Todd E Scheetz

Todd E Scheetz

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Todd E Scheetz

Todd E Scheetz

Publications by authors named "Todd E Scheetz"

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Single-cell transcriptomics of the human retinal pigment epithelium and choroid in health and macular degeneration.

Proc Natl Acad Sci U S A 2019 Nov 11. Epub 2019 Nov 11.

Department of Ophthalmology and Visual Sciences, The University of Iowa Carver College of Medicine, Iowa City, IA 52242;

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http://dx.doi.org/10.1073/pnas.1914143116DOI Listing
November 2019

Correlation between electroretinography, foveal anatomy and visual acuity in albinism.

Doc Ophthalmol 2019 08 29;139(1):21-32. Epub 2019 Mar 29.

University of Iowa Institute for Vision Research, University of Iowa, 200 Hawkins Drive, Iowa City, IA, 52242, USA.

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http://dx.doi.org/10.1007/s10633-019-09692-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6754264PMC
August 2019

Analysis of 14-3-3 isoforms expressed in photoreceptors.

Exp Eye Res 2018 05 24;170:108-116. Epub 2018 Feb 24.

Department of Biochemistry, University of Iowa, Iowa City, IA 52242, USA; Department of Ophthalmology & Visual Sciences and Institute for Vision Research, University of Iowa, Iowa City, IA 52242, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00144835173079
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http://dx.doi.org/10.1016/j.exer.2018.02.022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5924652PMC
May 2018

Evaluation of sFLT1 protein levels in human eyes with the FLT1 rs9943922 polymorphism.

Ophthalmic Genet 2018 Jan-Feb;39(1):68-72. Epub 2017 Sep 26.

a The Stephen A. Wynn Institute for Vision Research and the Department of Ophthalmology and Visual Sciences , The University of Iowa , Iowa City , Iowa , USA.

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http://dx.doi.org/10.1080/13816810.2017.1369550DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5751420PMC
March 2018

LADD syndrome with glaucoma is caused by a novel gene.

Mol Vis 2017 30;23:179-184. Epub 2017 Mar 30.

Department of Ophthalmology, Carver College of Medicine, University of Iowa, Iowa City, IA; Stephen A. Wynn Institute for Vision Research, University of Iowa, Iowa City, IA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5373035PMC
February 2018

Clinically Focused Molecular Investigation of 1000 Consecutive Families with Inherited Retinal Disease.

Ophthalmology 2017 09 27;124(9):1314-1331. Epub 2017 May 27.

Department of Ophthalmology and Visual Sciences, University of Iowa Carver College of Medicine, Iowa City, Iowa; Stephen A. Wynn Institute for Vision Research, the University of Iowa, Iowa City, Iowa.

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http://dx.doi.org/10.1016/j.ophtha.2017.04.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5565704PMC
September 2017

SQSTM1 Mutations and Glaucoma.

PLoS One 2016 8;11(6):e0156001. Epub 2016 Jun 8.

Department of Ophthalmology and Visual Sciences, Carver College of Medicine, University of Iowa, Iowa City, Iowa, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0156001PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4898711PMC
July 2017

Glaucoma Risk Alleles in the Ocular Hypertension Treatment Study.

Ophthalmology 2016 12 1;123(12):2527-2536. Epub 2016 Oct 1.

Department Ophthalmology and Visual Sciences, University of Iowa, Iowa City, Iowa; Stephen A. Wynn Institute for Vision Research, University of Iowa, Iowa City, Iowa. Electronic address:

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http://dx.doi.org/10.1016/j.ophtha.2016.08.036DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5121091PMC
December 2016

A Homozygous Nme7 Mutation Is Associated with Situs Inversus Totalis.

Hum Mutat 2016 08 9;37(8):727-31. Epub 2016 May 9.

Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev, Beer Sheva, Israel.

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http://dx.doi.org/10.1002/humu.22998DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6066188PMC
August 2016

Tank-Binding Kinase 1 () Gene and Open-Angle Glaucomas (An American Ophthalmological Society Thesis).

