Publications by authors named "Tsutomu Matsui"

54Publications

Antibody Probes of Module 1 of the 6-Deoxyerythronolide B Synthase Reveal an Extended Conformation During Ketoreduction.

J Am Chem Soc 2020 Sep 18;142(35):14933-14939. Epub 2020 Aug 18.

Chemical Engineering, Stanford University, Stanford, California 94305, United States.

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http://dx.doi.org/10.1021/jacs.0c05133DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7484051PMC
September 2020

Chondrosarcoma with undifferentiated neoplastic cell proliferation around the distal tibiotarsus bone in a wild Hooded Crane (Grus monacha).

J Vet Med Sci 2020 Aug 8;82(8):1093-1096. Epub 2020 Jun 8.

Department of Pathogenetic and Preventive Veterinary Science, Joint Faculty of Veterinary Medicine, Kagoshima University, 1-21-24 Korimoto, Kagoshima 890-0065, Japan.

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http://dx.doi.org/10.1292/jvms.20-0241DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7468071PMC
August 2020

Transition in genetic constellations of H3N8 and H4N6 low-pathogenic avian influenza viruses isolated from an overwintering site in Japan throughout different winter seasons.

Arch Virol 2020 Mar 10;165(3):643-659. Epub 2020 Jan 10.

Laboratory of Animal Hygiene, Joint Faculty of Veterinary Medicine, Kagoshima University, 1-21-24 Korimoto, Kagoshima, 890-0065, Japan.

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http://dx.doi.org/10.1007/s00705-019-04519-zDOI Listing
March 2020

Effect of long anther dehiscence on seed set at high temperatures during flowering in rice (Oryza sativa L.).

Sci Rep 2019 12 30;9(1):20363. Epub 2019 Dec 30.

NARO Institute for Agro-Environmental Sciences, 3-1-3 Kannondai, Tsukuba, Ibaraki, 305-8604, Japan.

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http://dx.doi.org/10.1038/s41598-019-56792-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6937320PMC
December 2019

An ensemble of flexible conformations underlies mechanotransduction by the cadherin-catenin adhesion complex.

Proc Natl Acad Sci U S A 2019 10 7;116(43):21545-21555. Epub 2019 Oct 7.

Department of Chemistry and Biochemistry, City College of New York, City University of New York, New York, NY 10031;

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http://dx.doi.org/10.1073/pnas.1911489116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6815173PMC
October 2019

Identification of a distinct lineage of aviadenovirus from crane feces.

Virus Genes 2019 Dec 23;55(6):815-824. Epub 2019 Sep 23.

Laboratory of RNA Viruses, Department of Virus Research, Institute for Frontier Life and Medical Sciences, Kyoto, Japan.

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http://dx.doi.org/10.1007/s11262-019-01703-wDOI Listing
December 2019

Structure of the full-length Clostridium difficile toxin B.

Nat Struct Mol Biol 2019 08 15;26(8):712-719. Epub 2019 Jul 15.

Department of Physiology and Biophysics, University of California, Irvine, Irvine, CA, USA.

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http://dx.doi.org/10.1038/s41594-019-0268-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6684407PMC
August 2019

Quaternary structure of α-amino-β-carboxymuconate-ϵ-semialdehyde decarboxylase (ACMSD) controls its activity.

J Biol Chem 2019 07 12;294(30):11609-11621. Epub 2019 Jun 12.

Department of Chemistry, University of Texas, San Antonio, Texas 78249

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http://dx.doi.org/10.1074/jbc.RA119.009035DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6663868PMC
July 2019

De Novo Design and Implementation of a Tandem Acyl Carrier Protein Domain in a Type I Modular Polyketide Synthase.

ACS Chem Biol 2018 11 24;13(11):3072-3077. Epub 2018 Oct 24.

Department of Chemistry and Biochemistry , The University of Texas at El Paso , 500 West University Avenue , El Paso , Texas 79968 , United States.

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http://pubs.acs.org/doi/10.1021/acschembio.8b00896
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http://dx.doi.org/10.1021/acschembio.8b00896DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6800213PMC
November 2018

Discovery and Characterization of a Thioesterase-Specific Monoclonal Antibody That Recognizes the 6-Deoxyerythronolide B Synthase.

Biochemistry 2018 10 17;57(43):6201-6208. Epub 2018 Oct 17.

