Ulrike Korf

Ulrike Korf

UNVERIFIED PROFILE

Are you Ulrike Korf?   Register this Author

Register author
Ulrike Korf

Ulrike Korf

Publications by authors named "Ulrike Korf"

Are you Ulrike Korf?   Register this Author

52Publications

950Reads

20Profile Views

Reconstruction of Different Modes of WNT Dependent Protein Networks from Time Series Protein Quantification.

Stud Health Technol Inform 2019 Sep;267:175-180

University Medical Center Göttingen, Hematology & Medical Oncology, 37099 Göttingen.

View Article

Download full-text PDF

Source
http://www.medra.org/servlet/aliasResolver?alias=iospressISB
Publisher Site
http://dx.doi.org/10.3233/SHTI190823DOI Listing
September 2019

Functional Proteomics of Breast Cancer Metabolism Identifies GLUL as Responder during Hypoxic Adaptation.

J Proteome Res 2019 Mar 18;18(3):1352-1362. Epub 2019 Jan 18.

Division of Molecular Genome Analysis , German Cancer Research Center (DKFZ) , Im Neuenheimer Feld 580 , 69120 Heidelberg , Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/acs.jproteome.8b00944DOI Listing
March 2019

Coordinated Pulses of mRNA and of Protein Translation or Degradation Produce EGF-Induced Protein Bursts.

Cell Rep 2017 03;18(13):3129-3142

Department of Physics of Complex Systems, Weizmann Institute of Science, Rehovot 7610001, Israel. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.celrep.2017.03.014DOI Listing
March 2017

Dynamic Bayesian Network Modeling of the Interplay between EGFR and Hedgehog Signaling.

PLoS One 2015 16;10(11):e0142646. Epub 2015 Nov 16.

Division of Molecular Genome Analysis, German Cancer Research Center (DKFZ), Heidelberg, Germany.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0142646PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4646463PMC
June 2016

Reconstruction of Protein Networks Using Reverse-Phase Protein Array Data.

Methods Mol Biol 2016 ;1362:227-46

Department of Medical Statistics, University Medical Center Göttingen, Göttingen, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/978-1-4939-3106-4_15DOI Listing
May 2016

Local variations of HER2 dimerization in breast cancer cells discovered by correlative fluorescence and liquid electron microscopy.

Sci Adv 2015 Jul 17;1(6):e1500165. Epub 2015 Jul 17.

INM-Leibniz Institute for New Materials, Campus D2 2, 66123 Saarbrücken, Germany. ; Department of Physics, University of Saarland, Campus A5 1, 66123 Saarbrücken, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1126/sciadv.1500165DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4646781PMC
July 2015

RPPanalyzer toolbox: an improved R package for analysis of reverse phase protein array data.

Biotechniques 2014 1;57(3):125-35. Epub 2014 Sep 1.

Department of Medical Statistics, University Medical Center Göttingen, Göttingen, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.2144/000114205DOI Listing
May 2015

Subtyping of breast cancer using reverse phase protein arrays.

Expert Rev Proteomics 2014 Dec;11(6):757-70

Division of Molecular Genome Analysis, German Cancer Research Center (DKFZ) Im Neuenheimer Feld 580 69120 Heidelberg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1586/14789450.2014.971113DOI Listing
December 2014

Activation of AMP-activated protein kinase sensitizes lung cancer cells and H1299 xenografts to erlotinib.

Lung Cancer 2014 Nov 10;86(2):151-7. Epub 2014 Sep 10.

Unit Cancer Genome Research, German Cancer Research Center and National Center for Tumor Diseases, Heidelberg, Germany; Translational Lung Research Center Heidelberg (TLRC-H), Member of the German Center for Lung Research, Heidelberg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.lungcan.2014.09.001DOI Listing
November 2014

Boolean ErbB network reconstructions and perturbation simulations reveal individual drug response in different breast cancer cell lines.

BMC Syst Biol 2014 Jun 25;8:75. Epub 2014 Jun 25.

Statistical Bioinformatics, Department of Medical Statistics, University Medical Center Göttingen, Humboldtallee 32, 37073 Göttingen, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1752-0509-8-75DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4087127PMC
June 2014

Evaluation of reverse phase protein array (RPPA)-based pathway-activation profiling in 84 non-small cell lung cancer (NSCLC) cell lines as platform for cancer proteomics and biomarker discovery.

Biochim Biophys Acta 2014 May 19;1844(5):950-9. Epub 2013 Dec 19.

Division of Molecular Genome Analysis, German Cancer Research Center, Im Neuenheimer Feld 580, 69120 Heidelberg, Germany. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.bbapap.2013.11.017DOI Listing
May 2014

Peroxiredoxins 3 and 4 are overexpressed in prostate cancer tissue and affect the proliferation of prostate cancer cells in vitro.

J Proteome Res 2012 Apr 28;11(4):2452-66. Epub 2012 Mar 28.