Trans Am Ophthalmol Soc 2016 Aug;114:T6

Department of Ophthalmology and Visual Sciences, Carver College of Medicine, University of Iowa, Iowa City, Iowa (Dr Fingert, Dr Scheetz, Dr Kwon, Dr Alward); the Stephen A. Wynn Institute for Vision Research, University of Iowa, Iowa City, Iowa (Dr Fingert, Dr Scheetz, Dr Kwon, Dr Alward); the Departments of Ophthalmology and International Health, School of Medicine and the Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland (Dr Robin); the Department of Ophthalmology, University of Maryland, Baltimore, Maryland (Dr Robin); Columbia University Medical Center, New York, New York (Dr Liebmann); the Einhorn Clinical Research Center, New York Eye and Ear Infirmary of Mount Sinai, New York, New York (Dr Ritch).

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5113957PMC
August 2016

Novel TMEM98 mutations in pedigrees with autosomal dominant nanophthalmos.

Mol Vis 2015 1;21:1017-23. Epub 2015 Sep 1.

Department of Ophthalmology and Visual Sciences, Carver College of Medicine, University of Iowa ; The Wynn Institute for Vision Research, University of Iowa.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4556162PMC
June 2016

RetFM-J, an ImageJ-based module for automated counting and quantifying features of nuclei in retinal whole-mounts.

Exp Eye Res 2016 05 14;146:386-92. Epub 2015 Aug 14.

VA Center for the Prevention and Treatment of Visual Loss, Iowa City VA Health Care System, Iowa City, IA, USA; Department of Molecular Physiology and Biophysics, University of Iowa, Iowa City, IA 52242, USA; Department of Ophthalmology and Visual Sciences, University of Iowa, Iowa City, IA 52242, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00144835150025
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http://dx.doi.org/10.1016/j.exer.2015.07.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4753132PMC
May 2016

Quantitative measurement of retinal ganglion cell populations via histology-based random forest classification.

Exp Eye Res 2016 05 22;146:370-85. Epub 2015 Oct 22.

VA Center for the Prevention and Treatment of Visual Loss, Iowa City VA Health Care System, Iowa City, IA, USA; Department of Molecular Physiology and Biophysics, University of Iowa, Iowa City, IA 52242, USA; Department of Ophthalmology and Visual Sciences, University of Iowa, Iowa City, IA 52242, USA. Electronic address:

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http://dx.doi.org/10.1016/j.exer.2015.09.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4841761PMC
May 2016

Audioprofile Surfaces: The 21st Century Audiogram.

Ann Otol Rhinol Laryngol 2016 May 3;125(5):361-8. Epub 2015 Nov 3.

Department of Electrical and Computer Engineering, University of Iowa, Iowa City, Iowa, USA Center for Bioinformatics and Computational Biology, University of Iowa, Iowa City, Iowa, USA Department of Ophthalmology and Visual Sciences, University of Iowa, Iowa City, Iowa, USA.

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http://dx.doi.org/10.1177/0003489415614863DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4821702PMC
May 2016

Automated Axon Counting in Rodent Optic Nerve Sections with AxonJ.

Sci Rep 2016 05 26;6:26559. Epub 2016 May 26.

Stephen A. Wynn Institute for Vision Research, University of Iowa, Iowa City, IA 52242, USA.

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http://dx.doi.org/10.1038/srep26559DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4881014PMC
May 2016

Molecular response of chorioretinal endothelial cells to complement injury: implications for macular degeneration.

J Pathol 2016 Feb 24;238(3):446-56. Epub 2015 Dec 24.

Stephen A Wynn Institute for Vision Research and Department of Ophthalmology and Visual Sciences, University of Iowa, Iowa City, IA, USA.

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http://dx.doi.org/10.1002/path.4669DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4900182PMC
February 2016

Stereo Photo Measured ONH Shape Predicts Development of POAG in Subjects With Ocular Hypertension.

Invest Ophthalmol Vis Sci 2015 Jul;56(8):4470-9

Stephen A. Wynn Institute for Vision Research, University of Iowa, Iowa City, Iowa, United States 2Department of Biomedical Engineering, University of Iowa, Iowa City, Iowa, United States 4Department of Ophthalmology and Visual Sciences, University of Iow.