Department of Pharmaceutical Chemistry , University of California San Francisco , San Francisco , California 94158 , United States.

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http://pubs.acs.org/doi/10.1021/acs.biochem.8b00886
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http://dx.doi.org/10.1021/acs.biochem.8b00886DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6424575PMC
October 2018

α-Catenin Structure and Nanoscale Dynamics in Solution and in Complex with F-Actin.

Biophys J 2018 08 11;115(4):642-654. Epub 2018 Jul 11.

Department of Chemistry and Biochemistry, City College of New York, City University of New York, New York, New York. Electronic address:

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http://dx.doi.org/10.1016/j.bpj.2018.07.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6104293PMC
August 2018

Structure-Function Analysis of the Extended Conformation of a Polyketide Synthase Module.

J Am Chem Soc 2018 05 18;140(21):6518-6521. Epub 2018 May 18.

Department of Pharmaceutical Chemistry , University of California San Francisco , San Francisco , California 94158 , United States.

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http://pubs.acs.org/doi/10.1021/jacs.8b02100
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http://dx.doi.org/10.1021/jacs.8b02100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6484869PMC
May 2018

Dynamic intramolecular regulation of the histone chaperone nucleoplasmin controls histone binding and release.

Nat Commun 2017 12 20;8(1):2215. Epub 2017 Dec 20.

Department of Biochemistry, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, NY, 10461, USA.

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http://dx.doi.org/10.1038/s41467-017-02308-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5738438PMC
December 2017

iTRAQ-Based Quantitative Proteomics Analysis on Rice Anther Responding to High Temperature.

Int J Mol Sci 2017 Aug 23;18(9). Epub 2017 Aug 23.

Key Laboratory of Plant Germplasm Enhancement and Speciality Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China.

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http://dx.doi.org/10.3390/ijms18091811DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5618475PMC
August 2017

Structural features of NS3 of Dengue virus serotypes 2 and 4 in solution and insight into RNA binding and the inhibitory role of quercetin.

Acta Crystallogr D Struct Biol 2017 May 19;73(Pt 5):402-419. Epub 2017 Apr 19.

School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore 637551, Singapore.

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http://dx.doi.org/10.1107/S2059798317003849DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5417341PMC
May 2017

Controllable Activation of Nanoscale Dynamics in a Disordered Protein Alters Binding Kinetics.

J Mol Biol 2017 04 8;429(7):987-998. Epub 2017 Mar 8.

Department of Chemistry and Biochemistry, City College of New York, CUNY, New York, NY 10031, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jmb.2017.03.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5399307PMC
April 2017

High Temperature Induced Glume Closure Resulted in Lower Fertility in Hybrid Rice Seed Production.

Front Plant Sci 2016 5;7:1960. Epub 2017 Jan 5.

Agricultural College, Yangtze UniversityJingzhou, China; Hubei Collaborative Innovation Center for Grain IndustryJingzhou, China.

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http://journal.frontiersin.org/article/10.3389/fpls.2016.019
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http://dx.doi.org/10.3389/fpls.2016.01960DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5214948PMC
January 2017

Solution structure of an "open" E. coli Pol III clamp loader sliding clamp complex.

J Struct Biol 2016 06 8;194(3):272-81. Epub 2016 Mar 8.

Biochemistry and Molecular Biology, University of Florida, PO Box 100245, Gainesville, FL 32610, United States. Electronic address:

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http://dx.doi.org/10.1016/j.jsb.2016.03.003DOI Listing
June 2016

Selective Binding of AIRAPL Tandem UIMs to Lys48-Linked Tri-Ubiquitin Chains.

Structure 2016 Mar 11;24(3):412-22. Epub 2016 Feb 11.

Structural Biology Research Center, Photon Factory, Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki 305-0801, Japan; Department of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305, USA; Structural Molecular Biology, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA; Photon Science, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA. Electronic address:

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http://dx.doi.org/10.1016/j.str.2015.12.017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4775417PMC
March 2016

The accurate assessment of small-angle X-ray scattering data.

Acta Crystallogr D Biol Crystallogr 2015 Jan 1;71(Pt 1):45-56. Epub 2015 Jan 1.

Hauptman-Woodward Medical Research Institute, 700 Ellicott Street, Buffalo, NY 14203, USA.

