Tony Godfrey

Tony Godfrey

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Tony Godfrey

Tony Godfrey

Publications by authors named "Tony Godfrey"

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The Molecular Biologic Basis of Esophageal and Gastric Cancers.

Surg Clin North Am 2019 Jun;99(3):403-418

Department of Cardiothoracic Surgery, University of Pittsburgh Medical Center, The University of Pittsburgh School of Medicine, University of Pittsburgh, 200 Lothrop St. Suite C-800, Pittsburgh, PA 15213, USA.

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http://dx.doi.org/10.1016/j.suc.2019.02.010DOI Listing
June 2019

Impact of Polymerase Fidelity on Background Error Rates in Next-Generation Sequencing with Unique Molecular Identifiers/Barcodes.

Sci Rep 2019 Mar 5;9(1):3503. Epub 2019 Mar 5.

Department of Surgery, Boston University School of Medicine, 700 Albany Street, Boston, MA, 02118, USA.

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http://dx.doi.org/10.1038/s41598-019-39762-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6401092PMC
March 2019

Considerations and quality controls when analyzing cell-free tumor DNA.

Biomol Detect Quantif 2019 Mar 13;17:100078. Epub 2019 Feb 13.

Sahlgrenska Cancer Center, Department of Pathology and Genetics, Institute of Biomedicine, Sahlgrenska Academy at University of Gothenburg, Medicinaregatan 1F, 413 90, Gothenburg, Sweden.

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http://dx.doi.org/10.1016/j.bdq.2018.12.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6416156PMC
March 2019

Corrigendum to "Considerations and quality controls when analyzing cell-free tumor DNA" [Biomol. Detect. Quantif. 17 (2019) 100078].

Biomol Detect Quantif 2019 Mar 18;17:100091. Epub 2019 Jun 18.

Sahlgrenska Cancer Center, Department of Pathology and Genetics, Institute of Biomedicine, Sahlgrenska Academy at University of Gothenburg, Medicinaregatan 1F, 413 90 Gothenburg, Sweden.

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http://dx.doi.org/10.1016/j.bdq.2019.100091DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6587021PMC
March 2019

miRNA profiling of primary lung and head and neck squamous cell carcinomas: Addressing a diagnostic dilemma.

J Thorac Cardiovasc Surg 2017 08 12;154(2):714-727. Epub 2017 Apr 12.

Division of Thoracic Surgery, Department of Surgery, Boston University School of Medicine, Boston, Mass. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00225223173067
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http://dx.doi.org/10.1016/j.jtcvs.2017.02.071DOI Listing
August 2017

Simple multiplexed PCR-based barcoding of DNA for ultrasensitive mutation detection by next-generation sequencing.

Nat Protoc 2017 04 2;12(4):664-682. Epub 2017 Mar 2.

Department of Surgery, Boston University School of Medicine, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1038/nprot.2017.006DOI Listing
April 2017

Simple, multiplexed, PCR-based barcoding of DNA enables sensitive mutation detection in liquid biopsies using sequencing.

Nucleic Acids Res 2016 06 7;44(11):e105. Epub 2016 Apr 7.

Department of Surgery, Boston University School of Medicine, 700 Albany Street, Boston, MA 02118, USA

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http://dx.doi.org/10.1093/nar/gkw224DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4914102PMC
June 2016

Properties of targeted preamplification in DNA and cDNA quantification.

Expert Rev Mol Diagn 2015 1;15(8):1085-100. Epub 2015 Jul 1.

Sahlgrenska Cancer Center, Department of Pathology, Sahlgrenska Academy at University of Gothenburg, Box 425, 40530 Gothenburg, Sweden.

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http://www.tandfonline.com/doi/full/10.1586/14737159.2015.10
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http://dx.doi.org/10.1586/14737159.2015.1057124DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4673511PMC
April 2016

Vitamin D receptor is highly expressed in precancerous lesions and esophageal adenocarcinoma with significant sex difference.

Hum Pathol 2014 Aug 15;45(8):1744-51. Epub 2014 May 15.

Department of Biochemistry, Rush University Medical Center, Chicago, IL 60612. Electronic address:

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http://dx.doi.org/10.1016/j.humpath.2014.02.029DOI Listing
August 2014

Comparison of cancer-associated genetic abnormalities in columnar-lined esophagus tissues with and without goblet cells.

Ann Surg 2014 Jul;260(1):72-80

*Departments of Surgery ‡Pathology, and ‖Biostatistics, University of Rochester Medical Center, Strong Memorial Hospital, Rochester, NY †Life Technologies, Foster City, CA **Dana Farber Cancer Center, Boston, MA ††University of Michigan, Ann Arbor, MI ¶University of Pittsburgh, Pittsburgh, PA; and §Department of Surgery, Boston University, Boston, MA.

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http://dx.doi.org/10.1097/SLA.0000000000000424DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4047149PMC
July 2014

Cyclin E involved in early stage carcinogenesis of esophageal adenocarcinoma by SNP DNA microarray and immunohistochemical studies.

BMC Gastroenterol 2014 Apr 17;14:78. Epub 2014 Apr 17.

