Tomoko Ohta

Tomoko Ohta

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Tomoko Ohta

Tomoko Ohta

Publications by authors named "Tomoko Ohta"

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Lysosomal dysfunction and early glial activation are involved in the pathogenesis of spinocerebellar ataxia type 21 caused by mutant transmembrane protein 240.

Neurobiol Dis 2018 12 2;120:34-50. Epub 2018 Sep 2.

Department of Chemico-Pharmacological Sciences, Graduate School of Pharmaceutical Sciences, Kumamoto University, Kumamoto, Japan.

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http://dx.doi.org/10.1016/j.nbd.2018.08.022DOI Listing
December 2018

Suppressive effects of mycoviral proteins encoded by Magnaporthe oryzae chrysovirus 1 strain A on conidial germination of the rice blast fungus.

Virus Res 2016 09 18;223:10-9. Epub 2016 Jun 18.

Laboratories of Molecular and Cellular Biology, Graduate School of Agriculture, Tokyo University of Agriculture and Technology, 3-5-8 Saiwaicho, Fuchu, Tokyo 183-8509, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.virusres.2016.06.010DOI Listing
September 2016

Cell line name recognition in support of the identification of synthetic lethality in cancer from text.

Bioinformatics 2016 Jan 1;32(2):276-82. Epub 2015 Oct 1.

Department of Information Technology, University of Turku, 20014, Finland, Language Technology Lab (LTL), University of Cambridge, Cambridge CB3 9DA, United Kingdom.

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http://dx.doi.org/10.1093/bioinformatics/btv570DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4708107PMC
January 2016

Atmospheric direct uptake and long-term fate of radiocesium in trees after the Fukushima nuclear accident.

Sci Rep 2014 Nov 20;4:7121. Epub 2014 Nov 20.

Fukushima Forestry Research Centre, Koriyama, Fukushima 963-0112, Japan.

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http://dx.doi.org/10.1038/srep07121DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5382682PMC
November 2014

A method for integrating and ranking the evidence for biochemical pathways by mining reactions from text.

Bioinformatics 2013 Jul;29(13):i44-52

The National Centre for Text Mining and School of Computer Science and School of Chemistry and the Manchester Institute of Biotechnology, The University of Manchester, Manchester M1 7DN, UK.

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http://dx.doi.org/10.1093/bioinformatics/btt227DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3694679PMC
July 2013

Wide coverage biomedical event extraction using multiple partially overlapping corpora.

BMC Bioinformatics 2013 Jun 3;14:175. Epub 2013 Jun 3.

The National Centre for Text Mining and School of Computer Science, Manchester Institute of Biotechnology, University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK.

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http://dx.doi.org/10.1186/1471-2105-14-175DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3680179PMC
June 2013

BioCause: Annotating and analysing causality in the biomedical domain.

BMC Bioinformatics 2013 Jan 16;14. Epub 2013 Jan 16.

The National Centre for Text Mining, School of Computer Science, The University of Manchester, 131 Princess Street, Manchester M1 7DN, UK.

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http://dx.doi.org/10.1186/1471-2105-14-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3621543PMC
January 2013

Prediction of groundwater contamination with 137Cs and 131I from the Fukushima nuclear accident in the Kanto district.

J Environ Radioact 2012 Sep 29;111:38-41. Epub 2011 Dec 29.

Faculty of Engineering, Hokkaido University, Kitaku, Sapporo, Hokkaido 060-8628, Japan.

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http://dx.doi.org/10.1016/j.jenvrad.2011.11.017DOI Listing
September 2012

Event extraction across multiple levels of biological organization.

Bioinformatics 2012 Sep;28(18):i575-i581

National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester, UK.

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http://dx.doi.org/10.1093/bioinformatics/bts407DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3436834PMC
September 2012

Weak selection and protein evolution.

Genetics 2012 Sep;192(1):15-31

Division of Evolutionary Genetics, Department of Population Genetics, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.

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http://dx.doi.org/10.1534/genetics.112.140178DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3430532PMC
September 2012

Characterization of Magnaporthe oryzae chrysovirus 1 structural proteins and their expression in Saccharomyces cerevisiae.

J Virol 2012 Aug 23;86(15):8287-95. Epub 2012 May 23.

Laboratory of Molecular and Cellular Biology, Tokyo University of Agriculture and Technology, Fuchu, Tokyo, Japan.

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http://dx.doi.org/10.1128/JVI.00871-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3421670PMC
August 2012

Tomoko Ohta.

Authors:
Tomoko Ohta

Curr Biol 2012 Aug;22(16):R618-9

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http://dx.doi.org/10.1016/j.cub.2012.06.031DOI Listing
August 2012

Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011.

BMC Bioinformatics 2012 Jun 26;13 Suppl 11:S2. Epub 2012 Jun 26.