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http://dx.doi.org/10.1107/S1399004714010876DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4304685PMC
January 2015

An encapsidated viral protein and its role in RNA packaging by a non-enveloped animal RNA virus.

Virology 2015 Feb 9;476:323-333. Epub 2015 Jan 9.

Department of Biochemistry and Microbiology, Rhodes University, PO Box 94, Grahamstown 6140, South Africa. Electronic address:

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http://dx.doi.org/10.1016/j.virol.2014.12.026DOI Listing
February 2015

Internal motions prime cIAP1 for rapid activation.

Nat Struct Mol Biol 2014 Dec 10;21(12):1068-74. Epub 2014 Nov 10.

Department of Early Discovery Biochemistry, Genentech, South San Francisco, California, USA.

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http://dx.doi.org/10.1038/nsmb.2916DOI Listing
December 2014

Structural basis of the pH-dependent assembly of a botulinum neurotoxin complex.

J Mol Biol 2014 Nov 18;426(22):3773-3782. Epub 2014 Sep 18.

Department of Physiology and Biophysics, University of California, Irvine, CA 92697, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jmb.2014.09.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4252799PMC
November 2014

Integrative structure-function mapping of the nucleoporin Nup133 suggests a conserved mechanism for membrane anchoring of the nuclear pore complex.

Mol Cell Proteomics 2014 Nov 19;13(11):2911-26. Epub 2014 Aug 19.

From the ‡Department of Bioengineering and Therapeutic Sciences, Department of Pharmaceutical Chemistry, California Institute for Quantitative Biosciences, Byers Hall, 1700 4th Street, Suite 503B, University of California San Francisco, San Francisco, California 94158;

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http://dx.doi.org/10.1074/mcp.M114.040915DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4223481PMC
November 2014

CD4-induced activation in a soluble HIV-1 Env trimer.

Structure 2014 Jul 12;22(7):974-84. Epub 2014 Jun 12.

Department of Medicinal Chemistry, University of Washington, Seattle, WA 98195, USA. Electronic address:

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http://dx.doi.org/10.1016/j.str.2014.05.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4231881PMC
July 2014

Architectures of whole-module and bimodular proteins from the 6-deoxyerythronolide B synthase.

J Mol Biol 2014 May 2;426(11):2229-45. Epub 2014 Apr 2.

Department of Chemistry, Stanford University, Stanford, CA 94305, USA; Department of Chemical Engineering, Stanford University, Stanford, CA 94305, USA; Department of Biochemistry, Stanford University, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1016/j.jmb.2014.03.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4284093PMC
May 2014

[Effects of exogenous silicon on the pollination and fertility characteristics of hybrid rice under heat stress during anthesis].

Ying Yong Sheng Tai Xue Bao 2013 Nov;24(11):3113-22

College of Agriculture, Yangtze University, Jingzhou 434025, Hubei, China.

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November 2013

Structural study of hNck2 SH3 domain protein in solution by circular dichroism and X-ray solution scattering.

Biophys Chem 2013 May-Jun;175-176:39-46. Epub 2013 Feb 26.

Department of Physics, Kansai Medical University, 18-89 Uyama-Higashi, Hirakata 573-1136, Japan.

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http://dx.doi.org/10.1016/j.bpc.2013.02.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3925460PMC
September 2013

Virus assembly and maturation: auto-regulation through allosteric molecular switches.

J Mol Biol 2013 May 26;425(9):1488-96. Epub 2013 Feb 26.

Department of Integrative Structural and Computational Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1016/j.jmb.2013.02.021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3664304PMC
May 2013

Dynamics in cryo EM reconstructions visualized with maximum-likelihood derived variance maps.

J Struct Biol 2013 Mar 12;181(3):195-206. Epub 2012 Dec 12.

Electrical and Computer Engineering, Cornell University, NY 14853, USA.

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http://dx.doi.org/10.1016/j.jsb.2012.11.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3870017PMC
March 2013

Dissecting quasi-equivalence in nonenveloped viruses: membrane disruption is promoted by lytic peptides released from subunit pentamers, not hexamers.

J Virol 2012 Sep 3;86(18):9976-82. Epub 2012 Jul 3.

Department of Molecular Biology, The Scripps Research Institute, La Jolla California, USA.

