Tomas Pluskal

Tomas Pluskal

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Tomas Pluskal

Tomas Pluskal

Publications by authors named "Tomas Pluskal"

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Metabolomics Data Preprocessing Using ADAP and MZmine 2.

Methods Mol Biol 2020 ;2104:25-48

Department of Nutrition, School of Public Health, NIH Eastern Regional Comprehensive Metabolomics Resource Core (ERCMRC), Nutrition Research Institute, University of North Carolina at Chapel Hill, Kannapolis, NC, USA.

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http://dx.doi.org/10.1007/978-1-0716-0239-3_3DOI Listing
January 2020

PBS3 and EPS1 Complete Salicylic Acid Biosynthesis from Isochorismate in Arabidopsis.

Mol Plant 2019 12 22;12(12):1577-1586. Epub 2019 Nov 22.

Whitehead Institute for Biomedical Research, 455 Main Street, Cambridge, MA 02142, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA. Electronic address:

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http://dx.doi.org/10.1016/j.molp.2019.11.005DOI Listing
December 2019

Independent evolution of rosmarinic acid biosynthesis in two sister families under the Lamiids clade of flowering plants.

J Biol Chem 2019 Oct 3;294(42):15193-15205. Epub 2019 Sep 3.

Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139

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http://dx.doi.org/10.1074/jbc.RA119.010454DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6802498PMC
October 2019

The biosynthetic origin of psychoactive kavalactones in kava.

Nat Plants 2019 08 22;5(8):867-878. Epub 2019 Jul 22.

Whitehead Institute for Biomedical Research, Cambridge, MA, USA.

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http://dx.doi.org/10.1038/s41477-019-0474-0DOI Listing
August 2019

The Reference Genome Sequence of Scutellaria baicalensis Provides Insights into the Evolution of Wogonin Biosynthesis.

Mol Plant 2019 07 15;12(7):935-950. Epub 2019 Apr 15.

Shanghai Key Laboratory of Plant Functional Genomics and Resources, Shanghai Chenshan Botanical Garden, Shanghai Chenshan Plant Science Research Center, Chinese Academy of Sciences, Shanghai, China; John Innes Centre, Norwich NR4 7UH, UK. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S16742052193013
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http://dx.doi.org/10.1016/j.molp.2019.04.002DOI Listing
July 2019

Contribution of Untargeted Metabolomics for Future Assessment of Biotech Crops.

Trends Plant Sci 2018 12 22;23(12):1047-1056. Epub 2018 Oct 22.

Whitehead Institute for Biomedical Research, Cambridge, MA 02142, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S13601385183021
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http://dx.doi.org/10.1016/j.tplants.2018.09.011DOI Listing
December 2018

Monoamine Biosynthesis via a Noncanonical Calcium-Activatable Aromatic Amino Acid Decarboxylase in Psilocybin Mushroom.

ACS Chem Biol 2018 12 10;13(12):3343-3353. Epub 2018 Dec 10.

Whitehead Institute for Biomedical Research , 455 Main Street , Cambridge , Massachusetts 02142 , United States.

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http://pubs.acs.org/doi/10.1021/acschembio.8b00821
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http://dx.doi.org/10.1021/acschembio.8b00821DOI Listing
December 2018

Genetic regulation of mitotic competence in G quiescent cells.

Sci Adv 2018 08 15;4(8):eaat5685. Epub 2018 Aug 15.

G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University (OIST), Onna, Okinawa, Japan.

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http://advances.sciencemag.org/lookup/doi/10.1126/sciadv.aat
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http://dx.doi.org/10.1126/sciadv.aat5685DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6093628PMC
August 2018

Natural product modulators of human sensations and mood: molecular mechanisms and therapeutic potential.

Chem Soc Rev 2018 Mar;47(5):1592-1637

Whitehead Institute for Biomedical Research, 455 Main Street, Cambridge, MA 02142, USA.

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http://dx.doi.org/10.1039/c7cs00411gDOI Listing
March 2018

Complete Pathway Elucidation and Heterologous Reconstitution of Rhodiola Salidroside Biosynthesis.

Mol Plant 2018 01 20;11(1):205-217. Epub 2017 Dec 20.

Whitehead Institute for Biomedical Research, 455 Main Street, Cambridge, MA 02142, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.molp.2017.12.007DOI Listing
January 2018

A Red Algal Bourbonane Sesquiterpene Synthase Defined by Microgram-Scale NMR-Coupled Crystalline Sponge X-ray Diffraction Analysis.

J Am Chem Soc 2017 11 14;139(46):16838-16844. Epub 2017 Nov 14.

Whitehead Institute for Biomedical Research , 455 Main Street, Cambridge, Massachusetts 02142, United States.

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http://dx.doi.org/10.1021/jacs.7b09452DOI Listing
November 2017

Influence of Mass Resolving Power in Orbital Ion-Trap Mass Spectrometry-Based Metabolomics.