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http://dx.doi.org/10.1167/iovs.14-16142DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4509059PMC
July 2015

Characterization of Cav1.4 complexes (α11.4, β2, and α2δ4) in HEK293T cells and in the retina.

J Biol Chem 2015 Jan 2;290(3):1505-21. Epub 2014 Dec 2.

the Department of Physiology and Biophysics, University of Washington, Seattle, Washington 98195

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http://dx.doi.org/10.1074/jbc.M114.607465DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4340398PMC
January 2015

Cordova: web-based management of genetic variation data.

Bioinformatics 2014 Dec 14;30(23):3438-9. Epub 2014 Aug 14.

Department of Biomedical Engineering, Department of Ophthalmology and Visual Sciences, Department of Electrical and Computer Engineering, Department of Otolaryngology-Head & Neck Surgery, Carver College of Medicine, Department of Molecular Physiology & Biophysics, Carver College of Medicine, Interdisciplinary Graduate Program in Genetics and Iowa Institute for Human Genetics, Carver College of Medicine, The University of Iowa, Iowa City, IA 52242, USA.

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http://bioinformatics.oxfordjournals.org/content/early/2014/
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http://bioinformatics.oxfordjournals.org/cgi/doi/10.1093/bio
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http://dx.doi.org/10.1093/bioinformatics/btu539DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4296146PMC
December 2014

Transcriptomic analysis across nasal, temporal, and macular regions of human neural retina and RPE/choroid by RNA-Seq.

Exp Eye Res 2014 Dec 5;129:93-106. Epub 2014 Nov 5.

Stephen A. Wynn Institute for Vision Research, The University of Iowa, Iowa City, IA, USA; Department of Ophthalmology and Visual Sciences, Carver College of Medicine, The University of Iowa, Iowa City, IA, USA; Department of Biomedical Engineering, College of Engineering, The University of Iowa, Iowa City, IA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.exer.2014.11.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4259842PMC
December 2014

Sequencing methods and datasets to improve functional interpretation of sleeping beauty mutagenesis screens.

BMC Genomics 2014 Dec 19;15:1150. Epub 2014 Dec 19.

Department of Anatomy and Cell Biology, University of Iowa, Iowa City IA 52242, USA.

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http://dx.doi.org/10.1186/1471-2164-15-1150DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4378557PMC
December 2014

Utilizing ethnic-specific differences in minor allele frequency to recategorize reported pathogenic deafness variants.

Am J Hum Genet 2014 Oct 25;95(4):445-53. Epub 2014 Sep 25.

Molecular Otolaryngology & Renal Research Labs, Department of Otolaryngology-Head and Neck Surgery, University of Iowa Carver College of Medicine, Iowa City, IA 52242, USA; Interdepartmental PhD Program in Genetics, University of Iowa, Iowa City, IA 52242, USA; Department of Molecular Physiology & Biophysics, University of Iowa Carver College of Medicine, Iowa City, IA 52242, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2014.09.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4185121PMC
October 2014

Altered gene expression in dry age-related macular degeneration suggests early loss of choroidal endothelial cells.

Mol Vis 2013 16;19:2274-97. Epub 2013 Nov 16.

Department of Ophthalmology and Visual Sciences, The University of Iowa, Iowa City, IA ; Stephen A. Wynn Institute for Vision Research, The University of Iowa, Iowa City, IA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3834599PMC
March 2014

An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge.