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http://dx.doi.org/10.1128/JVI.01089-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3446560PMC
September 2012

Subunits fold at position-dependent rates during maturation of a eukaryotic RNA virus.

Proc Natl Acad Sci U S A 2010 Aug 26;107(32):14111-5. Epub 2010 Jul 26.

Department of Molecular Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1073/pnas.1004221107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2922577PMC
August 2010

Balanced electrostatic and structural forces guide the large conformational change associated with maturation of T = 4 virus.

Biophys J 2010 Apr;98(7):1337-43

Department of Molecular Biology, The Scripps Research Institute, La Jolla, California, USA.

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http://dx.doi.org/10.1016/j.bpj.2009.12.4283DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2849064PMC
April 2010

Characterization of large conformational changes and autoproteolysis in the maturation of a T=4 virus capsid.

J Virol 2009 Jan 5;83(2):1126-34. Epub 2008 Nov 5.

Department of Molecular Biology, The Scripps Research Institute, La Jolla, California 92037, USA.

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http://dx.doi.org/10.1128/JVI.01859-08DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2612371PMC
January 2009

[High temperature stress on rice anthesis: research progress and prospects].

Ying Yong Sheng Tai Xue Bao 2007 Nov;18(11):2632-6

College of Agriculture, Yangtze University, Jing-zhou 434025, Hubei, China.

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November 2007

Structural insight of human DEAD-box protein rck/p54 into its substrate recognition with conformational changes.

Genes Cells 2006 Apr;11(4):439-52

Department of Life Science, Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, Nagatsuta-cho 4259, Midori-ku, Yokohama, 226-8501, Japan.

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http://doi.wiley.com/10.1111/j.1365-2443.2006.00951.x
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http://dx.doi.org/10.1111/j.1365-2443.2006.00951.xDOI Listing
April 2006

Activation of genes for growth factor and cytokine pathways late in chondrogenic differentiation of ATDC5 cells.

Genomics 2006 Jul 4;88(1):52-64. Epub 2006 Apr 4.

Department of Functional Genomics, Chiba University Graduate School of Medicine, Chiba 260-8670, Japan.

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http://dx.doi.org/10.1016/j.ygeno.2006.02.013DOI Listing
July 2006

Crystallization and preliminary X-ray crystallographic analysis of chitinase F1 (ChiF1) from the alkaliphilic Nocardiopsis sp. strain F96.

Acta Crystallogr D Biol Crystallogr 2004 Nov 20;60(Pt 11):2016-8. Epub 2004 Oct 20.

Department of Life Science, Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori-ku, Yokohama 226-8501, Japan.

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http://scripts.iucr.org/cgi-bin/paper?S0907444904020475
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http://dx.doi.org/10.1107/S0907444904020475DOI Listing
November 2004

Crystallization and X-ray analysis of the N-terminal core domain of a tumour-associated human DEAD-box RNA helicase, rck/p54.

Acta Crystallogr D Biol Crystallogr 2004 Jan 18;60(Pt 1):156-9. Epub 2003 Dec 18.

Department of Life Science, Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori-ku, Yokohama 226-8501, Japan.

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http://dx.doi.org/10.1107/s0907444903024223DOI Listing
January 2004

A tumour-associated DEAD-box protein, rck/p54 exhibits RNA unwinding activity toward c-myc RNAs in vitro.

Genes Cells 2003 Aug;8(8):671-6

Department of Genetic Diagnosis, Gifu International Institute of Biotechnology, Kakamigahara, Gifu 504-0838, Japan.

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http://dx.doi.org/10.1046/j.1365-2443.2003.00665.xDOI Listing
August 2003

Characteristics of floral organs related to reliable self-pollination in rice (Oryza sativa L.).

Ann Bot 2003 Mar;91(4):473-7

Experimental Farm, Kyoto University, 12-1 Hatchonawate, Takatsuki, Osaka 569-0096, Japan.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4241067PMC
http://dx.doi.org/10.1093/aob/mcg045DOI Listing
March 2003

Rice (Oryza sativa L.) cultivars tolerant to high temperature at flowering: anther characteristics.

Ann Bot 2002 Jun;89(6):683-7

Experimental Farm, Kyoto University, Takatsuki, Osaka, Japan.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4233832PMC
http://dx.doi.org/10.1093/aob/mcf112DOI Listing
June 2002