Publications by authors named "Tongwu Zhang"

46Publications

Genetic and epigenetic intratumor heterogeneity impacts prognosis of lung adenocarcinoma.

Nat Commun 2020 05 18;11(1):2459. Epub 2020 May 18.

Integrative Epidemiology Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, DHHS, Bethesda, MD, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/s41467-020-16295-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7235245PMC
May 2020

Regulation of eIF2α by RNF4 Promotes Melanoma Tumorigenesis and Therapy Resistance.

J Invest Dermatol 2020 Dec 29;140(12):2466-2477. Epub 2020 Apr 29.

Rappaport Research Institute and Faculty of Medicine, Technion Integrative Cancer Center, Technion-Israel Institute of Technology, Haifa, Israel. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jid.2020.04.008DOI Listing
December 2020

Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.

Authors:
Maria Teresa Landi D Timothy Bishop Stuart MacGregor Mitchell J Machiela Alexander J Stratigos Paola Ghiorzo Myriam Brossard Donato Calista Jiyeon Choi Maria Concetta Fargnoli Tongwu Zhang Monica Rodolfo Adam J Trower Chiara Menin Jacobo Martinez Andreas Hadjisavvas Lei Song Irene Stefanaki Richard Scolyer Rose Yang Alisa M Goldstein Miriam Potrony Katerina P Kypreou Lorenza Pastorino Paola Queirolo Cristina Pellegrini Laura Cattaneo Matthew Zawistowski Pol Gimenez-Xavier Arantxa Rodriguez Lisa Elefanti Siranoush Manoukian Licia Rivoltini Blair H Smith Maria A Loizidou Laura Del Regno Daniela Massi Mario Mandala Kiarash Khosrotehrani Lars A Akslen Christopher I Amos Per A Andresen Marie-Françoise Avril Esther Azizi H Peter Soyer Veronique Bataille Bruna Dalmasso Lisa M Bowdler Kathryn P Burdon Wei V Chen Veryan Codd Jamie E Craig Tadeusz Dębniak Mario Falchi Shenying Fang Eitan Friedman Sarah Simi Pilar Galan Zaida Garcia-Casado Elizabeth M Gillanders Scott Gordon Adele Green Nelleke A Gruis Johan Hansson Mark Harland Jessica Harris Per Helsing Anjali Henders Marko Hočevar Veronica Höiom David Hunter Christian Ingvar Rajiv Kumar Julie Lang G Mark Lathrop Jeffrey E Lee Xin Li Jan Lubiński Rona M Mackie Maryrose Malt Josep Malvehy Kerrie McAloney Hamida Mohamdi Anders Molven Eric K Moses Rachel E Neale Srdjan Novaković Dale R Nyholt Håkan Olsson Nicholas Orr Lars G Fritsche Joan Anton Puig-Butille Abrar A Qureshi Graham L Radford-Smith Juliette Randerson-Moor Celia Requena Casey Rowe Nilesh J Samani Marianna Sanna Dirk Schadendorf Hans-Joachim Schulze Lisa A Simms Mark Smithers Fengju Song Anthony J Swerdlow Nienke van der Stoep Nicole A Kukutsch Alessia Visconti Leanne Wallace Sarah V Ward Lawrie Wheeler Richard A Sturm Amy Hutchinson Kristine Jones Michael Malasky Aurelie Vogt Weiyin Zhou Karen A Pooley David E Elder Jiali Han Belynda Hicks Nicholas K Hayward Peter A Kanetsky Chad Brummett Grant W Montgomery Catherine M Olsen Caroline Hayward Alison M Dunning Nicholas G Martin Evangelos Evangelou Graham J Mann Georgina Long Paul D P Pharoah Douglas F Easton Jennifer H Barrett Anne E Cust Goncalo Abecasis David L Duffy David C Whiteman Helen Gogas Arcangela De Nicolo Margaret A Tucker Julia A Newton-Bishop Ketty Peris Stephen J Chanock Florence Demenais Kevin M Brown Susana Puig Eduardo Nagore Jianxin Shi Mark M Iles Matthew H Law

Nat Genet 2020 05 27;52(5):494-504. Epub 2020 Apr 27.

Statistical Genetics, QIMR Berghofer Medical Research Institute, Brisbane, Queensland, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/s41588-020-0611-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7255059PMC
May 2020

A Transcriptome-Wide Association Study Identifies Novel Candidate Susceptibility Genes for Pancreatic Cancer.

J Natl Cancer Inst 2020 Oct;112(10):1003-1012

Laboratory of Translational Genomics, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/jnci/djz246DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7566474PMC
October 2020

Thermoresponsive starch-based particle-stabilized Pickering high internal phase emulsions as nutraceutical containers for controlled release.

Int J Biol Macromol 2020 Mar 3;146:171-178. Epub 2020 Jan 3.

Key Laboratory of Polymer Ecomaterials, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun 130022, PR China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ijbiomac.2019.12.269DOI Listing
March 2020

Contribution of Common Genetic Variants to Familial Aggregation of Disease and Implications for Sequencing Studies.

PLoS Genet 2019 11 15;15(11):e1008490. Epub 2019 Nov 15.

Biostatistics Branch: Division of Cancer Epidemiology and Genetics, National Cancer Institute, Rockville, Maryland, United States of America.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pgen.1008490DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6881075PMC
November 2019

Genetic Heterogeneity of BRAF Fusion Kinases in Melanoma Affects Drug Responses.

Cell Rep 2019 10;29(3):573-588.e7

Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA 94158, USA; Department of Dermatology, University of California, San Francisco, San Francisco, CA 94115, USA; Department of Pathology, University of California, San Francisco, San Francisco, CA 94115, USA. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.celrep.2019.09.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6939448PMC
October 2019

Cell-type-specific eQTL of primary melanocytes facilitates identification of melanoma susceptibility genes.