Authors:
Catherine A Brownstein Alan H Beggs Nils Homer Barry Merriman Timothy W Yu Katherine C Flannery Elizabeth T DeChene Meghan C Towne Sarah K Savage Emily N Price Ingrid A Holm Lovelace J Luquette Elaine Lyon Joseph Majzoub Peter Neupert David McCallie Peter Szolovits Huntington F Willard Nancy J Mendelsohn Renee Temme Richard S Finkel Sabrina W Yum Livija Medne Shamil R Sunyaev Ivan Adzhubey Christopher A Cassa Paul I W de Bakker Hatice Duzkale Piotr Dworzyński William Fairbrother Laurent Francioli Birgit H Funke Monica A Giovanni Robert E Handsaker Kasper Lage Matthew S Lebo Monkol Lek Ignaty Leshchiner Daniel G MacArthur Heather M McLaughlin Michael F Murray Tune H Pers Paz P Polak Soumya Raychaudhuri Heidi L Rehm Rachel Soemedi Nathan O Stitziel Sara Vestecka Jochen Supper Claudia Gugenmus Bernward Klocke Alexander Hahn Max Schubach Mortiz Menzel Saskia Biskup Peter Freisinger Mario Deng Martin Braun Sven Perner Richard J H Smith Janeen L Andorf Jian Huang Kelli Ryckman Val C Sheffield Edwin M Stone Thomas Bair E Ann Black-Ziegelbein Terry A Braun Benjamin Darbro Adam P DeLuca Diana L Kolbe Todd E Scheetz Aiden E Shearer Rama Sompallae Kai Wang Alexander G Bassuk Erik Edens Katherine Mathews Steven A Moore Oleg A Shchelochkov Pamela Trapane Aaron Bossler Colleen A Campbell Jonathan W Heusel Anne Kwitek Tara Maga Karin Panzer Thomas Wassink Douglas Van Daele Hela Azaiez Kevin Booth Nic Meyer Michael M Segal Marc S Williams Gerard Tromp Peter White Donald Corsmeier Sara Fitzgerald-Butt Gail Herman Devon Lamb-Thrush Kim L McBride David Newsom Christopher R Pierson Alexander T Rakowsky Aleš Maver Luca Lovrečić Anja Palandačić Borut Peterlin Ali Torkamani Anna Wedell Mikael Huss Andrey Alexeyenko Jessica M Lindvall Måns Magnusson Daniel Nilsson Henrik Stranneheim Fulya Taylan Christian Gilissen Alexander Hoischen Bregje van Bon Helger Yntema Marcel Nelen Weidong Zhang Jason Sager Lu Zhang Kathryn Blair Deniz Kural Michael Cariaso Greg G Lennon Asif Javed Saloni Agrawal Pauline C Ng Komal S Sandhu Shuba Krishna Vamsi Veeramachaneni Ofer Isakov Eran Halperin Eitan Friedman Noam Shomron Gustavo Glusman Jared C Roach Juan Caballero Hannah C Cox Denise Mauldin Seth A Ament Lee Rowen Daniel R Richards F Anthony San Lucas Manuel L Gonzalez-Garay C Thomas Caskey Yu Bai Ying Huang Fang Fang Yan Zhang Zhengyuan Wang Jorge Barrera Juan M Garcia-Lobo Domingo González-Lamuño Javier Llorca Maria C Rodriguez Ignacio Varela Martin G Reese Francisco M De La Vega Edward Kiruluta Michele Cargill Reece K Hart Jon M Sorenson Gholson J Lyon David A Stevenson Bruce E Bray Barry M Moore Karen Eilbeck Mark Yandell Hongyu Zhao Lin Hou Xiaowei Chen Xiting Yan Mengjie Chen Cong Li Can Yang Murat Gunel Peining Li Yong Kong Austin C Alexander Zayed I Albertyn Kym M Boycott Dennis E Bulman Paul M K Gordon A Micheil Innes Bartha M Knoppers Jacek Majewski Christian R Marshall Jillian S Parboosingh Sarah L Sawyer Mark E Samuels Jeremy Schwartzentruber Isaac S Kohane David M Margulies

Genome Biol 2014 Mar 25;15(3):R53. Epub 2014 Mar 25.

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http://dx.doi.org/10.1186/gb-2014-15-3-r53DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4073084PMC
March 2014

Selection of Phototransduction Genes in Homo sapiens.

Invest Ophthalmol Vis Sci 2013 Aug 13;54(8):5489-96. Epub 2013 Aug 13.

Institute for Vision Research, University of Iowa, Iowa City, Iowa, USA.

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http://dx.doi.org/10.1167/iovs.12-11454DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3743458PMC
August 2013

Swarm rat chondrosarcoma cells as an in vivo model: lung colonization and effects of tissue environment on tumor growth.