Departments of Pathology and Laboratory Medicine, University of Rochester, Rochester, 601 Elmwood Ave, Box 626, Rochester, NY 14642, USA.

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http://dx.doi.org/10.1186/1471-230X-14-78DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3998234PMC
April 2014

Bile acid at low pH reduces squamous differentiation and activates EGFR signaling in esophageal squamous cells in 3-D culture.

J Gastrointest Surg 2013 Oct 7;17(10):1723-31. Epub 2013 Aug 7.

Department of Biology, University of Rochester, Rochester, NY, USA.

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http://dx.doi.org/10.1007/s11605-013-2287-1DOI Listing
October 2013

Correlation of tumor marker expression with nodal disease burden in metastatic head and neck cancer.

Otolaryngol Head Neck Surg 2013 Aug 26;149(2):261-8. Epub 2013 Apr 26.

Department of Otolaryngology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania 15213, USA.

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http://journals.sagepub.com/doi/10.1177/0194599813486876
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http://dx.doi.org/10.1177/0194599813486876DOI Listing
August 2013

Gene expression profiles in esophageal adenocarcinoma predict survival after resection.

J Thorac Cardiovasc Surg 2013 Feb;145(2):505-12; discussion 512-3

Department of Cardiothoracic Surgery, University of Pittsburgh Medical Center, Pittsburgh, PA, USA.

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http://dx.doi.org/10.1016/j.jtcvs.2012.10.031DOI Listing
February 2013

Clinicopathologic characteristics of high expression of Bmi-1 in esophageal adenocarcinoma and squamous cell carcinoma.

BMC Gastroenterol 2012 Oct 18;12:146. Epub 2012 Oct 18.

Department of Pathology and Laboratory Medicine, University of Rochester Medical Center, 601 Elmwood Ave, Rochester, NY 14642, USA.

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http://dx.doi.org/10.1186/1471-230X-12-146DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3544684PMC
October 2012

Comparative genomics of esophageal adenocarcinoma and squamous cell carcinoma.

Ann Thorac Surg 2012 Apr;93(4):1101-6

Department of Surgery, University of Rochester School of Medicine and Dentistry, Rochester, New York 14642-8410, USA.

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https://linkinghub.elsevier.com/retrieve/pii/S00034975120017
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http://dx.doi.org/10.1016/j.athoracsur.2012.01.064DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3401935PMC
April 2012

Intraoperative qRT-PCR for detection of lymph node metastasis in head and neck cancer.

Clin Cancer Res 2011 Apr 25;17(7):1858-66. Epub 2011 Feb 25.

Department of Otolaryngology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.

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http://dx.doi.org/10.1158/1078-0432.CCR-10-3110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5270507PMC
April 2011

Quantitative expression and immunogenicity of MAGE-3 and -6 in upper aerodigestive tract cancer.

Int J Cancer 2009 Oct;125(8):1912-20

Department of Otolaryngology, University of Pittsburgh Cancer Institute, Pittsburgh, PA, USA.

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http://dx.doi.org/10.1002/ijc.24590DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2757316PMC
October 2009

Molecular staging of pathologically negative sentinel lymph nodes from melanoma patients using multimarker, quantitative real-time rt-PCR.

Ann Surg Oncol 2009 Jan 4;16(1):177-85. Epub 2008 Nov 4.

Department of Dermatology, Hospital Universitario Germans Trias i Pujol, Badalona, Universidad Autónoma de Barcelona, Barcelona, Spain.

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http://dx.doi.org/10.1245/s10434-008-0183-9DOI Listing
January 2009

MicroRNA expression profiles of esophageal cancer.

J Thorac Cardiovasc Surg 2008 Feb 26;135(2):255-60; discussion 260. Epub 2007 Dec 26.

Department of Pathology, Mount Sinai Medical Center, New York, NY 10029, USA.

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http://dx.doi.org/10.1016/j.jtcvs.2007.08.055DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2265073PMC
February 2008

Comprehensive genome and transcriptome analysis of the 11q13 amplicon in human oral cancer and synteny to the 7F5 amplicon in murine oral carcinoma.

Genes Chromosomes Cancer 2006 Nov;45(11):1058-69

Department of Human Genetics, University of Pittsburgh Graduate School of Public Health, Pittsburgh, PA 15261, USA.

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http://doi.wiley.com/10.1002/gcc.20371
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http://dx.doi.org/10.1002/gcc.20371DOI Listing
November 2006

Identification of mRNA markers for molecular staging of lymph nodes in colorectal cancer.

Clin Chem 2006 Mar;52(3):520-3

Department of Surgery, University of Pittsburgh, Pittsburgh, PA 15261, USA.

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http://dx.doi.org/10.1373/clinchem.2005.062844DOI Listing
March 2006

Technology for automated, rapid, and quantitative PCR or reverse transcription-PCR clinical testing.

Clin Chem 2005 May 3;51(5):882-90. Epub 2005 Mar 3.

Department of Surgery, Hillman Cancer Center, University of Pittsburgh, Pittsburgh, PA 15213, USA.

