Publications by authors named "Vaclav Klika"

23Publications

Turing Patterning in Stratified Domains.

Bull Math Biol 2020 Oct 15;82(10):136. Epub 2020 Oct 15.

Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Andrew Wiles Building, Radcliffe Observatory Quarter, Woodstock Road, Oxford, OX2 6GG, UK.

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http://dx.doi.org/10.1007/s11538-020-00809-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7561598PMC
October 2020

From one pattern into another: analysis of Turing patterns in heterogeneous domains via WKBJ.

J R Soc Interface 2020 01 15;17(162):20190621. Epub 2020 Jan 15.

Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Andrew Wiles Building, Radcliffe Observatory Quarter, Woodstock Road, Oxford OX2 6GG, UK.

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http://dx.doi.org/10.1098/rsif.2019.0621DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7014807PMC
January 2020

Pattern formation in reaction-diffusion systems with piecewise kinetic modulation: An example study of heterogeneous kinetics.

Phys Rev E 2019 Oct;100(4-1):042220

Department of Mathematics, FNSPE, Czech Technical University in Prague, Prague, Czech Republic.

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http://dx.doi.org/10.1103/PhysRevE.100.042220DOI Listing
October 2019

The combined impact of tissue heterogeneity and fixed charge for models of cartilage: the one-dimensional biphasic swelling model revisited.

Biomech Model Mechanobiol 2019 Aug 6;18(4):953-968. Epub 2019 Feb 6.

Mathematical Institute, University of Oxford, Oxford, UK.

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http://dx.doi.org/10.1007/s10237-019-01123-7DOI Listing
August 2019

Beyond Onsager-Casimir Relations: Shared Dependence of Phenomenological Coefficients on State Variables.

J Phys Chem Lett 2018 Dec 5;9(24):7021-7025. Epub 2018 Dec 5.

Mathematical Institute, University of Oxford , Andrew Wiles Building, Radcliffe Observatory Quarter, Woodstock Road , Oxford OX2 6GG , United Kingdom.

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http://dx.doi.org/10.1021/acs.jpclett.8b03281DOI Listing
December 2018

Heterogeneity induces spatiotemporal oscillations in reaction-diffusion systems.

Phys Rev E 2018 May;97(5-1):052206

Mathematical Institute, University of Oxford, Andrew Wiles Building, Radcliffe Observatory Quarter, Woodstock Road, Oxford, OX2 6GG, United Kingdom.

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http://dx.doi.org/10.1103/PhysRevE.97.052206DOI Listing
May 2018

Significance of non-normality-induced patterns: Transient growth versus asymptotic stability.

Authors:
Václav Klika

Chaos 2017 Jul;27(7):073120

Department of Mathematics, FNSPE, Czech Technical University in Prague, Prague, Czech Republic.

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http://dx.doi.org/10.1063/1.4985256DOI Listing
July 2017

Hierarchical patterning modes orchestrate hair follicle morphogenesis.

PLoS Biol 2017 Jul 11;15(7):e2002117. Epub 2017 Jul 11.

The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh, United Kingdom.

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http://dx.doi.org/10.1371/journal.pbio.2002117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5507405PMC
July 2017

History dependence and the continuum approximation breakdown: the impact of domain growth on Turing's instability.

Proc Math Phys Eng Sci 2017 Mar 15;473(2199):20160744. Epub 2017 Mar 15.

Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Oxford, UK.

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http://dx.doi.org/10.1098/rspa.2016.0744DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5378238PMC
March 2017

Functional constraints on phenomenological coefficients.

Phys Rev E 2017 Feb 21;95(2-1):022125. Epub 2017 Feb 21.

Chemical and Biological Engineering, Princeton University, Princeton, New Jersey 08544, USA.

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http://dx.doi.org/10.1103/PhysRevE.95.022125DOI Listing
February 2017

An overview of multiphase cartilage mechanical modelling and its role in understanding function and pathology.

J Mech Behav Biomed Mater 2016 09 11;62:139-157. Epub 2016 May 11.

Nuffield Department of Orthopaedics, Rheumatology and Musculoskeletal Sciences, University of Oxford, Oxford, UK. Electronic address:

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http://dx.doi.org/10.1016/j.jmbbm.2016.04.032DOI Listing
September 2016

Reductions and extensions in mesoscopic dynamics.

Phys Rev E Stat Nonlin Soft Matter Phys 2015 Sep 8;92(3):032111. Epub 2015 Sep 8.

