http://dx.doi.org/10.1073/pnas.0911586107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2890791PMC
June 2010

Discovery and characterization of an amidinotransferase involved in the modification of archaeal tRNA.

J Biol Chem 2010 Apr 3;285(17):12706-13. Epub 2010 Feb 3.

Department of Microbiology, University of Florida, Gainesville, Florida 32611-0700, USA.

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http://dx.doi.org/10.1074/jbc.M110.102236DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2857094PMC
April 2010

FolX and FolM are essential for tetrahydromonapterin synthesis in Escherichia coli and Pseudomonas aeruginosa.

J Bacteriol 2010 Jan 6;192(2):475-82. Epub 2009 Nov 6.

University of Florida, Horticultural Sciences Department, Gainesville, FL 32611, USA.

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http://dx.doi.org/10.1128/JB.01198-09DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2805310PMC
January 2010

Deciphering synonymous codons in the three domains of life: co-evolution with specific tRNA modification enzymes.

FEBS Lett 2010 Jan;584(2):252-64

Université Paris-Sud, CNRS, UMR8621, Institut de Génétique et de Microbiologie, Orsay F-91405, France.

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http://dx.doi.org/10.1016/j.febslet.2009.11.052DOI Listing
January 2010

Predicting the pathway involved in post-translational modification of elongation factor P in a subset of bacterial species.

Biol Direct 2010 Jan 13;5. Epub 2010 Jan 13.

Department of Microbiology and Cell Science, University of Florida, Gainesville, FL, USA.

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http://biologydirect.biomedcentral.com/articles/10.1186/1745
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http://dx.doi.org/10.1186/1745-6150-5-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2821294PMC
January 2010

'Unknown' proteins and 'orphan' enzymes: the missing half of the engineering parts list--and how to find it.

Biochem J 2009 Dec 14;425(1):1-11. Epub 2009 Dec 14.

Horticultural Sciences Department, University of Florida, Gainesville, FL 32611, USA.

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http://dx.doi.org/10.1042/BJ20091328DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3022307PMC
December 2009

A fast and accurate algorithm for comparative analysis of metabolic pathways.

J Bioinform Comput Biol 2009 Jun;7(3):389-428

Department of Computer Science and Engineering, University of Florida, Gainesville, FL 32611, USA.

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http://dx.doi.org/10.1142/s0219720009004163DOI Listing
June 2009