Genome Res 2018 11 17;28(11):1621-1635. Epub 2018 Oct 17.

Laboratory of Translational Genomics, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.

View Article

Download full-text PDF

Source
http://genome.cshlp.org/lookup/doi/10.1101/gr.233304.117
Publisher Site
http://dx.doi.org/10.1101/gr.233304.117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6211648PMC
November 2018

Regulation of S100A8 Stability by RNF5 in Intestinal Epithelial Cells Determines Intestinal Inflammation and Severity of Colitis.

Cell Rep 2018 09;24(12):3296-3311.e6

Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA 92037, USA; Technion Integrated Cancer Center, Faculty of Medicine, Technion, Israel Institute of Technology, Haifa, 31096, Israel. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.celrep.2018.08.057DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6185744PMC
September 2018

SHARPIN-mediated regulation of protein arginine methyltransferase 5 controls melanoma growth.

J Clin Invest 2018 01 11;128(1):517-530. Epub 2017 Dec 11.

Tumor Initiation and Maintenance Program, Cancer Center, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, California, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1172/JCI95410DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5749505PMC
January 2018

Promoter Mutations Ablate GABP Transcription Factor Binding in Melanoma.

Cancer Res 2017 04 20;77(7):1649-1661. Epub 2017 Jan 20.

Laboratory of Translational Genomics, Division of Cancer Epidemiology and Genetics, NCI, NIH, Bethesda, Maryland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1158/0008-5472.CAN-16-0919DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6711603PMC
April 2017

A Transcriptionally Inactive ATF2 Variant Drives Melanomagenesis.

Cell Rep 2016 05 19;15(9):1884-92. Epub 2016 May 19.

Tumor Initiation and Maintenance Program, Cancer Center, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA 92037, USA. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.celrep.2016.04.072DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4889472PMC
May 2016

The genomic landscape of cutaneous melanoma.

Pigment Cell Melanoma Res 2016 May 4;29(3):266-83. Epub 2016 Mar 4.

Oncogenomics Laboratory, QIMR Berghofer Medical Research Institute, Herston, Qld, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/pcmr.12459DOI Listing
May 2016

An interaction proteomics survey of transcription factor binding at recurrent TERT promoter mutations.

Proteomics 2016 Feb 8;16(3):417-26. Epub 2016 Jan 8.

Radboud Institute of Molecular Life Sciences, Radboud University Nijmegen, Nijmegen, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/pmic.201500327DOI Listing
February 2016

BIGrat: a repeat resolver for pyrosequencing-based re-sequencing with Newbler.

BMC Res Notes 2012 Oct 15;5:567. Epub 2012 Oct 15.

CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100029, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1756-0500-5-567DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3599625PMC
October 2012

The organelle genomes of Hassawi rice (Oryza sativa L.) and its hybrid in saudi arabia: genome variation, rearrangement, and origins.

PLoS One 2012 31;7(7):e42041. Epub 2012 Jul 31.

Joint Center for Genomics Research-JCGR, King Abdulaziz City for Science and Technology and Chinese Academy of Sciences, Riyadh, Kingdom of Saudi Arabia and Beijing, China.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0042041PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3409126PMC
January 2013

Large-scale collection and annotation of gene models for date palm (Phoenix dactylifera, L.).

Plant Mol Biol 2012 Aug 27;79(6):521-36. Epub 2012 Jun 27.

Joint Center for Genomics Research, King Abdulaziz City for Science and Technology and Chinese Academy of Sciences, Riyadh, Kingdom of Saudi Arabia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s11103-012-9924-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3402680PMC
August 2012

A complete sequence and transcriptomic analyses of date palm (Phoenix dactylifera L.) mitochondrial genome.

PLoS One 2012 24;7(5):e37164. Epub 2012 May 24.

Joint Center for Genomics Research (JCGR), King Abdulaziz City for Science and Technology (KACST) and Chinese Academy of Sciences (CAS), Riyadh, Kingdom of Saudi Arabia.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0037164PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3360038PMC
September 2012

Sequencing and analysis of four BAC clones containing innate immune genes from the Zhikong scallop (Chlamys farreri).

Gene 2012 Jul 20;502(1):9-15. Epub 2012 Apr 20.

Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, Shandong, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.gene.2012.04.009DOI Listing
July 2012

BIGpre: a quality assessment package for next-generation sequencing data.

Genomics Proteomics Bioinformatics 2011 Dec;9(6):238-44

CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100029, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/S1672-0229(11)60027-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054156PMC
December 2011

An efficient procedure for plant organellar genome assembly, based on whole genome data from the 454 GS FLX sequencing platform.

Plant Methods 2011 Nov 29;7:38. Epub 2011 Nov 29.

Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100029, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1746-4811-7-38DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3248859PMC
November 2011

Genomic analysis of the multidrug-resistant Acinetobacter baumannii strain MDR-ZJ06 widely spread in China.

Antimicrob Agents Chemother 2011 Oct 25;55(10):4506-12. Epub 2011 Jul 25.

Department of Respiratory Diseases, First Affiliated Hospital, College of Medicine, Zhejiang University, Hangzhou, Zhejiang 310003, China.

View Article

Download full-text PDF

Source
http://aac.asm.org/lookup/doi/10.1128/AAC.01134-10
Publisher Site
http://dx.doi.org/10.1128/AAC.01134-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3187012PMC
October 2011

Nucleotide compositional asymmetry between the leading and lagging strands of eubacterial genomes.

Res Microbiol 2010 Dec 22;161(10):838-46. Epub 2010 Sep 22.

Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100029, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.resmic.2010.09.015DOI Listing
December 2010