Publications by authors named "Tracy L Nicholson"

58Publications

Complete Genome Sequence of Bordetella bronchiseptica Strain KM22.

Microbiol Resour Announc 2020 Jan 23;9(4). Epub 2020 Jan 23.

National Animal Disease Center, Agriculture Research Service, USDA, Ames, Iowa, USA.

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January 2020

Complete Genome Sequence of Escherichia coli Antibiotic-Resistant Isolate AR Bank #0349.

Microbiol Resour Announc 2019 Nov 27;8(48). Epub 2019 Nov 27.

National Animal Disease Center, Agriculture Research Service, USDA, Ames, Iowa, USA

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November 2019

Subinhibitory Concentrations of Amoxicillin, Lincomycin, and Oxytetracycline Commonly Used to Treat Swine Increase Biofilm Formation.

Front Microbiol 2018 6;9:2707. Epub 2018 Nov 6.

United States Department of Agriculture, National Animal Disease Center, Agricultural Research Service, Ames, IA, United States.

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November 2018

Comparative genomic and methylome analysis of non-virulent D74 and virulent Nagasaki Haemophilus parasuis isolates.

PLoS One 2018 1;13(11):e0205700. Epub 2018 Nov 1.

National Animal Disease Center, Agricultural Research Service, USDA, Ames, Iowa, United States of America.

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April 2019

Antimicrobial Resistance Distribution Differs Among Methicillin Resistant Sequence Type (ST) 5 Isolates From Health Care and Agricultural Sources.

Front Microbiol 2018 11;9:2102. Epub 2018 Sep 11.

National Animal Disease Center, Agricultural Research Service, United States Department of Agriculture, Ames, IA, United States.

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September 2018

Draft Genome Sequences of 50 Methicillin-Resistant Sequence Type 5 Isolates Obtained from a U.S. Hospital.

Genome Announc 2017 Nov 2;5(44). Epub 2017 Nov 2.

National Animal Disease Center, Agriculture Research Service, USDA, Ames, Iowa, USA

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November 2017

Draft Genome Sequences of 63 Swine-Associated Methicillin-Resistant Sequence Type 5 Isolates from the United States.

Genome Announc 2017 Nov 2;5(44). Epub 2017 Nov 2.

National Animal Disease Center, Agriculture Research Service, USDA, Ames, Iowa, USA

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November 2017

Draft Genome Sequences of One Methicillin-Sensitive and Seven Methicillin-Resistant Sequence Type 5 Isolates Obtained in California.

Genome Announc 2017 Oct 19;5(42). Epub 2017 Oct 19.

National Animal Disease Center, Agriculture Research Service, USDA, Ames, Iowa, USA

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October 2017

Complete Genome Sequence of a Livestock-Associated Methicillin-Resistant Sequence Type 5 Isolate from the United States.

Genome Announc 2017 Aug 10;5(32). Epub 2017 Aug 10.

National Animal Disease Center, Agriculture Research Service, USDA, Ames, Iowa, USA

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August 2017

Complete Genome Sequence of Livestock-Associated Methicillin-Resistant Sequence Type 398 Isolated from Swine in the United States.

Genome Announc 2017 Aug 10;5(32). Epub 2017 Aug 10.

National Animal Disease Center, Agriculture Research Service, USDA, Ames, Iowa, USA

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August 2017

Zinc Resistance within Swine-Associated Methicillin-Resistant Staphylococcus aureus Isolates in the United States Is Associated with Multilocus Sequence Type Lineage.

Appl Environ Microbiol 2017 08 17;83(15). Epub 2017 Jul 17.

National Animal Disease Center, Agricultural Research Service, U.S. Department of Agriculture, Ames, Iowa, USA

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August 2017

Complete Genome Sequences of Two Sequence Type 5 Isolates from California, USA.

Genome Announc 2017 Mar 30;5(13). Epub 2017 Mar 30.

National Animal Disease Center, Agricultural Research Service, USDA, Ames, Iowa, USA

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March 2017

Draft Genome Sequences of 14 Sequence Type 5 Isolates from California, USA.

Genome Announc 2017 Mar 30;5(13). Epub 2017 Mar 30.

National Animal Disease Center, Agricultural Research Service, USDA, Ames, Iowa, USA

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March 2017

Comparison of ribotyping and sequence-based typing for discriminating among isolates of Bordetella bronchiseptica.

