Publications by authors named "Valentin Loux"

79Publications

The complete genome sequence of Mycobacterium bovis Mb3601, a SB0120 spoligotype strain representative of a new clonal group.

Infect Genet Evol 2020 Aug 30;82:104309. Epub 2020 Mar 30.

Paris-Est University, French Agency for Food, Environmental and Occupational Health and Safety (Anses), Animal Health Laboratory, National reference Laboratory for Tuberculosis, 94701 Maisons-Alfort cedex, France. Electronic address:

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http://dx.doi.org/10.1016/j.meegid.2020.104309DOI Listing
August 2020

Effect of sodium chloride reduction or partial substitution with potassium chloride on the microbiological, biochemical and sensory characteristics of semi-hard and soft cheeses.

Food Res Int 2019 11 23;125:108643. Epub 2019 Aug 23.

UMR 787 Génie et Microbiologie des Procédés Alimentaires, AgroParisTech, INRA, Université Paris-Saclay, 78850 Thiverval-Grignon, France. Electronic address:

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http://dx.doi.org/10.1016/j.foodres.2019.108643DOI Listing
November 2019

Bioinformatics Tools and Workflow to Select Blood Biomarkers for Early Cancer Diagnosis: An Application to Pancreatic Cancer.

Proteomics 2019 11 10;19(21-22):e1800489. Epub 2019 Oct 10.

University of Grenoble Alpes, INSERM, CEA, IRIG-BGE, U1038, Grenoble, 38000, France.

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http://dx.doi.org/10.1002/pmic.201800489DOI Listing
November 2019

Designing an In Silico Strategy to Select Tissue-Leakage Biomarkers Using the Galaxy Framework.

Methods Mol Biol 2019 ;1959:275-289

Université Grenoble Alpes, CEA, Inserm, BGE U1038, Grenoble, France.

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http://dx.doi.org/10.1007/978-1-4939-9164-8_18DOI Listing
July 2019

Comparative metatranscriptomic analysis of anaerobic digesters treating anionic surfactant contaminated wastewater.

Sci Total Environ 2019 Feb 27;649:482-494. Epub 2018 Aug 27.

Microbial Resources Division, Research Center for Chemistry, Biology and Agriculture (CPQBA), Campinas University - UNICAMP, Campinas, SP CEP 13081-970, Brazil.

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http://dx.doi.org/10.1016/j.scitotenv.2018.08.328DOI Listing
February 2019

Genomic Diversity and Evolution of the Fish Pathogen .

Front Microbiol 2018 7;9:138. Epub 2018 Feb 7.

Unité Mathématiques et Informatique Appliquées du Génome à l'Environnement (MaIAGE), Institut National de la Recherche Agronomique, Université Paris-Saclay, Jouy-en-Josas, France.

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http://dx.doi.org/10.3389/fmicb.2018.00138DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5808330PMC
February 2018

Transcriptomic response of Debaryomyces hansenii during mixed culture in a liquid model cheese medium with Yarrowia lipolytica.

Int J Food Microbiol 2018 Jan 24;264:53-62. Epub 2017 Oct 24.

UMR 1319 MICALIS, INRA, AgroParisTech, CBAI, BP01, 78850 Thiverval Grignon, France.

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http://dx.doi.org/10.1016/j.ijfoodmicro.2017.10.026DOI Listing
January 2018

Whole-Genome Sequencing of Seven Strains of Staphylococcus lugdunensis Allows Identification of Mobile Genetic Elements.

Genome Biol Evol 2017 05;9(5)

Université de Strasbourg, CHRU de Strasbourg, VBP EA7290, Fédération de Médecine Translationnelle de Strasbourg (FMTS), Institut de bactériologie, Hôpitaux Universitaires de Strasbourg, France.

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http://dx.doi.org/10.1093/gbe/evx077DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5425232PMC
May 2017

Complete Genome Sequence of Lactococcus lactis subsp. lactis A12, a Strain Isolated from Wheat Sourdough.

Genome Announc 2016 Sep 15;4(5). Epub 2016 Sep 15.

Université de Toulouse, Université Paul Sabatier, Toulouse, France CNRS, UMR 5100, Toulouse, France Université de Toulouse, INSA, UPS, INP, Toulouse, France INRA, UMR792, Ingénierie des Systèmes Biologiques et des Procédés, Toulouse, France CNRS, UMR5504, Toulouse, France

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http://dx.doi.org/10.1128/genomeA.00692-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5026425PMC
September 2016

Draft Genome Sequence of Corynebacterium variabile Mu292, Isolated from Munster, a French Smear-Ripened Cheese.

