Ugis Sarkans

Ugis Sarkans

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Ugis Sarkans

Ugis Sarkans

Publications by authors named "Ugis Sarkans"

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37Publications

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ArrayExpress update - from bulk to single-cell expression data.

Nucleic Acids Res 2019 Jan;47(D1):D711-D715

European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

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https://academic.oup.com/nar/advance-article/doi/10.1093/nar
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http://dx.doi.org/10.1093/nar/gky964DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323929PMC
January 2019

A call for public archives for biological image data.

Nat Methods 2018 11;15(11):849-854

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Cambridge, UK.

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http://dx.doi.org/10.1038/s41592-018-0195-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6884425PMC
November 2018

The BioStudies database-one stop shop for all data supporting a life sciences study.

Nucleic Acids Res 2018 01;46(D1):D1266-D1270

European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Wellcome Genome Campus, Hinxton CB10 1SD, UK.

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http://dx.doi.org/10.1093/nar/gkx965DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753238PMC
January 2018

The Image Data Resource: A Bioimage Data Integration and Publication Platform.

Nat Methods 2017 Aug 19;14(8):775-781. Epub 2017 Jun 19.

Centre for Gene Regulation & Expression & Division of Computational Biology, University of Dundee, Dundee, Scotland, UK.

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http://dx.doi.org/10.1038/nmeth.4326DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5536224PMC
August 2017

Orchestrating differential data access for translational research: a pilot implementation.

BMC Med Inform Decis Mak 2017 03 23;17(1):30. Epub 2017 Mar 23.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK.

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http://dx.doi.org/10.1186/s12911-017-0424-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5363029PMC
March 2017

The BioStudies database.

Mol Syst Biol 2015 Dec 23;11(12):847. Epub 2015 Dec 23.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton Cambridge, UK.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4704487PMC
http://dx.doi.org/10.15252/msb.20156658DOI Listing
December 2015

Cellular phenotype database: a repository for systems microscopy data.

Bioinformatics 2015 Aug 9;31(16):2736-40. Epub 2015 Apr 9.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton CB10 1SD, UK.

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http://dx.doi.org/10.1093/bioinformatics/btv199DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4528631PMC
August 2015

diXa: a data infrastructure for chemical safety assessment.

Bioinformatics 2015 May 12;31(9):1505-7. Epub 2014 Dec 12.

Department of Toxicogenomics, School of Oncology and Developmental Biology (GROW), Maastricht University, 6200 MD Maastricht, The Netherlands, Dana-Farber Cancer Institute, Brigham and Women's Hospital, Harvard Medical School, Boston, 02215, MA, USA, European Molecular Biology Laboratory - European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambs CB10 1SD, UK, Computational and Systems Medicine, Department of Surgery and Cancer, Imperial College London, South Kensington, London SW7 2AZ, UK, Department of Bioinformatics - BiGCaT, Maastricht University, 6200 MD Maastricht, The Netherlands, Genedata AG, CH-4053 Basel, Switzerland, Department of Vertebrate Genomics, Max Planck Institute for Molecular Genetics, 14195 Berlin, Germany, Center of Physiology and Pathophysiology, Institute of Neurophysiology, University of Cologne, Cologne 50931, Germany and European Commission, Joint Research Centre, 21027 Ispra VA, Italy.

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http://dx.doi.org/10.1093/bioinformatics/btu827DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4410652PMC
May 2015

ArrayExpress update--simplifying data submissions.

Nucleic Acids Res 2015 Jan 31;43(Database issue):D1113-6. Epub 2014 Oct 31.

European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK

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http://dx.doi.org/10.1093/nar/gku1057DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383899PMC
January 2015

Biomarkers in autism spectrum disorder: the old and the new.

Psychopharmacology (Berl) 2014 Mar 6;231(6):1201-16. Epub 2013 Oct 6.

MRC Social, Genetic and Developmental Psychiatry Centre, Institute of Psychiatry, King's College London, De Crespigny Park, London, SE5 8AF, UK.

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http://dx.doi.org/10.1007/s00213-013-3290-7DOI Listing
March 2014

Updates to BioSamples database at European Bioinformatics Institute.

Nucleic Acids Res 2014 Jan 21;42(Database issue):D50-2. Epub 2013 Nov 21.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkt1081DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965081PMC
January 2014

graph2tab, a library to convert experimental workflow graphs into tabular formats.

Bioinformatics 2012 Jun 3;28(12):1665-7. Epub 2012 May 3.

European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK.

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http://dx.doi.org/10.1093/bioinformatics/bts258DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3371871PMC
June 2012

The BioSample Database (BioSD) at the European Bioinformatics Institute.

Nucleic Acids Res 2012 Jan 16;40(Database issue):D64-70. Epub 2011 Nov 16.

EMBL-EBI, the European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK.

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http://dx.doi.org/10.1093/nar/gkr937DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245134PMC
January 2012

Data storage and analysis in ArrayExpress and Expression Profiler.

Curr Protoc Bioinformatics 2008 Sep;Chapter 7:Unit 7.13

European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.

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http://dx.doi.org/10.1002/0471250953.bi0713s23DOI Listing
September 2008

Data storage and analysis in ArrayExpress.

Methods Enzymol 2006 ;411:370-86

European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.1016/S0076-6879(06)11020-4DOI Listing
December 2006

Standards for systems biology.

Nat Rev Genet 2006 Aug;7(8):593-605

European Bioinformatics Institute, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton CB10 1SD, UK.

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http://dx.doi.org/10.1038/nrg1922DOI Listing
August 2006

ArrayExpress: a public database of gene expression data at EBI.

C R Biol 2003 Oct-Nov;326(10-11):1075-8

EMBL Outstation-Hinxton, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, United Kingdom.

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http://dx.doi.org/10.1016/j.crvi.2003.09.026DOI Listing
May 2004

Microarray data representation, annotation and storage.

Adv Biochem Eng Biotechnol 2002 ;77:113-39

EMBL Outstation-Hinxton, European Bioinformatics Institute, Cambridge, UK.

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http://dx.doi.org/10.1007/3-540-45713-5_7DOI Listing
October 2002