Publications by authors named "Tomas Rejtar"

39Publications

Integrated microscale analysis system for targeted liquid chromatography mass spectrometry proteomics on limited amounts of enriched cell populations.

Anal Chem 2013 Nov 30;85(22):10680-5. Epub 2013 Oct 30.

Novartis Institutes for Biomedical Research , Cambridge, Massachusetts 02139, United States.

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http://dx.doi.org/10.1021/ac401937cDOI Listing
November 2013

Histone deacetylase activity is necessary for left-right patterning during vertebrate development.

BMC Dev Biol 2011 May 20;11:29. Epub 2011 May 20.

Department of Biology Center for Regenerative and Developmental Biology Tufts University, Medford, MA 02155 USA.

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http://dx.doi.org/10.1186/1471-213X-11-29DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3113753PMC
May 2011

Shotgun proteomic analysis of yeast-elicited California poppy (Eschscholzia californica) suspension cultures producing enhanced levels of benzophenanthridine alkaloids.

J Proteome Res 2010 Sep;9(9):4337-45

Department of Chemical Engineering, 342 Snell Engineering Center, 360 Huntington Avenue, Northeastern University, Boston, Massachusetts 02115, USA.

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http://dx.doi.org/10.1021/pr1000412DOI Listing
September 2010

Improved sample preparation method for glycan analysis of glycoproteins by CE-LIF and CE-MS.

Electrophoresis 2010 Apr;31(8):1389-95

Barnett Institute, Northeastern University, Boston, MA, USA.

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http://dx.doi.org/10.1002/elps.201000037DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2898890PMC
April 2010

Desulfurization of cysteine-containing peptides resulting from sample preparation for protein characterization by mass spectrometry.

Rapid Commun Mass Spectrom 2010 Feb;24(3):267-75

Barnett Institute and Department of Chemistry and Chemical Biology, Northeastern University, Boston, MA 02115, USA.

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http://doi.wiley.com/10.1002/rcm.4383
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http://dx.doi.org/10.1002/rcm.4383DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2908508PMC
February 2010

CLUE-TIPS, clustering methods for pattern analysis of LC-MS data.

J Proteome Res 2009 Oct;8(10):4732-42

Barnett Institute of Chemical and Biological Analysis, Northeastern University, Boston, Massachusetts 02115, USA.

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http://dx.doi.org/10.1021/pr900427qDOI Listing
October 2009

TAT peptide and its conjugates: proteolytic stability.

Bioconjug Chem 2009 Aug 14;20(8):1531-7. Epub 2009 Jul 14.

Department of Pharmaceutical Sciences, Northeastern University, Boston, Massachusetts 02115, USA.

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http://dx.doi.org/10.1021/bc900081eDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2889171PMC
August 2009

Optimization of poly(GMA-co-EDMA) monolithic support for trypsin nanoreactor fabrication.

J Chromatogr Sci 2009 Jul;47(6):467-72

Horváth Laboratory of Bioseparation Sciences, University of Innsbruck, Austria.

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http://dx.doi.org/10.1093/chromsci/47.6.467DOI Listing
July 2009

Centrifugal methods and devices for rapid in-gel digestion of proteins.

Electrophoresis 2009 Mar;30(6):966-73

Barnett Institute of Chemical and Biological Analysis, Northeastern University, Boston, MA, USA.

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http://dx.doi.org/10.1002/elps.200800474DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2907145PMC
March 2009

SeMoP: a new computational strategy for the unrestricted search for modified peptides using LC-MS/MS data.

J Proteome Res 2008 Sep 8;7(9):4199-208. Epub 2008 Aug 8.

Barnett Institute and Department of Chemistry and Chemical Biology, Northeastern University, Boston, Massachusetts 02115, USA.

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http://dx.doi.org/10.1021/pr800277yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2556171PMC
September 2008

N-Glycan structure annotation of glycopeptides using a linearized glycan structure database (GlyDB).

J Proteome Res 2007 Aug 11;6(8):3162-73. Epub 2007 Jul 11.

Barnett Institute and Department of Chemistry and Chemical Biology, Northeastern University, Boston, Massachusetts 02115, USA.

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http://dx.doi.org/10.1021/pr070111yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2557434PMC
August 2007

Comprehensive proteomic mass spectrometric characterization of human cannabinoid CB2 receptor.

J Proteome Res 2007 Jun 2;6(6):2068-79. Epub 2007 May 2.

Center for Drug Discovery, Northeastern University, Boston, Massachusetts 02115, USA.

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http://dx.doi.org/10.1021/pr060671hDOI Listing
June 2007

A new algorithm using cross-assignment for label-free quantitation with LC-LTQ-FT MS.

J Proteome Res 2007 Jun 19;6(6):2186-94. Epub 2007 Apr 19.

Barnett Institute and Department of Chemistry and Chemical Biology, Northeastern University, Boston, Massachusetts 02115, USA.

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http://dx.doi.org/10.1021/pr0606880DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2563808PMC
June 2007

An unconventional pathway for reduction of CO2 to methane in CO-grown Methanosarcina acetivorans revealed by proteomics.

Proc Natl Acad Sci U S A 2006 Nov 13;103(47):17921-6. Epub 2006 Nov 13.