Genome Announc 2016 Jul 21;4(4). Epub 2016 Jul 21.

UMR Génie et Microbiologie des Procédés Alimentaires, GMPA, AgroParisTech, INRA, Université Paris-Saclay, Thiverval-Grignon, France

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http://dx.doi.org/10.1128/genomeA.00669-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4956445PMC
July 2016

Permanent draft genome sequence of the probiotic strain Propionibacterium freudenreichii CIRM-BIA 129 (ITG P20).

Stand Genomic Sci 2016 14;11. Epub 2016 Jan 14.

INRA, UMR 1253, Science et Technologie du Lait et de l'Oeuf, 35000 Rennes, France ; AGROCAMPUS OUEST, UMR1253, UMR Science et Technologie du Lait et de l'Oeuf, 35000 Rennes, France.

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http://dx.doi.org/10.1186/s40793-015-0120-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4714504PMC
January 2016

New Insights into the Classification and Integration Specificity of Streptococcus Integrative Conjugative Elements through Extensive Genome Exploration.

Front Microbiol 2015 6;6:1483. Epub 2016 Jan 6.

DynAMic, Faculté des Sciences et Technologies, Université de Lorraine, UMR 1128Vandœuvre-lès-Nancy, France; DynAMic, Institut National de la Recherche Agronomique, UMR 1128Vandœuvre-lès-Nancy, France.

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http://dx.doi.org/10.3389/fmicb.2015.01483DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4701971PMC
January 2016

Data from an integrative approach decipher the surface proteome of Propionibacterium freudenreichii.

Data Brief 2014 Dec 21;1:46-50. Epub 2014 Sep 21.

INRA, UMR1253 STLO, Science et Technologie du Lait et de l׳Œuf, F-35042 Rennes, France ; GROCAMPUS OUEST, UMR1253 STLO, F-35042 Rennes, France.

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http://dx.doi.org/10.1016/j.dib.2014.08.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4459863PMC
December 2014

Inventory of the GH70 enzymes encoded by Leuconostoc citreum NRRL B-1299 - identification of three novel α-transglucosylases.

FEBS J 2015 Jun 8;282(11):2115-30. Epub 2015 Apr 8.

Université de Toulouse, Institut National des Sciences Appliquées (INSA), Université Paul Sabatier (UPS), Institut National Polytechnique (INP), Laboratoire d'Ingénierie des Systémes biologiques et des Procédés (LISBP), Toulouse, France.

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http://doi.wiley.com/10.1111/febs.13261
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http://dx.doi.org/10.1111/febs.13261DOI Listing
June 2015

Insyght: navigating amongst abundant homologues, syntenies and gene functional annotations in bacteria, it's that symbol!

Nucleic Acids Res 2014 Dec 23;42(21). Epub 2014 Sep 23.

INRA, UR 1077 Mathématique Informatique et Génome, 78352 Jouy-en-Josas, France.

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http://dx.doi.org/10.1093/nar/gku867DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4245967PMC
December 2014

Technical challenges in metatranscriptomic studies applied to the bacterial communities of freshwater ecosystems.

Genetica 2015 Apr 13;143(2):157-67. Epub 2014 Sep 13.

iEES Paris, UMR 7618 UPMC-CNRS-INRA-IRD-Paris 7-UPEC, 4 place Jussieu, 75005, Paris, France.

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http://dx.doi.org/10.1007/s10709-014-9783-4DOI Listing
April 2015

Surface proteins of Propionibacterium freudenreichii are involved in its anti-inflammatory properties.

J Proteomics 2015 Jan 20;113:447-61. Epub 2014 Aug 20.

INRA, UMR1253 STLO, Science et Technologie du Lait et de l'Œuf, F-35042 Rennes, France; AGROCAMPUS OUEST, UMR1253 STLO, F-35042 Rennes, France. Electronic address:

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http://dx.doi.org/10.1016/j.jprot.2014.07.018DOI Listing
January 2015

Draft Genome Sequence of Lactobacillus hominis Strain CRBIP 24.179T, Isolated from Human Intestine.