J Microbiol Methods 2016 10 16;129:117-126. Epub 2016 Aug 16.

Food Safety and Enteric Pathogens Research Unit, USDA/Agricultural Research Service/National Animal Disease Center, 1920 Dayton Avenue, Ames, IA 50010, United States.

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October 2016

Comparative genomic analysis of the swine pathogen Bordetella bronchisepticastrain KM22.

Vet Microbiol 2016 31;182:87-94. Epub 2015 Oct 31.

National Animal Disease Center, ARS, USDA, Ames, IA, United States.

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September 2016

Comparative Prevalence of Immune Evasion Complex Genes Associated with β-Hemolysin Converting Bacteriophages in MRSA ST5 Isolates from Swine, Swine Facilities, Humans with Swine Contact, and Humans with No Swine Contact.

PLoS One 2015 10;10(11):e0142832. Epub 2015 Nov 10.

National Animal Disease Center, Agricultural Research Service, United States Department of Agriculture, Ames, Iowa, United States of America.

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June 2016

Draft Genome Sequences of Nine Streptococcus suis Strains Isolated in the United States.

Genome Announc 2015 Nov 5;3(6). Epub 2015 Nov 5.

National Animal Disease Center, Agricultural Research Service, USDA, Ames, Iowa, USA

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November 2015

Bordetella pertussis transmission.

Pathog Dis 2015 Nov 14;73(8):ftv068. Epub 2015 Sep 14.

Division of Bacterial, Parasitic and Allergenic Products, Center for Biologics Evaluation and Research, FDA, Bethesda, MD 20892, USA

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November 2015

Virulence and draft genome sequence overview of multiple strains of the swine pathogen Haemophilus parasuis.

PLoS One 2014 19;9(8):e103787. Epub 2014 Aug 19.

Department of Veterinary Microbiology and Preventive Medicine, College of Veterinary Medicine, Iowa State University, Ames, Iowa, United States of America.

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October 2015

Draft Genome Sequence of the Bordetella bronchiseptica Swine Isolate KM22.

Genome Announc 2014 Jul 10;2(4). Epub 2014 Jul 10.

National Animal Disease Center, Agricultural Research Service, Department of Agriculture, Ames, Iowa, USA.

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July 2014

Comparative analyses of a cystic fibrosis isolate of Bordetella bronchiseptica reveal differences in important pathogenic phenotypes.

Infect Immun 2014 Apr 27;82(4):1627-37. Epub 2014 Jan 27.

Department of Microbiology and Immunology, Wake Forest University Health Sciences, Winston-Salem, North Carolina, USA.

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April 2014

Livestock-associated methicillin-resistant Staphylococcus aureus (LA-MRSA) isolates of swine origin form robust biofilms.

PLoS One 2013 9;8(8):e73376. Epub 2013 Aug 9.

National Animal Disease Center, Agricultural Research Service, United States Department of Agriculture, Ames, Iowa, USA.

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March 2014

Transcriptome profiling reveals stage-specific production and requirement of flagella during biofilm development in Bordetella bronchiseptica.

PLoS One 2012 12;7(11):e49166. Epub 2012 Nov 12.

National Animal Disease Center, Agricultural Research Service, USDA, Ames, Iowa, United States of America.

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May 2013

Genomic sequence and virulence comparison of four Type 2 porcine reproductive and respiratory syndrome virus strains.

Virus Res 2012 Oct 7;169(1):212-21. Epub 2012 Aug 7.

Virus and Prion Research Unit, National Animal Disease Center, USDA, Agricultural Research Service, Ames, IA 50010, United States.

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October 2012

Porcine TLR3 characterization and expression in response to influenza virus and Bordetella bronchiseptica.

Vet Immunol Immunopathol 2011 Jul 20;142(1-2):57-63. Epub 2011 Apr 20.

National Animal Disease Center, USDA/ARS, Ames, IA 50010, USA.

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July 2011

Utility of a panviral microarray for detection of swine respiratory viruses in clinical samples.

J Clin Microbiol 2011 Apr 26;49(4):1542-8. Epub 2011 Jan 26.

Virus and Prion Research Unit, National Animal Disease Center, Agricultural Research Service, USDA, Ames, IA 50010, USA.