Department of Biochemistry and Molecular Biology and Center for Microbial Structural Biology, Pennsylvania State University, University Park, PA 16802, USA.

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http://dx.doi.org/10.1073/pnas.0608833103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1693848PMC
November 2006

Kinase activity of overexpressed HipA is required for growth arrest and multidrug tolerance in Escherichia coli.

J Bacteriol 2006 Dec 13;188(24):8360-7. Epub 2006 Oct 13.

Department of Biology, Northeastern University, 405 Mugar Hall, 360 Huntington Avenue, Boston, MA 02115, USA.

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http://dx.doi.org/10.1128/JB.01237-06DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1698217PMC
December 2006

New algorithm for 15N/14N quantitation with LC-ESI-MS using an LTQ-FT mass spectrometer.

J Proteome Res 2006 Aug;5(8):2039-45

Barnett Institute and Department of Chemistry, Northeastern University, Boston, Massachusetts 02115, USA.

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http://pubs.acs.org/doi/abs/10.1021/pr060105m
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http://dx.doi.org/10.1021/pr060105mDOI Listing
August 2006

Electron transport in the pathway of acetate conversion to methane in the marine archaeon Methanosarcina acetivorans.

J Bacteriol 2006 Jan;188(2):702-10

Department of Biochemistry and Molecular Biology, and Center for Microbial Structural Biology, 205 South Frear Laboratory, The Pennsylvania State University, University Park, PA 16802, USA.

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http://dx.doi.org/10.1128/JB.188.2.702-710.2006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347274PMC
January 2006

Enhanced characterization of complex proteomic samples using LC-MALDI MS/MS: exclusion of redundant peptides from MS/MS analysis in replicate runs.

Anal Chem 2005 Dec;77(23):7816-25

Barnett Institute and Department of Chemistry and Chemical Biology, Northeastern University, Boston, Massachusetts 02115, USA.

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http://dx.doi.org/10.1021/ac050956yDOI Listing
December 2005

High-speed, high-resolution monolithic capillary LC-MALDI MS using an off-line continuous deposition interface for proteomic analysis.

Anal Chem 2005 Apr;77(8):2323-31

Barnett Institute and Department of Chemistry and Chemical Biology, Northeastern University, 341 Mugar, 360 Huntington Avenue, Boston, Massachusetts 02115, USA.

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http://dx.doi.org/10.1021/ac048322zDOI Listing
April 2005

Coumarin tags for analysis of peptides by MALDI-TOF MS and MS/MS. 2. Alexa Fluor 350 tag for increased peptide and protein Identification by LC-MALDI-TOF/TOF MS.

Anal Chem 2005 Apr;77(7):2085-96

Barnett Institute and Department of Chemistry, Northeastern University, 341 Mugar, 360 Huntington Avenue, Boston, Massachusetts 02115, USA.

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http://dx.doi.org/10.1021/ac048375gDOI Listing
April 2005

Proteome of Methanosarcina acetivorans Part II: comparison of protein levels in acetate- and methanol-grown cells.

J Proteome Res 2005 Jan-Feb;4(1):129-35

Center for Microbial Structural Biology, Department of Biochemistry and Molecular Biology, 205 South Frear Laboratory, Penn State University, University Park, Pennsylvania 16802, USA.

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http://dx.doi.org/10.1021/pr049831kDOI Listing
September 2005

Proteome of Methanosarcina acetivorans Part I: an expanded view of the biology of the cell.

J Proteome Res 2005 Jan-Feb;4(1):112-28

Center for Microbial Structural Biology, Department of Biochemistry and Molecular Biology, 205 South Frear Laboratory, Penn State University, University Park, Pennsylvania 16802, USA.

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http://dx.doi.org/10.1021/pr049832cDOI Listing
September 2005

Increased identification of peptides by enhanced data processing of high-resolution MALDI TOF/TOF mass spectra prior to database searching.

Anal Chem 2004 Oct;76(20):6017-28

Barnett Institute and Department of Chemistry, Northeastern University, Boston, Massachusetts 02115, USA.

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http://pubs.acs.org/doi/abs/10.1021/ac049247v
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http://dx.doi.org/10.1021/ac049247vDOI Listing
October 2004

A universal denoising and peak picking algorithm for LC-MS based on matched filtration in the chromatographic time domain.

Anal Chem 2003 Nov;75(22):6314-26

Barnett Institute and Department of Chemistry, Northeastern University, Boston, Massachusetts 02115, USA.

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http://pubs.acs.org/doi/abs/10.1021/ac0301806
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http://dx.doi.org/10.1021/ac0301806DOI Listing
November 2003

Off-line coupling of high-resolution capillary electrophoresis to MALDI-TOF and TOF/TOF MS.

J Proteome Res 2002 Mar-Apr;1(2):171-9

Barnett Institute and Department of Chemistry, Northeastern University, Boston, Massachusetts 02115, USA.

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http://dx.doi.org/10.1021/pr015519oDOI Listing
April 2003

Capillary array electrophoresis-MALDI mass spectrometry using a vacuum deposition interface.

Anal Chem 2002 Jan;74(1):17-25

Barnett Institute and Department of Chemistry, Northeastern University, Boston, Massachusetts 02115, USA.

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http://dx.doi.org/10.1021/ac010692pDOI Listing
January 2002