Genome Announc 2013 Aug 22;1(4). Epub 2013 Aug 22.

Institut Pasteur, Centre de Ressources Biologiques de l'Institut Pasteur, Département de Microbiologie, Paris, France.

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http://dx.doi.org/10.1128/genomeA.00662-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3751617PMC
August 2013

Draft Genome Sequence of Lactobacillus pasteurii CRBIP 24.76T.

Genome Announc 2013 Aug 22;1(4). Epub 2013 Aug 22.

Institut Pasteur, Centre de Ressources Biologiques de l'Institut Pasteur, Département de Microbiologie, Paris, France.

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http://dx.doi.org/10.1128/genomeA.00660-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3751616PMC
August 2013

Draft genome sequence of Lactobacillus gigeriorum CRBIP 24.85T, isolated from a chicken crop.

J Bacteriol 2012 Nov;194(21):5973

Département de Microbiologie, Institut Pasteur, Centre de Ressources Biologiques de l'Institut Pasteur, Paris, France.

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http://dx.doi.org/10.1128/JB.01427-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3486101PMC
November 2012

Complete genome sequence of Flavobacterium indicum GPSTA100-9T, isolated from warm spring water.

J Bacteriol 2012 Jun;194(11):3024-5

Unité de Virologie et Immunologie Moléculaires, INRA, Domaine de Vilvert, Jouy-en-Josas, France.

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http://dx.doi.org/10.1128/JB.00420-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3370609PMC
June 2012

Mapping reads on a genomic sequence: an algorithmic overview and a practical comparative analysis.

J Comput Biol 2012 Jun 16;19(6):796-813. Epub 2012 Apr 16.

INRA, UR1077 Unité Mathématique Informatique et Génome, Jouy-en-Josas, France.

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http://dx.doi.org/10.1089/cmb.2012.0022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3375638PMC
June 2012

Genome sequence of Weissella confusa LBAE C39-2, isolated from a wheat sourdough.

J Bacteriol 2012 Mar;194(6):1608-9

Université de Toulouse, Laboratoire de Biotechnologies Agroalimentaire et Environnementale, EA 4565, Institut Universitaire de Technologie, Auch, France.

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http://dx.doi.org/10.1128/JB.06788-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3294846PMC
March 2012

Complete genome sequence of the fish pathogen Flavobacterium branchiophilum.

Appl Environ Microbiol 2011 Nov 16;77(21):7656-62. Epub 2011 Sep 16.

Institut Pasteur, Microbial Evolutionary Genomics, Département Génomes et Génétique, F-75015 Paris, France.

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http://dx.doi.org/10.1128/AEM.05625-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3209149PMC
November 2011

Complete genome sequence of the commensal Streptococcus salivarius strain JIM8777.

J Bacteriol 2011 Sep 8;193(18):5024-5. Epub 2011 Jul 8.

Institut Micalis (Microbiologie de l'Alimentation au service de la Santé), INRA (UMR1319) et AgroParisTech, Domaine de Vilvert, F-78350 Jouy-en-Josas cedex, France.

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http://dx.doi.org/10.1128/JB.05390-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3165664PMC
September 2011

CompaGB: An open framework for genome browsers comparison.

BMC Res Notes 2011 May 4;4:133. Epub 2011 May 4.

INRA UR1077, Unité Mathématique, Informatique & Génome, Jouy-en-Josas, France.

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http://dx.doi.org/10.1186/1756-0500-4-133DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3096945PMC
May 2011

Identification of brevibacteriaceae by multilocus sequence typing and comparative genomic hybridization analyses.

Appl Environ Microbiol 2009 Oct 31;75(19):6406-9. Epub 2009 Jul 31.

INRA-AgroParisTech, UMR 782 Génie et Microbiologie des Procédés Alimentaires, Centre de Biotechnologies Agro-Industrielles, 78850 Thiverval-Grignon, France.

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http://dx.doi.org/10.1128/AEM.00224-09DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2753076PMC
October 2009

The complete genome sequence of the meat-borne lactic acid bacterium Lactobacillus sakei 23K.

Nat Biotechnol 2005 Dec 6;23(12):1527-33. Epub 2005 Nov 6.

Unité Flore Lactique et Environnement Carné, INRA Domaine de Vilvert, 78350 Jouy-en-Josas, France.

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http://dx.doi.org/10.1038/nbt1160DOI Listing
December 2005