Department of Oncology, Haematology and Bone marrow transplantation, section Pneumology, Hubertus Wald-Tumour Zentrum, University Hospital Eppendorf, Hamburg, Germany.

View Article

Download full-text PDF

Source
https://pubs.acs.org/doi/10.1021/pr201172n
Publisher Site
http://dx.doi.org/10.1021/pr201172nDOI Listing
April 2012

Utilization of RNAi to validate antibodies for reverse phase protein arrays.

Methods Mol Biol 2011 ;785:45-54

Division of Molecular Genome Analysis, German Cancer Research Center (DKFZ), Heidelberg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/978-1-61779-286-1_4DOI Listing
January 2012

Antibody-mediated signal amplification for reverse phase protein array-based protein quantification.

Methods Mol Biol 2011 ;785:55-64

Division of Molecular Genome Analysis, German Cancer Research Center (DKFZ), Heidelberg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/978-1-61779-286-1_5DOI Listing
January 2012

Quantitative analysis of phosphoproteins using microspot immunoassays.

Methods Mol Biol 2011 ;785:191-201

Division of Molecular Genome Analysis, German Cancer Research Center (DKFZ), Heidelberg, Germany.

View Article

Download full-text PDF

Source
http://link.springer.com/10.1007/978-1-61779-286-1_13
Publisher Site
http://dx.doi.org/10.1007/978-1-61779-286-1_13DOI Listing
January 2012

Microspot immunoassay-based analysis of plasma protein profiles for biomarker discovery strategies.

Methods Mol Biol 2011 ;785:237-45

Division of Molecular Genome Analysis, German Cancer Research Center (DKFZ), Heidelberg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/978-1-61779-286-1_16DOI Listing
January 2012

Inferring signalling networks from longitudinal data using sampling based approaches in the R-package 'ddepn'.

BMC Bioinformatics 2011 Jul 19;12:291. Epub 2011 Jul 19.

German Cancer Research Center (DKFZ), Division of Molecular Genome Analysis, Im Neuenheimer Feld 280, 69120 Heidelberg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-12-291DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3146886PMC
July 2011

RNAi-based validation of antibodies for reverse phase protein arrays.

Proteome Sci 2010 Dec 23;8:69. Epub 2010 Dec 23.

German Cancer Research Center, Division of Molecular Genome Analysis, Heidelberg, Im Neuenheimer Feld 580, 69120 Heidelberg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1477-5956-8-69DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3022873PMC
December 2010

QuantProReloaded: quantitative analysis of microspot immunoassays.

Bioinformatics 2010 Oct 12;26(19):2480-1. Epub 2010 Aug 12.

Division of Molecular Genome Analysis, German Cancer Research Center, Heidelberg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btq443DOI Listing
October 2010

RPPanalyzer: Analysis of reverse-phase protein array data.

Bioinformatics 2010 Sep 15;26(17):2202-3. Epub 2010 Jul 15.

Department of Molecular Genome Analysis, German Cancer Research Center Heidelberg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btq347DOI Listing
September 2010

Dynamic deterministic effects propagation networks: learning signalling pathways from longitudinal protein array data.

Bioinformatics 2010 Sep;26(18):i596-602

Department of Molecular Genome Analysis, German Cancer Research Center, Heidelberg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btq385DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2935402PMC
September 2010

Reverse-phase protein arrays for application-orientated cancer research.

Proteomics Clin Appl 2009 Oct 4;3(10):1140-50. Epub 2009 Aug 4.

Division of Molecular Genome Analysis, German Cancer Research Center, Heidelberg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/prca.200780035DOI Listing
October 2009

Antibody microarrays as an experimental platform for the analysis of signal transduction networks.

Adv Biochem Eng Biotechnol 2008 ;110:153-75

Division of Molecular Genome Analysis, B050, Deutsches Krebsforschungszentrum, Im Neuenheimer Feld 580, 69120, Heidelberg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/10_2008_101DOI Listing
October 2008

Modeling breast cell cycle regulation--overcoming drug resistance.

Conf Proc IEEE Eng Med Biol Soc 2006 ;1:40-3

Div. of Molecular Genome Analysis, German Cancer Research Center, Heidelberg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1109/IEMBS.2006.259761DOI Listing
March 2008

Infrared-based protein detection arrays for quantitative proteomics.

Expert Opin Drug Discov 2008 Feb;3(2):273-83

German Cancer Research Center (DKFZ), Department of Molecular Genome Analysis/B050, Im Neuenheimer Feld 580, 69120 Heidelberg, Germany +49 6221 424765 ; +49 6221 423454 ;

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1517/17460441.3.2.273DOI Listing
February 2008

Human Proteinpedia enables sharing of human protein data.