Iowa Orthop J 2012 ;32:46-53

Department of Orthopaedic Surgery and Rehabilitation University of Iowa 200 Hawkins Drive, Iowa City, IA 52242, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3565414PMC
July 2013

Computational identification of operon-like transcriptional loci in eukaryotes.

Comput Biol Med 2013 Jul 28;43(6):738-43. Epub 2013 Mar 28.

Center for Bioinformatics and Computational Biology, University of Iowa, Iowa City, IA 52242, USA.

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http://biology4.wustl.edu/faculty/ben-shahar/PDFs/Nannapanen
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http://linkinghub.elsevier.com/retrieve/pii/S001048251300075
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http://dx.doi.org/10.1016/j.compbiomed.2013.03.004DOI Listing
July 2013

Prioritization of retinal disease genes: an integrative approach.

Hum Mutat 2013 Jun 12;34(6):853-9. Epub 2013 Apr 12.

Department of Biomedical Engineering, University of Iowa, Iowa City, Iowa 52242, USA.

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http://dx.doi.org/10.1002/humu.22317DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4509594PMC
June 2013

Using the phenome and genome to improve genetic diagnosis for deafness.

Otolaryngol Head Neck Surg 2012 Nov 11;147(5):975-7. Epub 2012 Jul 11.

Department of Otolaryngology-Head and Neck Surgery, University of Iowa Hospitals and Clinics, Iowa City, IA, USA.

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http://dx.doi.org/10.1177/0194599812454271DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3694170PMC
November 2012

Analysis of ASB10 variants in open angle glaucoma.

Hum Mol Genet 2012 Oct 13;21(20):4543-8. Epub 2012 Jul 13.

Department of Ophthalmology and Visual Sciences, Carver College of Medicine, University of Iowa, Iowa City, IA 52242, USA.

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http://hmg.oxfordjournals.org/content/21/20/4543.full.pdf
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http://www.hmg.oxfordjournals.org/cgi/doi/10.1093/hmg/dds288
Publisher Site
http://dx.doi.org/10.1093/hmg/dds288DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3459468PMC
October 2012

A Hyperactive Transposase Promotes Persistent Gene Transfer of a piggyBac DNA Transposon.

Mol Ther Nucleic Acids 2012 Oct 16;1:e50. Epub 2012 Oct 16.

1] Interdisciplinary Graduate Program in Genetics, Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA [2] Center for Gene Therapy of Cystic Fibrosis and Other Genetic Diseases, Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA [3] Department of Pediatrics, Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA.

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http://dx.doi.org/10.1038/mtna.2012.12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3499692PMC
October 2012

Novel molecular and computational methods improve the accuracy of insertion site analysis in Sleeping Beauty-induced tumors.

PLoS One 2011 13;6(9):e24668. Epub 2011 Sep 13.

Center for Bioinformatics and Computational Biology, Roy J. and Lucille A. Carver College of Medicine, University of Iowa, Iowa City, Iowa, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0024668PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3172244PMC
February 2012

Microarray mRNA expression profiling to study cystic fibrosis.

Methods Mol Biol 2011 ;742:193-212

Interdisciplinary Program in Genetics, Department of Pediatrics, University of Iowa, Iowa City, IA, USA.

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http://dx.doi.org/10.1007/978-1-61779-120-8_12DOI Listing
September 2011

Copy number variations on chromosome 12q14 in patients with normal tension glaucoma.

Hum Mol Genet 2011 Jun 29;20(12):2482-94. Epub 2011 Mar 29.

Department of Ophthalmology and Visual Sciences, Carver College of Medicine, University of Iowa, Iowa City, IA 52242, USA.

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http://dx.doi.org/10.1093/hmg/ddr123DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3098731PMC
June 2011

Computational quantification of complex fundus phenotypes in age-related macular degeneration and Stargardt disease.

Invest Ophthalmol Vis Sci 2011 May 6;52(6):2976-81. Epub 2011 May 6.

Department of Ophthalmology and Visual Sciences, University of Iowa Hospitals and Clinics, Iowa City, Iowa, USA.

