Trupti Kawli

Trupti Kawli

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Trupti Kawli

Trupti Kawli

Publications by authors named "Trupti Kawli"

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17Publications

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Systematic evaluation of the impact of ChIP-seq read designs on genome coverage, peak identification, and allele-specific binding detection.

BMC Bioinformatics 2016 Feb 24;17:96. Epub 2016 Feb 24.

Department of Statistics, University of Wisconsin Madison, Madison, Wisconsin, USA.

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http://dx.doi.org/10.1186/s12859-016-0957-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4765064PMC
February 2016

Identification of STAT5A and STAT5B target genes in human T cells.

PLoS One 2014 30;9(1):e86790. Epub 2014 Jan 30.

Division of Immunology and Allergy, Department of Pediatrics, School of Medicine, Stanford University, Stanford, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0086790PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3907443PMC
December 2014

A comparative encyclopedia of DNA elements in the mouse genome.

Authors:
Feng Yue Yong Cheng Alessandra Breschi Jeff Vierstra Weisheng Wu Tyrone Ryba Richard Sandstrom Zhihai Ma Carrie Davis Benjamin D Pope Yin Shen Dmitri D Pervouchine Sarah Djebali Robert E Thurman Rajinder Kaul Eric Rynes Anthony Kirilusha Georgi K Marinov Brian A Williams Diane Trout Henry Amrhein Katherine Fisher-Aylor Igor Antoshechkin Gilberto DeSalvo Lei-Hoon See Meagan Fastuca Jorg Drenkow Chris Zaleski Alex Dobin Pablo Prieto Julien Lagarde Giovanni Bussotti Andrea Tanzer Olgert Denas Kanwei Li M A Bender Miaohua Zhang Rachel Byron Mark T Groudine David McCleary Long Pham Zhen Ye Samantha Kuan Lee Edsall Yi-Chieh Wu Matthew D Rasmussen Mukul S Bansal Manolis Kellis Cheryl A Keller Christapher S Morrissey Tejaswini Mishra Deepti Jain Nergiz Dogan Robert S Harris Philip Cayting Trupti Kawli Alan P Boyle Ghia Euskirchen Anshul Kundaje Shin Lin Yiing Lin Camden Jansen Venkat S Malladi Melissa S Cline Drew T Erickson Vanessa M Kirkup Katrina Learned Cricket A Sloan Kate R Rosenbloom Beatriz Lacerda de Sousa Kathryn Beal Miguel Pignatelli Paul Flicek Jin Lian Tamer Kahveci Dongwon Lee W James Kent Miguel Ramalho Santos Javier Herrero Cedric Notredame Audra Johnson Shinny Vong Kristen Lee Daniel Bates Fidencio Neri Morgan Diegel Theresa Canfield Peter J Sabo Matthew S Wilken Thomas A Reh Erika Giste Anthony Shafer Tanya Kutyavin Eric Haugen Douglas Dunn Alex P Reynolds Shane Neph Richard Humbert R Scott Hansen Marella De Bruijn Licia Selleri Alexander Rudensky Steven Josefowicz Robert Samstein Evan E Eichler Stuart H Orkin Dana Levasseur Thalia Papayannopoulou Kai-Hsin Chang Arthur Skoultchi Srikanta Gosh Christine Disteche Piper Treuting Yanli Wang Mitchell J Weiss Gerd A Blobel Xiaoyi Cao Sheng Zhong Ting Wang Peter J Good Rebecca F Lowdon Leslie B Adams Xiao-Qiao Zhou Michael J Pazin Elise A Feingold Barbara Wold James Taylor Ali Mortazavi Sherman M Weissman John A Stamatoyannopoulos Michael P Snyder Roderic Guigo Thomas R Gingeras David M Gilbert Ross C Hardison Michael A Beer Bing Ren

Nature 2014 Nov;515(7527):355-64

Ludwig Institute for Cancer Research and University of California, San Diego School of Medicine, 9500 Gilman Drive, La Jolla, California 92093, USA.

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http://dx.doi.org/10.1038/nature13992DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4266106PMC
November 2014

Dynamic trans-acting factor colocalization in human cells.

Cell 2013 Oct 24;155(3):713-24. Epub 2013 Oct 24.

Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1016/j.cell.2013.09.043DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4079469PMC
October 2013

Modulation of Caenorhabditis elegans infection sensitivity by the LIN-7 cell junction protein.

Cell Microbiol 2012 Oct 21;14(10):1584-99. Epub 2012 Jun 21.

Genome Institute of Singapore, Singapore, Singapore.

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http://dx.doi.org/10.1111/j.1462-5822.2012.01824.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3470699PMC
October 2012

Pleiotropic roles of a ribosomal protein in Dictyostelium discoideum.

PLoS One 2012 17;7(2):e30644. Epub 2012 Feb 17.

Department of Molecular Reproduction, Development and Genetics, Indian Institute of Science, Bangalore, India.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0030644PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3281849PMC
June 2012

A conserved PHD finger protein and endogenous RNAi modulate insulin signaling in Caenorhabditis elegans.

PLoS Genet 2011 Sep 29;7(9):e1002299. Epub 2011 Sep 29.

Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1002299DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3183084PMC
September 2011

It takes nerves to fight infections: insights on neuro-immune interactions from C. elegans.

Dis Model Mech 2010 Nov-Dec;3(11-12):721-31. Epub 2010 Sep 9.

Department of Genetics, Stanford University School of Medicine, Stanford, CA 394305, USA.

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http://dx.doi.org/10.1242/dmm.003871DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2965399PMC
February 2011

Systemic and cell intrinsic roles of Gqalpha signaling in the regulation of innate immunity, oxidative stress, and longevity in Caenorhabditis elegans.

Proc Natl Acad Sci U S A 2010 Aug 20;107(31):13788-93. Epub 2010 Jul 20.

Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1073/pnas.0914715107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2922217PMC
August 2010

Neuroendocrine signals modulate the innate immunity of Caenorhabditis elegans through insulin signaling.

Nat Immunol 2008 Dec 14;9(12):1415-24. Epub 2008 Oct 14.

Department of Genetics, Department of Microbiology and Immunology, and Program in Immunology, Stanford University School of Medicine, Stanford, California 94305, USA.

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http://dx.doi.org/10.1038/ni.1672DOI Listing
December 2008

Pseudomonas aeruginosa suppresses host immunity by activating the DAF-2 insulin-like signaling pathway in Caenorhabditis elegans.

PLoS Pathog 2008 Oct 17;4(10):e1000175. Epub 2008 Oct 17.

Department of Genetics, Stanford University School of Medicine, Stanford, California, United States of America.

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http://dx.doi.org/10.1371/journal.ppat.1000175DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2568960PMC
October 2008

Correlates of developmental cell death in Dictyostelium discoideum.

Differentiation 2002 Aug;70(6):272-81

Indian Institute of Science, Bangalore, India.

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http://dx.doi.org/10.1046/j.1432-0436.2002.700605.xDOI Listing
August 2002