School of Computer Science, University of Manchester, Manchester, UK.

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http://dx.doi.org/10.1186/1471-2105-13-S11-S2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3384257PMC
June 2012

Near-neutrality, robustness, and epigenetics.

Authors:
Tomoko Ohta

Genome Biol Evol 2011 ;3:1034-8

Department of Population Genetics, National Institute of Genetics, Mishima, Japan.

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http://dx.doi.org/10.1093/gbe/evr012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3227401PMC
January 2012

An analysis of gene/protein associations at PubMed scale.

J Biomed Semantics 2011 Oct 6;2 Suppl 5:S5. Epub 2011 Oct 6.

Department of Computer Science, University of Tokyo, Tokyo, Japan.

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http://dx.doi.org/10.1186/2041-1480-2-S5-S5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3239305PMC
October 2011

Linguistic scope-based and biological event-based speculation and negation annotations in the BioScope and Genia Event corpora.

J Biomed Semantics 2011 Oct 6;2 Suppl 5:S8. Epub 2011 Oct 6.

Research Group on Artificial Intelligence, Hungarian Academy of Sciences, Szeged, Hungary.

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http://dx.doi.org/10.1186/2041-1480-2-S5-S8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3239308PMC
October 2011

Event extraction for DNA methylation.

J Biomed Semantics 2011 Oct 6;2 Suppl 5:S2. Epub 2011 Oct 6.

Department of Computer Science, University of Tokyo, Tokyo, Japan.

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http://dx.doi.org/10.1186/2041-1480-2-S5-S2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3239302PMC
October 2011

Improving the inter-corpora compatibility for protein annotations.

J Bioinform Comput Biol 2010 Oct;8(5):901-16

Department of Computer Science, University of Tokyo, 7-3-1 Hongo, Bunkyo-Ku, Tokyo, 113-0033, Japan.

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http://dx.doi.org/10.1142/s0219720010004999DOI Listing
October 2010

A re-evaluation of biomedical named entity-term relations.

J Bioinform Comput Biol 2010 Oct;8(5):917-28

Department of Computer Science, University of Tokyo, Tokyo, Japan.

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http://dx.doi.org/10.1142/s0219720010005014DOI Listing
October 2010

Gene conversion and evolution of gene families: an overview.

Authors:
Tomoko Ohta

Genes (Basel) 2010 Sep 30;1(3):349-56. Epub 2010 Sep 30.

National Institute of Genetics, Mishima, 411-8540, Japan.

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http://dx.doi.org/10.3390/genes1030349DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3966226PMC
September 2010

New challenges for text mining: mapping between text and manually curated pathways.

BMC Bioinformatics 2008 Apr 11;9 Suppl 3:S5. Epub 2008 Apr 11.

Department of Computer Science, Graduate School of Information Science and Technology, University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, Japan.

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http://dx.doi.org/10.1186/1471-2105-9-S3-S5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2352872PMC
April 2008

Corpus annotation for mining biomedical events from literature.

BMC Bioinformatics 2008 Jan 8;9:10. Epub 2008 Jan 8.

Department of Computer Science, School of Information Science and Technology, University of Tokyo, Tokyo, Japan.

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http://dx.doi.org/10.1186/1471-2105-9-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2267702PMC
January 2008

Ciliated cyst of the vulva.

Eur J Dermatol 2004 Sep-Oct;14(5):347-9

Department of Dermatology, Graduate School of Medical Sciences, Kyushu University, 3-1-1, Maidashi, Higashi-ku, Fukuoka, Japan.

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December 2004

Evolution by gene duplication revisited: differentiation of regulatory elements versus proteins.

Authors:
Tomoko Ohta

Genetica 2003 Jul;118(2-3):209-16

National Institute of Genetics, Mishima 411-8540, Japan.

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July 2003

Origin of the neutral and nearly neutral theories of evolution.

Authors:
Tomoko Ohta

J Biosci 2003 Jun;28(4):371-7

National Institute of Genetics, Mishima 411-8540, Japan.

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http://dx.doi.org/10.1007/bf02705113DOI Listing
June 2003

Near-neutrality in evolution of genes and gene regulation.

Authors:
Tomoko Ohta

Proc Natl Acad Sci U S A 2002 Dec 2;99(25):16134-7. Epub 2002 Dec 2.

National Institute of Genetics, Mishima 411-8540, Japan.

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http://dx.doi.org/10.1073/pnas.252626899DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC138577PMC
December 2002

FURTHER SIMULATION STUDIES ON EVOLUTION BY GENE DUPLICATION.

Authors:
Tomoko Ohta

Evolution 1988 Mar;42(2):375-386

National Institute of Genetics, Mishima 411, Japan.

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http://dx.doi.org/10.1111/j.1558-5646.1988.tb04140.xDOI Listing
March 1988