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http://dx.doi.org/10.1167/iovs.10-6232DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3109011PMC
May 2011

Comprehensive genetic testing for hereditary hearing loss using massively parallel sequencing.

Proc Natl Acad Sci U S A 2010 Dec 15;107(49):21104-9. Epub 2010 Nov 15.

Department of Otolaryngology, Head and Neck Surgery, University of Iowa, Iowa City, IA 52242, USA.

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http://www.pnas.org/cgi/doi/10.1073/pnas.1012989107
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http://dx.doi.org/10.1073/pnas.1012989107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3000272PMC
December 2010

Automated quantification of inherited phenotypes from color images: a twin study of the variability of optic nerve head shape.

Invest Ophthalmol Vis Sci 2010 Nov 26;51(11):5870-7. Epub 2010 May 26.

Department of Ophthalmology and Visual Sciences, University of Iowa Hospitals and Clinics, Iowa City, Iowa 52242, USA.

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http://iovs.arvojournals.org/article.aspx?doi=10.1167/iovs.1
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http://dx.doi.org/10.1167/iovs.10-5527DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3061515PMC
November 2010

A modified sleeping beauty transposon system that can be used to model a wide variety of human cancers in mice.

Cancer Res 2009 Oct 6;69(20):8150-6. Epub 2009 Oct 6.

Department of Anatomy and Cell Biology, Center for Bioinformatics, Computational Biology and Biomedical Engineering, Roy J and Lucille A Carver College of Medicine, University of Iowa, Iowa City, Iowa 52242, USA.

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http://dx.doi.org/10.1158/0008-5472.CAN-09-1135DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3700628PMC
October 2009

Differential gene expression in human conducting airway surface epithelia and submucosal glands.

Am J Respir Cell Mol Biol 2009 Feb 14;40(2):189-99. Epub 2008 Aug 14.

Department of Pediatrics, University of Iowa, Iowa City, IA 52242, USA.

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http://dx.doi.org/10.1165/rcmb.2008-0240OCDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2633141PMC
February 2009

Multi-granularity Parallel Computing in a Genome-Scale Molecular Evolution Application.

J Supercomput 2009 Jan;5698:49-59

Coordinated Laboratory for Computational Genomics, University of Iowa, Iowa City, IA 52242 USA.

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http://dx.doi.org/10.1007/978-3-642-03275-2_6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3155254PMC
January 2009

A knowledge-based approach to predict intragenic deletions or duplications.

Bioinformatics 2008 Sep 21;24(18):1975-9. Epub 2008 Jul 21.

Department of Biomedical Engineering, Center for Bioinformatics and Computational Biology, University of Iowa, Iowa, USA.

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http://dx.doi.org/10.1093/bioinformatics/btn370DOI Listing
September 2008

Association of a novel mutation in the retinol dehydrogenase 12 (RDH12) gene with autosomal dominant retinitis pigmentosa.

Arch Ophthalmol 2008 Sep;126(9):1301-7

Department of Ophthalmology and Visual Sciences, The University of Iowa Carver College of Medicine, Iowa City, IA 52242, USA.

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http://dx.doi.org/10.1001/archopht.126.9.1301DOI Listing
September 2008

First exons and introns--a survey of GC content and gene structure in the human genome.

In Silico Biol 2006 ;6(3):237-42

Center for Bioinformatics and Computational Biology, The University of Iowa, Iowa City, IA 52242, USA.

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February 2007

Eukaryotic operon-like transcription of functionally related genes in Drosophila.

Proc Natl Acad Sci U S A 2007 Jan 26;104(1):222-7. Epub 2006 Dec 26.

Howard Hughes Medical Institute, and Department of Internal Medicine, Roy J. and Lucille A. Carver College of Medicine Center for Bioinformatics and Computational Biology, University of Iowa, Iowa City, IA 52242, USA.

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http://dx.doi.org/10.1073/pnas.0609683104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1749324PMC
January 2007

Complement factor H polymorphism p.Tyr402His and cuticular Drusen.