Authors:
Suresh Mathivanan Mukhtar Ahmed Natalie G Ahn Hainard Alexandre Ramars Amanchy Philip C Andrews Joel S Bader Brian M Balgley Marcus Bantscheff Keiryn L Bennett Erik Björling Blagoy Blagoev Ron Bose Samir K Brahmachari Alma S Burlingame Xosé R Bustelo Gerard Cagney Greg T Cantin Helene L Cardasis Julio E Celis Raghothama Chaerkady Feixia Chu Philip A Cole Catherine E Costello Robert J Cotter David Crockett James P DeLany Angelo M De Marzo Leroi V DeSouza Eric W Deutsch Eric Dransfield Gerard Drewes Arnaud Droit Michael J Dunn Kojo Elenitoba-Johnson Rob M Ewing Jennifer Van Eyk Vitor Faca Jayson Falkner Xiangming Fang Catherine Fenselau Daniel Figeys Pierre Gagné Cecilia Gelfi Kris Gevaert Jeffrey M Gimble Florian Gnad Renu Goel Pavel Gromov Samir M Hanash William S Hancock H C Harsha Gerald Hart Faith Hays Fuchu He Prashantha Hebbar Kenny Helsens Heiko Hermeking Winston Hide Karin Hjernø Denis F Hochstrasser Oliver Hofmann David M Horn Ralph H Hruban Nieves Ibarrola Peter James Ole N Jensen Pia Hønnerup Jensen Peter Jung Kumaran Kandasamy Indu Kheterpal Reiko F Kikuno Ulrike Korf Roman Körner Bernhard Kuster Min-Seok Kwon Hyoung-Joo Lee Young-Jin Lee Michael Lefevre Minna Lehvaslaiho Pierre Lescuyer Fredrik Levander Megan S Lim Christian Löbke Joseph A Loo Matthias Mann Lennart Martens Juan Martinez-Heredia Mark McComb James McRedmond Alexander Mehrle Rajasree Menon Christine A Miller Harald Mischak S Sujatha Mohan Riaz Mohmood Henrik Molina Michael F Moran James D Morgan Robert Moritz Martine Morzel David C Muddiman Anuradha Nalli J Daniel Navarro Thomas A Neubert Osamu Ohara Rafael Oliva Gilbert S Omenn Masaaki Oyama Young-Ki Paik Kyla Pennington Rainer Pepperkok Balamurugan Periaswamy Emanuel F Petricoin Guy G Poirier T S Keshava Prasad Samuel O Purvine B Abdul Rahiman Prasanna Ramachandran Y L Ramachandra Robert H Rice Jens Rick Ragna H Ronnholm Johanna Salonen Jean-Charles Sanchez Thierry Sayd Beerelli Seshi Kripa Shankari Shi Jun Sheng Vivekananda Shetty K Shivakumar Richard J Simpson Ravi Sirdeshmukh K W Michael Siu Jeffrey C Smith Richard D Smith David J States Sumio Sugano Matthew Sullivan Giulio Superti-Furga Maarit Takatalo Visith Thongboonkerd Jonathan C Trinidad Mathias Uhlen Joël Vandekerckhove Julian Vasilescu Timothy D Veenstra José-Manuel Vidal-Taboada Mauno Vihinen Robin Wait Xiaoyue Wang Stefan Wiemann Billy Wu Tao Xu John R Yates Jun Zhong Ming Zhou Yunping Zhu Petra Zurbig Akhilesh Pandey

Nat Biotechnol 2008 Feb;26(2):164-7

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nbt0208-164DOI Listing
February 2008

Combinatorial RNAi for quantitative protein network analysis.

Proc Natl Acad Sci U S A 2007 Apr 9;104(16):6579-84. Epub 2007 Apr 9.

Division of Molecular Genome Analysis, German Cancer Research Center, Im Neuenheimer Feld 580, 69120 Heidelberg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.0606827104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1849961PMC
April 2007

Infrared-based protein detection arrays for quantitative proteomics.

Proteomics 2007 Feb;7(4):558-564

Division of Molecular Genome Analysis, German Cancer Research Center, Heidelberg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/pmic.200600757DOI Listing
February 2007

Systematic comparison of surface coatings for protein microarrays.

Proteomics 2005 Dec;5(18):4705-12

Department of Molecular Genome Analysis, German Cancer Research Center, 69120 Heidelberg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/pmic.200401324DOI Listing
December 2005

Protein microarrays as a discovery tool for studying protein-protein interactions.

Expert Rev Proteomics 2005 Jan;2(1):13-26

Division of Molecular Genome Analysis (B050), DKFZ Heidelberg, Im Neuenheimer Feld 580, 69120 Heidelberg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1586/14789450.2.1.13DOI Listing
January 2005

A novel cell-cell junction system: the cortex adhaerens mosaic of lens fiber cells.

J Cell Sci 2003 Dec;116(Pt 24):4985-95

Division of Cell Biology, German Cancer Research Center, Im Neuenheimer Feld 280, 69120 Heidelberg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1242/jcs.00815DOI Listing
December 2003