Trudy Torto-Alalibo

Trudy Torto-Alalibo

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Trudy Torto-Alalibo

Trudy Torto-Alalibo

Publications by authors named "Trudy Torto-Alalibo"

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Genetic resources for methane production from biomass described with the Gene Ontology.

Front Microbiol 2014 3;5:634. Epub 2014 Dec 3.

Department of Biochemistry, Virginia Polytechnic Institute and State University Blacksburg, VA, USA ; Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University Blacksburg, VA, USA ; Department of Biological Sciences, Virginia Polytechnic Institute and State University Blacksburg, VA, USA.

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http://dx.doi.org/10.3389/fmicb.2014.00634DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4253957PMC
December 2014

Genetic resources for advanced biofuel production described with the Gene Ontology.

Front Microbiol 2014 10;5:528. Epub 2014 Oct 10.

Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University Blacksburg, VA, USA ; Center for Genome Research and Biocomputing, Oregon State University Corvallis, OR, USA.

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http://dx.doi.org/10.3389/fmicb.2014.00528DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4193338PMC
October 2014

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans.

Authors:
Brian J Haas Sophien Kamoun Michael C Zody Rays H Y Jiang Robert E Handsaker Liliana M Cano Manfred Grabherr Chinnappa D Kodira Sylvain Raffaele Trudy Torto-Alalibo Tolga O Bozkurt Audrey M V Ah-Fong Lucia Alvarado Vicky L Anderson Miles R Armstrong Anna Avrova Laura Baxter Jim Beynon Petra C Boevink Stephanie R Bollmann Jorunn I B Bos Vincent Bulone Guohong Cai Cahid Cakir James C Carrington Megan Chawner Lucio Conti Stefano Costanzo Richard Ewan Noah Fahlgren Michael A Fischbach Johanna Fugelstad Eleanor M Gilroy Sante Gnerre Pamela J Green Laura J Grenville-Briggs John Griffith Niklaus J Grünwald Karolyn Horn Neil R Horner Chia-Hui Hu Edgar Huitema Dong-Hoon Jeong Alexandra M E Jones Jonathan D G Jones Richard W Jones Elinor K Karlsson Sridhara G Kunjeti Kurt Lamour Zhenyu Liu Lijun Ma Daniel Maclean Marcus C Chibucos Hayes McDonald Jessica McWalters Harold J G Meijer William Morgan Paul F Morris Carol A Munro Keith O'Neill Manuel Ospina-Giraldo Andrés Pinzón Leighton Pritchard Bernard Ramsahoye Qinghu Ren Silvia Restrepo Sourav Roy Ari Sadanandom Alon Savidor Sebastian Schornack David C Schwartz Ulrike D Schumann Ben Schwessinger Lauren Seyer Ted Sharpe Cristina Silvar Jing Song David J Studholme Sean Sykes Marco Thines Peter J I van de Vondervoort Vipaporn Phuntumart Stephan Wawra Rob Weide Joe Win Carolyn Young Shiguo Zhou William Fry Blake C Meyers Pieter van West Jean Ristaino Francine Govers Paul R J Birch Stephen C Whisson Howard S Judelson Chad Nusbaum

Nature 2009 Sep 9;461(7262):393-8. Epub 2009 Sep 9.

Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02141, USA.

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http://dx.doi.org/10.1038/nature08358DOI Listing
September 2009

Infection strategies of filamentous microbes described with the Gene Ontology.

Trends Microbiol 2009 Jul 3;17(7):320-7. Epub 2009 Jul 3.

Virginia Bioinformatics Institute, Virginia Polytechnic and State University, Blacksburg, VA 24061, USA.

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http://dx.doi.org/10.1016/j.tim.2009.05.003DOI Listing
July 2009

The Plant-Associated Microbe Gene Ontology (PAMGO) Consortium: community development of new Gene Ontology terms describing biological processes involved in microbe-host interactions.

BMC Microbiol 2009 Feb 19;9 Suppl 1:S1. Epub 2009 Feb 19.

Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA.

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http://dx.doi.org/10.1186/1471-2180-9-S1-S1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2654661PMC
February 2009

Common and contrasting themes in host cell-targeted effectors from bacterial, fungal, oomycete and nematode plant symbionts described using the Gene Ontology.