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http://dx.doi.org/10.1373/clinchem.2004.046474DOI Listing
May 2005

Molecular staging of cervical lymph nodes in squamous cell carcinoma of the head and neck.

Cancer Res 2005 Mar;65(6):2147-56

Department of Otolaryngology and Immunology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.

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http://dx.doi.org/10.1158/0008-5472.CAN-04-3717DOI Listing
March 2005

Development of quantitative reverse transcriptase PCR assays for measuring gene expression.

Methods Mol Biol 2005 ;291:423-45

Department of Medicine, Mount Sinai School of Medicine, New York, NY, USA.

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February 2005

Molecular staging of lymph nodes from patients with esophageal adenocarcinoma.

Clin Cancer Res 2005 Feb;11(3):1099-109

Department of Surgery, University of Pittsburgh, Pittsburgh, PA, USA.

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February 2005

Quantitative analysis of circulating plasma DNA as a tumor marker in thoracic malignancies.

Clin Chem 2005 Jan 11;51(1):113-8. Epub 2004 Nov 11.

Department of Surgery, University of Pittsburgh, Pittsburgh, PA, USA.

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http://dx.doi.org/10.1373/clinchem.2004.039263DOI Listing
January 2005

Chemokine receptors 6 and 7 identify a metastatic expression pattern in squamous cell carcinoma of the head and neck.

Adv Otorhinolaryngol 2005 ;62:121-33

Department of Otolaryngology, University of Pittsburgh School of Medicine, Hillman Cancer Center, Pittsburgh, PA 15213, USA.

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http://dx.doi.org/10.1159/000082501DOI Listing
January 2005

The HGF receptor c-Met is overexpressed in esophageal adenocarcinoma.

Neoplasia 2005 Jan;7(1):75-84

Department of Surgery, University of Pittsburgh and the Hillman Cancer Center, Pittsburgh, PA 15261, USA.

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http://dx.doi.org/10.1593/neo.04367DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1490312PMC
January 2005

Tests for finding complex patterns of differential expression in cancers: towards individualized medicine.

BMC Bioinformatics 2004 Aug 12;5:110. Epub 2004 Aug 12.

Department of Pathology, Center for Biomedical Informatics, and Interdisciplinary Biomedical Graduate Program, University of Pittsburgh, PA 15232 USA.

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http://dx.doi.org/10.1186/1471-2105-5-110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC514539PMC
August 2004

Characterization of amplifiable, circulating RNA in plasma and its potential as a tool for cancer diagnostics.

Clin Chem 2004 Mar 12;50(3):564-73. Epub 2004 Jan 12.

Division of Thoracic Surgery, School of Medicine, Hillman Cancer Center, University of Pittsburgh, Pittsburgh, PA 15213, USA.

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http://www.clinchem.org/content/50/3/564.full.pdf
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http://www.clinchem.org/cgi/doi/10.1373/clinchem.2003.028506
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http://dx.doi.org/10.1373/clinchem.2003.028506DOI Listing
March 2004

Expression pattern of chemokine receptor 6 (CCR6) and CCR7 in squamous cell carcinoma of the head and neck identifies a novel metastatic phenotype.

Cancer Res 2004 Mar;64(5):1861-6

Department of Otolaryngology and Immunology, University of Pittsburgh Cancer Institute, Pittsburgh, Pennsylvania 15213, USA.

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http://cancerres.aacrjournals.org/content/canres/64/5/1861.f
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March 2004

Prognostic significance of micrometastasis in non-small-cell lung cancer.

Clin Lung Cancer 2004 Jan;5(4):214-25

Division of Thoracic Surgery, University of Pittsburgh, PA 15213, USA.

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http://dx.doi.org/10.3816/CLC.2004.n.002DOI Listing
January 2004

Temperature-controlled primer limit for multiplexing of rapid, quantitative reverse transcription-PCR assays: application to intraoperative cancer diagnostics.

Clin Chem 2002 Aug;48(8):1329-37

Division of Thoracic Surgery, University of Pittsburgh Medical Center, PA 15213, USA.

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August 2002

High-resolution mapping of the 11q13 amplicon and identification of a gene, TAOS1, that is amplified and overexpressed in oral cancer cells.

Proc Natl Acad Sci U S A 2002 Aug 9;99(17):11369-74. Epub 2002 Aug 9.

Department of Human Genetics, University of Pittsburgh Graduate School of Public Health, Pittsburgh, PA 15261, USA.

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http://dx.doi.org/10.1073/pnas.172285799DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC123263PMC
August 2002

Rapid, quantitative reverse transcriptase-polymerase chain reaction: application to intraoperative molecular detection of occult metastases in esophageal cancer.

J Thorac Cardiovasc Surg 2002 Mar;123(3):475-82; discussion 482-3

Department of Surgery, University of Pittsburgh Medical Center, Pittsburgh, PA 15213, USA.

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March 2002

Real-time quantitative polymerase chain reaction: a potential tool for genetic analysis in neuropathology.

Brain Pathol 2002 Jan;12(1):54-66

Department of Pathology, University of Texas MD Anderson Cancer Center, Houston 77030, USA.

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January 2002