Anal Chem 2016 12 23;88(23):11429-11435. Epub 2016 Nov 23.

Laboratory of Metabolomics, Institute of Molecular and Translational Medicine, Palacký University in Olomouc , Hněvotínská 5, 775 15 Olomouc, Czech Republic.

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http://dx.doi.org/10.1021/acs.analchem.6b02319DOI Listing
December 2016

Preparation of Intracellular Metabolite Extracts from Liquid Schizosaccharomyces pombe Cultures.

Cold Spring Harb Protoc 2016 12 1;2016(12). Epub 2016 Dec 1.

G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University (OIST), Onna-son, Kunigami, Okinawa 904-0495, Japan.

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http://www.cshprotocols.org/lookup/doi/10.1101/pdb.prot09155
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http://dx.doi.org/10.1101/pdb.prot091553DOI Listing
December 2016

Measurement of Metabolome Samples Using Liquid Chromatography-Mass Spectrometry, Data Acquisition, and Processing.

Cold Spring Harb Protoc 2016 12 1;2016(12). Epub 2016 Dec 1.

G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University (OIST), Onna-son, Kunigami, Okinawa 904-0495, Japan.

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http://www.cshprotocols.org/lookup/doi/10.1101/pdb.prot09156
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http://dx.doi.org/10.1101/pdb.prot091561DOI Listing
December 2016

Metabolomic Analysis of Schizosaccharomyces pombe: Sample Preparation, Detection, and Data Interpretation.

Cold Spring Harb Protoc 2016 12 1;2016(12). Epub 2016 Dec 1.

G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University (OIST), Onna-son, Kunigami, Okinawa 904-0495, Japan.

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http://www.cshprotocols.org/lookup/doi/10.1101/pdb.top079921
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http://dx.doi.org/10.1101/pdb.top079921DOI Listing
December 2016

A Transcript-Specific eIF3 Complex Mediates Global Translational Control of Energy Metabolism.

Cell Rep 2016 08 28;16(7):1891-902. Epub 2016 Jul 28.

Tumor Initiation and Maintenance Program, Sanford Burnham Prebys Medical Discovery Institute, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA; School of Pharmaceutical Sciences and Center for Stress Signaling Networks, Xiamen University, Xiang'An South Road, Xiamen 361102, China; San Diego Center for Systems Biology, La Jolla, CA 92093, USA. Electronic address:

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http://www.cell.com/cell-reports/pdf/S2211-1247(16)30892-0.p
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http://linkinghub.elsevier.com/retrieve/pii/S221112471630892
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http://dx.doi.org/10.1016/j.celrep.2016.07.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4988921PMC
August 2016

Diverse fission yeast genes required for responding to oxidative and metal stress: Comparative analysis of glutathione-related and other defense gene deletions.

Genes Cells 2016 Jun 23;21(6):530-42. Epub 2016 Mar 23.

G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University (OIST), Onna, Okinawa, Japan.

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http://dx.doi.org/10.1111/gtc.12359DOI Listing
June 2016

Unexpected similarities between the Schizosaccharomyces and human blood metabolomes, and novel human metabolites.

Mol Biosyst 2014 Oct;10(10):2538-51

Graduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto, Japan.

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http://dx.doi.org/10.1039/c4mb00346bDOI Listing
October 2014

Metabolomic analysis of fission yeast at the onset of nitrogen starvation.

Metabolites 2013 Dec 13;3(4):1118-29. Epub 2013 Dec 13.

G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University (OIST), 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan.

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http://dx.doi.org/10.3390/metabo3041118DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3937841PMC
December 2013

Impaired coenzyme A synthesis in fission yeast causes defective mitosis, quiescence-exit failure, histone hypoacetylation and fragile DNA.

Open Biol 2012 Sep;2(9):120117

Okinawa Institute of Science and Technology Graduate University, Tancha 1919-1, Onna, Okinawa 904-0495, Japan.

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http://dx.doi.org/10.1098/rsob.120117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3472395PMC
September 2012

Highly accurate chemical formula prediction tool utilizing high-resolution mass spectra, MS/MS fragmentation, heuristic rules, and isotope pattern matching.

Anal Chem 2012 May 26;84(10):4396-403. Epub 2012 Apr 26.

G0 Cell Unit, Okinawa Institute of Science and Technology, Graduate University, Onna, Okinawa, Japan.

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http://dx.doi.org/10.1021/ac3000418DOI Listing
May 2012

Metabolic profiling of the fission yeast S. pombe: quantification of compounds under different temperatures and genetic perturbation.

Mol Biosyst 2010 Jan 4;6(1):182-98. Epub 2009 Sep 4.

The G0 Cell Unit, Okinawa Institute of Science and Technology Promotion Corporation, Suzaki 12-22, Uruma, Okinawa 904-2234, Japan.

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http://dx.doi.org/10.1039/b908784bDOI Listing
January 2010