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April 2011

Evaluation of specificity of BP3385 for Bordetella pertussis detection.

J Clin Microbiol 2010 Sep 14;48(9):3334-7. Epub 2010 Jul 14.

Respiratory Diseases of Livestock Research Unit, USDA/ARS/National Animal Disease Center, P.O. Box 70, 1920 Dayton Road, Ames, IA 50010, USA.

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September 2010

Influenza virus coinfection with Bordetella bronchiseptica enhances bacterial colonization and host responses exacerbating pulmonary lesions.

Microb Pathog 2010 Nov 15;49(5):237-45. Epub 2010 Jun 15.

Respiratory Diseases of Livestock Research Unit, USDA, Agricultural Research Service, National Animal Disease Center, Ames, IA 50010, USA.

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November 2010

Microarray and functional analysis of growth phase-dependent gene regulation in Bordetella bronchiseptica.

Infect Immun 2009 Oct 10;77(10):4221-31. Epub 2009 Aug 10.

Respiratory Diseases of Livestock Research Unit, National Animal Disease Center, Agricultural Research Service, USDA, 2300 Dayton Ave., Ames, IA 50010, USA.

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October 2009

Characterization and comparative analysis of the genes encoding Haemophilus parasuis outer membrane proteins P2 and P5.

J Bacteriol 2009 Oct 24;191(19):5988-6002. Epub 2009 Jul 24.

Respiratory Diseases of Livestock Research Unit, USDA Agricultural Research Service National Animal Disease Center, Ames, IA 50010, USA.

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October 2009

Role of the type III secretion system in a hypervirulent lineage of Bordetella bronchiseptica.

Infect Immun 2009 Sep 13;77(9):3969-77. Epub 2009 Jul 13.

Department of Veterinary and Biomedical Sciences, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.

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September 2009

Evidence for horizontal gene transfer of two antigenically distinct O antigens in Bordetella bronchiseptica.

Infect Immun 2009 Aug 15;77(8):3249-57. Epub 2009 Jun 15.

Department of Veterinary and Biomedical Sciences, The Pennsylvania State University, University Park, 16802, USA.

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August 2009

Contribution of Bordetella bronchiseptica filamentous hemagglutinin and pertactin to respiratory disease in swine.

Infect Immun 2009 May 23;77(5):2136-46. Epub 2009 Feb 23.

Respiratory Diseases of Livestock Research Unit, National Animal Disease Center, ARS, USDA, 2300 Dayton Ave., Ames, IA 50010, USA.

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May 2009

Replacement of adenylate cyclase toxin in a lineage of Bordetella bronchiseptica.

J Bacteriol 2008 Aug 13;190(15):5502-11. Epub 2008 Jun 13.

Department of Veterinary and Biomedical Sciences, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.

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August 2008

Misidentification of Bordetella bronchiseptica as Bordetella pertussis using a newly described real-time PCR targeting the pertactin gene.

J Med Microbiol 2007 Dec;56(Pt 12):1608-1610

Respiratory Diseases of Livestock Research Unit, USDA/Agricultural Research Service/National Animal Disease Center, Ames, IA 50010, USA.

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December 2007

Construction and validation of a first-generation Bordetella bronchiseptica long-oligonucleotide microarray by transcriptional profiling the Bvg regulon.

BMC Genomics 2007 Jul 6;8:220. Epub 2007 Jul 6.

Respiratory Diseases of Livestock Research Unit, National Animal Disease Center, USDA, Agricultural Research Service, Ames, Iowa 50010, USA.

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July 2007

Chlamydia trachomatis lacks an adaptive response to changes in carbon source availability.

Infect Immun 2004 Jul;72(7):4286-9

Program in Infectious Diseases, School of Public Health, University of California-Berkeley, 140 Earl Warren Hall, Berkeley, CA 94720-7360, USA.

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July 2004

Microarray-based genomic surveying of gene polymorphisms in Chlamydia trachomatis.

Genome Biol 2004 18;5(6):R42. Epub 2004 May 18.

Program in Infectious Diseases, University of California, Berkeley, CA 94720-7360, USA.

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October 2004

Global stage-specific gene regulation during the developmental cycle of Chlamydia trachomatis.

J Bacteriol 2003 May;185(10):3179-89

Division of Infectious Diseases, School of Public Health, University of California, Berkeley, California 94720, USA.

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May 2003