École Polytechnique de Montréal, C.P. 6079 succ. Centre-ville, Montréal, H3C 3A7 Québec, Canada; Mathematical Institute, Faculty of Mathematics and Physics, Charles University in Prague, Sokolovská 83, 186 75 Prague, Czech Republic; and New Technologies-Research Centre, University of West Bohemia, Univerzitní 8, 306 14 Pilsen, Czech Republic.

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http://dx.doi.org/10.1103/PhysRevE.92.032111DOI Listing
September 2015

Time reversal in nonequilibrium thermodynamics.

Phys Rev E Stat Nonlin Soft Matter Phys 2014 Dec 19;90(6):062131. Epub 2014 Dec 19.

École Polytechnique de Montréal, C.P.6079 suc. Centre-ville, Montréal, H3C 3A7 Québec, Canada.

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http://dx.doi.org/10.1103/PhysRevE.90.062131DOI Listing
December 2014

Investigating stress shielding spanned by biomimetic polymer-composite vs. metallic hip stem: A computational study using mechano-biochemical model.

J Mech Behav Biomed Mater 2015 Jan 8;41:56-67. Epub 2014 Oct 8.

Department of Mechanical and Industrial Engineering, Ryerson University, Toronto, ON, Canada. Electronic address:

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http://dx.doi.org/10.1016/j.jmbbm.2014.09.019DOI Listing
January 2015

A stochastic model for early placental development.

J R Soc Interface 2014 Aug;11(97):20140149

Institute of Human Development, Maternal and Fetal Health Research Centre, University of Manchester, Manchester, UK Maternal and Fetal Health Research Centre, St Mary's Hospital, Central Manchester University Hospitals NHS Foundation Trust, Manchester Academic Health Science Centre, Manchester, UK.

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http://dx.doi.org/10.1098/rsif.2014.0149DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4208356PMC
August 2014

Mechano-chemical coupling in Belousov-Zhabotinskii reactions.

J Chem Phys 2014 Mar;140(12):124110

Ecole Polytechnique de Montreal, C.P. 6079 suc. Centre-ville, Montreal, H3C 3A7 Quebec, Canada.

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http://dx.doi.org/10.1063/1.4869195DOI Listing
March 2014

A coupled mechano-biochemical model for bone adaptation.

J Math Biol 2014 Dec 12;69(6-7):1383-429. Epub 2013 Nov 12.

Institute of Thermomechanics, Academy of Sciences of the Czech Republic, Dolejskova 5, 182 00 , Prague 8, Czech Republic,

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http://dx.doi.org/10.1007/s00285-013-0736-9DOI Listing
December 2014

Coupling between chemical kinetics and mechanics that is both nonlinear and compatible with thermodynamics.

Phys Rev E Stat Nonlin Soft Matter Phys 2013 Jan 28;87(1):012141. Epub 2013 Jan 28.

Department of Mathematics, FNSPE, Czech Technical University, Trojanova 13, Prague 2, 120 00, Czech Republic.

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http://dx.doi.org/10.1103/PhysRevE.87.012141DOI Listing
January 2013

The influence of receptor-mediated interactions on reaction-diffusion mechanisms of cellular self-organisation.

Bull Math Biol 2012 Apr 10;74(4):935-57. Epub 2011 Nov 10.

Department of Mathematics, FNSPE, Czech Technical University in Prague, Prague, Czech Republic.

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http://dx.doi.org/10.1007/s11538-011-9699-4DOI Listing
April 2012

Comparison of the effects of possible mechanical stimuli on the rate of biochemical reactions.

Authors:
Václav Klika

J Phys Chem B 2010 Aug;114(32):10567-72

Department of Mathematics, FNSPE, Czech Technical University in Prague, Trojanova 13, 120 00 Prague, Czech Republic.

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http://dx.doi.org/10.1021/jp1000072DOI Listing
August 2010

New predictive model for monitoring bone remodeling.

J Biomed Mater Res A 2010 Oct;95(1):9-24

Department of Mechanical and Industrial Engineering, Ryerson University, Toronto, Canada M5B 2K3.

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http://dx.doi.org/10.1002/jbm.a.32679DOI Listing
October 2010

Coupling effect between mechanical loading and chemical reactions.

J Phys Chem B 2009 Nov;113(44):14689-97

Institute of Thermomechanics, v.v.i., Academy of Sciences of Czech Republic, Dolejskova 5, 182 00 Prague, Czech Republic.

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http://dx.doi.org/10.1021/jp903054yDOI Listing
November 2009