BMC Microbiol 2009 Feb 19;9 Suppl 1:S3. Epub 2009 Feb 19.

Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA.

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http://dx.doi.org/10.1186/1471-2180-9-S1-S3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2654663PMC
February 2009

Programmed cell death in host-symbiont associations, viewed through the Gene Ontology.

BMC Microbiol 2009 Feb 19;9 Suppl 1:S5. Epub 2009 Feb 19.

Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA.

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http://dx.doi.org/10.1186/1471-2180-9-S1-S5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2654665PMC
February 2009

Common processes in pathogenesis by fungal and oomycete plant pathogens, described with Gene Ontology terms.

BMC Microbiol 2009 Feb 19;9 Suppl 1:S7. Epub 2009 Feb 19.

Center for Integrated Fungal Research, North Carolina State University, Raleigh, NC 27695, USA.

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http://dx.doi.org/10.1186/1471-2180-9-S1-S7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2654667PMC
February 2009

Gene Ontology annotation of the rice blast fungus, Magnaporthe oryzae.

BMC Microbiol 2009 Feb 19;9 Suppl 1:S8. Epub 2009 Feb 19.

Center for Integrated Fungal Research, North Carolina State University, Raleigh NC 27695, USA.

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http://dx.doi.org/10.1186/1471-2180-9-S1-S8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2654668PMC
February 2009

Expressed sequence tags from phytophthora sojae reveal genes specific to development and infection.

Mol Plant Microbe Interact 2007 Jul;20(7):781-93

Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA.

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http://dx.doi.org/10.1094/MPMI-20-7-0781DOI Listing
July 2007

Agroinfection-based high-throughput screening reveals specific recognition of INF elicitins in Solanum.

Mol Plant Pathol 2006 Nov;7(6):499-510

Department of Plant Sciences, Laboratory of Plant Breeding, Wageningen University, PO Box 386, 6700 AJ, Wageningen, The Netherlands.

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http://dx.doi.org/10.1111/j.1364-3703.2006.00355.xDOI Listing
November 2006

Cellulose binding domains of a Phytophthora cell wall protein are novel pathogen-associated molecular patterns.

Plant Cell 2006 Jul 9;18(7):1766-77. Epub 2006 Jun 9.

Unité Mixte de Recherche 5546, Centre National de la Recherche Scientifique-Université Paul Sabatier-Toulouse III, Pôle de Biotechnologie Végétale, 31326 Castanet-Tolosan, France.

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http://dx.doi.org/10.1105/tpc.105.038687DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1488925PMC
July 2006

Computational and comparative analyses of 150 full-length cDNA sequences from the oomycete plant pathogen Phytophthora infestans.

Fungal Genet Biol 2006 Jan 27;43(1):20-33. Epub 2005 Dec 27.

Department of Plant Pathology, The Ohio State University, Ohio Agricultural Research and Development Center, Wooster, OH 44691, USA.

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http://dx.doi.org/10.1016/j.fgb.2005.10.003DOI Listing
January 2006

Expressed sequence tags from the oomycete fish pathogen Saprolegnia parasitica reveal putative virulence factors.

BMC Microbiol 2005 Aug 2;5:46. Epub 2005 Aug 2.

Department of Plant Pathology, The Ohio State University, Ohio Agricultural Research and Development Center, Wooster, Ohio, USA.

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http://dx.doi.org/10.1186/1471-2180-5-46DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1192801PMC
August 2005

Patterns of diversifying selection in the phytotoxin-like scr74 gene family of Phytophthora infestans.

Mol Biol Evol 2005 Mar 17;22(3):659-72. Epub 2004 Nov 17.

Department of Plant Pathology, The Ohio State University, Ohio Agricultural Research and Development Center, Wooster, Ohio, USA.

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http://dx.doi.org/10.1093/molbev/msi049DOI Listing
March 2005

A Kazal-like extracellular serine protease inhibitor from Phytophthora infestans targets the tomato pathogenesis-related protease P69B.

J Biol Chem 2004 Jun 19;279(25):26370-7. Epub 2004 Apr 19.

Department of Plant Pathology, The Ohio State University, Ohio Agricultural Research and Development Center, Wooster, Ohio 44691, USA.

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http://www.jbc.org/lookup/doi/10.1074/jbc.M400941200
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http://dx.doi.org/10.1074/jbc.M400941200DOI Listing
June 2004