Arch Ophthalmol 2007 Jan;125(1):93-7

Department of Ophthalmology and Visual Sciences, University of Iowa, Iowa City, USA.

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http://dx.doi.org/10.1001/archopht.125.1.93DOI Listing
January 2007

Ethnic variation in AMD-associated complement factor H polymorphism p.Tyr402His.

Hum Mutat 2006 Sep;27(9):921-5

Department of Ophthalmology and Visual Sciences, Carver College of Medicine, University of Iowa, Iowa City 52242, USA.

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http://dx.doi.org/10.1002/humu.20359DOI Listing
September 2006

Integration site choice of a feline immunodeficiency virus vector.

J Virol 2006 Sep;80(17):8820-3

Program in Gene Therapy, Department of Pediatrics, University of Iowa, Iowa City, 52242, 52242, USA.

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http://dx.doi.org/10.1128/JVI.00719-06DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1563849PMC
September 2006

Regulation of gene expression in the mammalian eye and its relevance to eye disease.

Proc Natl Acad Sci U S A 2006 Sep 18;103(39):14429-34. Epub 2006 Sep 18.

Departments of Ophthalmology and Biomedical Engineering, Howard Hughes Medical Institute, University of Iowa, Iowa City, IA 52242, USA.

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http://dx.doi.org/10.1073/pnas.0602562103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1636701PMC
September 2006

Genome-wide identification of pseudogenes capable of disease-causing gene conversion.

Hum Mutat 2006 Jun;27(6):545-52

Coordinated Laboratory for Computational Genomics, The University of Iowa, Iowa City, Iowa 52240, USA.

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http://dx.doi.org/10.1002/humu.20335DOI Listing
June 2006

Prioritizing regions of candidate genes for efficient mutation screening.

Hum Mutat 2006 Feb;27(2):195-200

Department of Biomedical Engineering, University of Iowa, Iowa City, IA 52242, USA.

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http://doi.wiley.com/10.1002/humu.20247
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http://dx.doi.org/10.1002/humu.20247DOI Listing
February 2006

Identifying components of the NF-kappaB pathway in the beneficial Euprymna scolopes-Vibrio fischeri light organ symbiosis.

Appl Environ Microbiol 2005 Nov;71(11):6934-46

Department of Medical Microbiology and Immunology, University of Wisconsin, 1300 University Ave., Madison, WI 53706, USA.

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http://dx.doi.org/10.1128/AEM.71.11.6934-6946.2005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1287678PMC
November 2005

CFTR DeltaF508 mutation has minimal effect on the gene expression profile of differentiated human airway epithelia.

Am J Physiol Lung Cell Mol Physiol 2005 Oct 3;289(4):L545-53. Epub 2005 Jun 3.

Department of Internal Medicine, University of Iowa Roy J. and Lucille A. Carver College of Medicine, Iowa City, IA 52242, USA.

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http://dx.doi.org/10.1152/ajplung.00065.2005DOI Listing
October 2005

Insights into a dinoflagellate genome through expressed sequence tag analysis.

BMC Genomics 2005 May 29;6:80. Epub 2005 May 29.

Department of Biological Sciences and Roy J, Carver Center for Comparative Genomics, University of Iowa, Iowa City, IA 52242, USA.

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http://dx.doi.org/10.1186/1471-2164-6-80DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1173104PMC
May 2005

Isolation and characterization of autotrophic, hydrogen-utilizing, perchlorate-reducing bacteria.

Appl Microbiol Biotechnol 2005 Apr 4;67(2):261-8. Epub 2004 Sep 4.

Department of Civil and Environmental Engineering, The University of Iowa, Iowa City, IA 52242, USA.

