Publications by authors named "Toni Gabaldón"

220 Publications

Factors enforcing the species boundary between the human pathogens Cryptococcus neoformans and Cryptococcus deneoformans.

PLoS Genet 2021 Jan 19;17(1):e1008871. Epub 2021 Jan 19.

Department of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina, United States of America.

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January 2021

Elevated Vacuolar Uptake of Fluorescently Labeled Antifungal Drug Caspofungin Predicts Echinocandin Resistance in Pathogenic Yeast.

ACS Cent Sci 2020 Oct 9;6(10):1698-1712. Epub 2020 Sep 9.

School of Chemistry, Raymond & Beverly Sackler Faculty of Exact Sciences, Tel Aviv University, Tel Aviv 6997801, Israel.

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October 2020

Timing the origin of eukaryotic cellular complexity with ancient duplications.

Nat Ecol Evol 2021 01 26;5(1):92-100. Epub 2020 Oct 26.

Theoretical Biology and Bioinformatics, Department of Biology, Faculty of Science, Utrecht University, Utrecht, the Netherlands.

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January 2021

Genomic evidence for recurrent genetic admixture during the domestication of Mediterranean olive trees (Olea europaea L.).

BMC Biol 2020 10 26;18(1):148. Epub 2020 Oct 26.

Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, 08003, Barcelona, Spain.

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October 2020

Target Enrichment Enables the Discovery of lncRNAs with Somatic Mutations or Altered Expression in Paraffin-Embedded Colorectal Cancer Samples.

Cancers (Basel) 2020 Oct 1;12(10). Epub 2020 Oct 1.

Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Baldiri Reixac 10, 08028 Barcelona, Spain.

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October 2020

Phenotypic Variability in a Coinfection With Three Independent Lineages.

Front Microbiol 2020 27;11:1994. Epub 2020 Aug 27.

Institute for Medical Microbiology, University Medical Center Göttingen, Göttingen, Germany.

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August 2020

Correction to: The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest.

BMC Biol 2020 Sep 11;18(1):123. Epub 2020 Sep 11.

IGEPP, Agrocampus Ouest, INRAE, Université de Rennes 1, 35650, Le Rheu, France.

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September 2020

Patterns and impacts of nonvertical evolution in eukaryotes: a paradigm shift.

Authors:
Toni Gabaldón

Ann N Y Acad Sci 2020 09 28;1476(1):78-92. Epub 2020 Aug 28.

Barcelona Supercomputing Centre (BCS-CNS), Barcelona, Spain.

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September 2020

The Quiet and Underappreciated Rise of Drug-Resistant Invasive Fungal Pathogens.

J Fungi (Basel) 2020 Aug 18;6(3). Epub 2020 Aug 18.

Center for Discovery and Innovation, Hackensack Meridian Health, Nutley, NJ 07110, USA.

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August 2020

Discovery of EMRE in fungi resolves the true evolutionary history of the mitochondrial calcium uniporter.

Nat Commun 2020 08 12;11(1):4031. Epub 2020 Aug 12.

Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, 08003, Barcelona, Spain.

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August 2020

Strain I-1582, a Nematode Antagonist by Itself and Through the Plant.

Front Plant Sci 2020 10;11:796. Epub 2020 Jul 10.

Departament d'Enginyeria Agroalimentària i Biotecnologia, Universitat Politècnica de Catalunya, Barcelona, Spain.

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July 2020

Differential Expression of Fungal Genes Determines the Lifestyle of Strains During Colonization.

Mol Plant Microbe Interact 2020 Nov 1;33(11):1299-1314. Epub 2020 Oct 1.

Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM)-Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus Montegancedo-UPM, 28223-Pozuelo de Alarcón (Madrid), Spain.

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November 2020

The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest.

BMC Biol 2020 07 23;18(1):90. Epub 2020 Jul 23.

IGEPP, Agrocampus Ouest, INRAE, Université de Rennes 1, 35650, Le Rheu, France.

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July 2020

Hybridization and the origin of new yeast lineages.

Authors:
Toni Gabaldón

FEMS Yeast Res 2020 Aug;20(5)

Barcelona Supercomputing Centre (BSC-CNS), Jordi Girona 29, 08034 Barcelona, Spain.

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August 2020

Integrative Omics Analysis Reveals a Limited Transcriptional Shock After Yeast Interspecies Hybridization.

Front Genet 2020 7;11:404. Epub 2020 May 7.

Centre for Genomic Regulation, Barcelona Institute of Science and Technology, Barcelona, Spain.

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May 2020

Genomic evidence for a hybrid origin of the yeast opportunistic pathogen Candida albicans.

BMC Biol 2020 05 6;18(1):48. Epub 2020 May 6.

Centre for Genomic Regulation, The Barcelona Institute of Science and Technology, Dr. Aiguader 88, 08003, Barcelona, Spain.

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May 2020

MetaPhOrs 2.0: integrative, phylogeny-based inference of orthology and paralogy across the tree of life.

Nucleic Acids Res 2020 07;48(W1):W553-W557

Barcelona Supercomputing Centre (BSC-CNS), 08034 Barcelona, Spain.

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July 2020

Fungal evolution: cellular, genomic and metabolic complexity.

Biol Rev Camb Philos Soc 2020 10 17;95(5):1198-1232. Epub 2020 Apr 17.

Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona, 08003, Spain.

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October 2020

The Human Oral Microbiome in Health and Disease: From Sequences to Ecosystems.

Microorganisms 2020 Feb 23;8(2). Epub 2020 Feb 23.

Barcelona Supercomputing Centre (BCS-CNS). Jordi Girona, 29. 08034 Barcelona, Spain.

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February 2020

Commercial Formulates of Induce Systemic Plant Resistance to in Tomato and the Effect Is Additive to That of the Resistance Gene.

Front Microbiol 2019 31;10:3042. Epub 2020 Jan 31.

Department of Agri-Food Engineering and Biotechnology, Universitat Politècnica de Catalunya, Barcelona, Spain.

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January 2020

Gene gain and loss across the metazoan tree of life.

Nat Ecol Evol 2020 04 28;4(4):524-533. Epub 2020 Jan 28.

Bioinformatics and Genomics Unit, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology, Barcelona, Spain.

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April 2020