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http://link.springer.com/10.1007/s00253-004-1725-0
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http://dx.doi.org/10.1007/s00253-004-1725-0DOI Listing
April 2005

The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

Authors:
Daniela S Gerhard Lukas Wagner Elise A Feingold Carolyn M Shenmen Lynette H Grouse Greg Schuler Steven L Klein Susan Old Rebekah Rasooly Peter Good Mark Guyer Allison M Peck Jeffery G Derge David Lipman Francis S Collins Wonhee Jang Steven Sherry Mike Feolo Leonie Misquitta Eduardo Lee Kirill Rotmistrovsky Susan F Greenhut Carl F Schaefer Kenneth Buetow Tom I Bonner David Haussler Jim Kent Mark Kiekhaus Terry Furey Michael Brent Christa Prange Kirsten Schreiber Nicole Shapiro Narayan K Bhat Ralph F Hopkins Florence Hsie Tom Driscoll M Bento Soares Tom L Casavant Todd E Scheetz Michael J Brown-stein Ted B Usdin Shiraki Toshiyuki Piero Carninci Yulan Piao Dawood B Dudekula Minoru S H Ko Koichi Kawakami Yutaka Suzuki Sumio Sugano C E Gruber M R Smith Blake Simmons Troy Moore Richard Waterman Stephen L Johnson Yijun Ruan Chia Lin Wei S Mathavan Preethi H Gunaratne Jiaqian Wu Angela M Garcia Stephen W Hulyk Edwin Fuh Ye Yuan Anna Sneed Carla Kowis Anne Hodgson Donna M Muzny John McPherson Richard A Gibbs Jessica Fahey Erin Helton Mark Ketteman Anuradha Madan Stephanie Rodrigues Amy Sanchez Michelle Whiting Anup Madari Alice C Young Keith D Wetherby Steven J Granite Peggy N Kwong Charles P Brinkley Russell L Pearson Gerard G Bouffard Robert W Blakesly Eric D Green Mark C Dickson Alex C Rodriguez Jane Grimwood Jeremy Schmutz Richard M Myers Yaron S N Butterfield Malachi Griffith Obi L Griffith Martin I Krzywinski Nancy Liao Ryan Morin Ryan Morrin Diana Palmquist Anca S Petrescu Ursula Skalska Duane E Smailus Jeff M Stott Angelique Schnerch Jacqueline E Schein Steven J M Jones Robert A Holt Agnes Baross Marco A Marra Sandra Clifton Kathryn A Makowski Stephanie Bosak Joel Malek

Genome Res 2004 Oct;14(10B):2121-7

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http://dx.doi.org/10.1101/gr.2596504DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC528928PMC
October 2004

Gene expression profiling of potential PPARgamma target genes in mouse aorta.

Physiol Genomics 2004 Jun 17;18(1):33-42. Epub 2004 Jun 17.

Department of Internal Medicine, University of Iowa College of Medicine, Iowa City, Iowa 52242, USA.

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http://www.physiology.org/doi/10.1152/physiolgenomics.00027.
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June 2004

A comprehensive nonredundant expressed sequence tag collection for the developing Rattus norvegicus heart.

Physiol Genomics 2004 Apr 13;17(2):245-52. Epub 2004 Apr 13.

Department of Pediatrics and Interdepartmental-Genetics Graduate Program, The University of Iowa, Iowa City, Iowa 52242, USA.

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http://dx.doi.org/10.1152/physiolgenomics.00186.2003DOI Listing
April 2004

Large-scale gene discovery in human airway epithelia reveals novel transcripts.

Physiol Genomics 2004 Mar 12;17(1):69-77. Epub 2004 Mar 12.

Department of Pediatrics, Roy J. and Lucille A. Carver College of Medicine, University of Iowa, Iowa City, Iowa 52242, USA.

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http://dx.doi.org/10.1152/physiolgenomics.00188.2003DOI Listing
March 2004

Migration of the plastid genome to the nucleus in a peridinin dinoflagellate.

Curr Biol 2004 Feb;14(3):213-8

Department of Biological Sciences and Center for Comparative Genomics, The University of Iowa, Iowa City, IA 52242, USA.

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http://dx.doi.org/10.1016/j.cub.2004.01.032DOI Listing
February 2004

ESTprep: preprocessing cDNA sequence reads.

Bioinformatics 2003 Jul;19(11):1318-24

Center for Bioinformatics and Computational Biology, The University of Iowa, Iowa City, IA 52242, USA.

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http://dx.doi.org/10.1093/bioinformatics/btg159DOI Listing
July 2003