Publications by authors named "Tobias Knaute"

14Publications

New Approaches for Absolute Quantification of Stable-Isotope-Labeled Peptide Standards for Targeted Proteomics Based on a UV Active Tag.

Authors:
Karsten Schnatbaum Victor Solis-Mezarino Daniil Pokrovsky Frederike Schäfer Dennis Nagl Lars Hornberger Johannes Zerweck Tobias Knaute Julia Avramova-Nehmer Mike Schutkowski Veit Hornung Holger Wenschuh Moritz Carl Völker-Albert Axel Imhof Ulf Reimer

Proteomics 2020 05 20;20(10):e2000007. Epub 2020 May 20.

JPT Peptide Technologies GmbH, Volmerstrasse 5, Berlin, 12489, Germany.

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May 2020

Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning.

Authors:
Siegfried Gessulat Tobias Schmidt Daniel Paul Zolg Patroklos Samaras Karsten Schnatbaum Johannes Zerweck Tobias Knaute Julia Rechenberger Bernard Delanghe Andreas Huhmer Ulf Reimer Hans-Christian Ehrlich Stephan Aiche Bernhard Kuster Mathias Wilhelm

Nat Methods 2019 06 27;16(6):509-518. Epub 2019 May 27.

Chair of Proteomics and Bioanalytics, Technical University of Munich, Freising, Germany.

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June 2019

ProteomeTools: Systematic Characterization of 21 Post-translational Protein Modifications by Liquid Chromatography Tandem Mass Spectrometry (LC-MS/MS) Using Synthetic Peptides.

Authors:
Daniel Paul Zolg Mathias Wilhelm Tobias Schmidt Guillaume Médard Johannes Zerweck Tobias Knaute Holger Wenschuh Ulf Reimer Karsten Schnatbaum Bernhard Kuster

Mol Cell Proteomics 2018 09 29;17(9):1850-1863. Epub 2018 May 29.

From the ‡Chair of Proteomics and Bioanalytics, Technical University of Munich, Freising, Germany;

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September 2018

PROCAL: A Set of 40 Peptide Standards for Retention Time Indexing, Column Performance Monitoring, and Collision Energy Calibration.

Authors:
Daniel Paul Zolg Mathias Wilhelm Peng Yu Tobias Knaute Johannes Zerweck Holger Wenschuh Ulf Reimer Karsten Schnatbaum Bernhard Kuster

Proteomics 2017 Nov 24;17(21). Epub 2017 Oct 24.

Chair of Proteomics and Bioanalytics, Technical University of Munich, Freising, Germany.

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November 2017

Building ProteomeTools based on a complete synthetic human proteome.

Authors:
Daniel P Zolg Mathias Wilhelm Karsten Schnatbaum Johannes Zerweck Tobias Knaute Bernard Delanghe Derek J Bailey Siegfried Gessulat Hans-Christian Ehrlich Maximilian Weininger Peng Yu Judith Schlegl Karl Kramer Tobias Schmidt Ulrike Kusebauch Eric W Deutsch Ruedi Aebersold Robert L Moritz Holger Wenschuh Thomas Moehring Stephan Aiche Andreas Huhmer Ulf Reimer Bernhard Kuster

Nat Methods 2017 03 30;14(3):259-262. Epub 2017 Jan 30.

Chair of Proteomics and Bioanalytics, Technical University of Munich, Freising, Germany.

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March 2017

Antibody Responses After Analytic Treatment Interruption in Human Immunodeficiency Virus-1-Infected Individuals on Early Initiated Antiretroviral Therapy.

Authors:
Kathryn E Stephenson George H Neubauer Christine A Bricault Jennifer Shields Madeleine Bayne Ulf Reimer Nikolaus Pawlowski Tobias Knaute Johannes Zerweck Michael S Seaman Eric S Rosenberg Dan H Barouch

Open Forum Infect Dis 2016 Apr 19;3(2):ofw100. Epub 2016 May 19.

Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School; Ragon Institute of MGH, MIT and Harvard, Boston, Massachusetts.

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April 2016

Nuclear PKC-θ facilitates rapid transcriptional responses in human memory CD4+ T cells through p65 and H2B phosphorylation.

Authors:
Jasmine Li Kristine Hardy Chan Phetsouphanh Wen Juan Tu Elissa L Sutcliffe Robert McCuaig Christopher R Sutton Anjum Zafar C Mee Ling Munier John J Zaunders Yin Xu Angelo Theodoratos Abel Tan Pek Siew Lim Tobias Knaute Antonia Masch Johannes Zerweck Vedran Brezar Peter J Milburn Jenny Dunn Marco G Casarotto Stephen J Turner Nabila Seddiki Anthony D Kelleher Sudha Rao

J Cell Sci 2016 06 5;129(12):2448-61. Epub 2016 May 5.

Faculty of Education, Science, Technology & Mathematics, University of Canberra, Canberra, Australian Capital Territory 2617, Australia

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June 2016

PKC-Theta is a Novel SC35 Splicing Factor Regulator in Response to T Cell Activation.

Authors:
Robert Duncan McCuaig Jennifer Dunn Jasmine Li Antonia Masch Tobias Knaute Mike Schutkowski Johannes Zerweck Sudha Rao

Front Immunol 2015 5;6:562. Epub 2015 Nov 5.

Discipline of Biomedical Sciences, Faculty of Education, Science, Technology and Maths, University of Canberra , Canberra, ACT , Australia.

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November 2015

High-Throughput Microarray Incubations Using Multi-Well Chambers.

Authors:
Johannes Zerweck Ulf Reimer Janina Jansong Nikolaus Pawlowski Christoph Tersch Maren Eckey Tobias Knaute

Methods Mol Biol 2016 ;1352:19-26

JPT Peptide Technologies GmbH, Volmerstr. 5, 12489, Berlin, Germany.

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August 2016

Quantification of the epitope diversity of HIV-1-specific binding antibodies by peptide microarrays for global HIV-1 vaccine development.

Authors:
Kathryn E Stephenson George H Neubauer Ulf Reimer Nikolaus Pawlowski Tobias Knaute Johannes Zerweck Bette T Korber Dan H Barouch

J Immunol Methods 2015 Jan 15;416:105-23. Epub 2014 Nov 15.

Center for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States; Ragon Institute of MGH, MIT, and Harvard, Boston, MA, United States. Electronic address:

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January 2015

Relationships between IgE/IgG4 epitopes, structure and function in Anisakis simplex Ani s 5, a member of the SXP/RAL-2 protein family.

Authors:
María Flor García-Mayoral Miguel Angel Treviño Teresa Pérez-Piñar María Luisa Caballero Tobias Knaute Ana Umpierrez Marta Bruix Rosa Rodríguez-Pérez

PLoS Negl Trop Dis 2014 Mar 6;8(3):e2735. Epub 2014 Mar 6.

Carlos III Hospital, Immunology Department, Madrid, Spain.

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March 2014

Molecular basis for the binding polyspecificity of an anti-cholera toxin peptide 3 monoclonal antibody.

Authors:
Livia Otte Tobias Knaute Jens Schneider-Mergener Achim Kramer

J Mol Recognit 2006 Jan-Feb;19(1):49-59

Institut für Medizinische Immunologie, Charité-Universitätsmedizin Berlin, Berlin, Germany.

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February 2006

Combining SPOT synthesis and native peptide ligation to create large arrays of WW protein domains.

Authors:
Florian Toepert Tobias Knaute Stefan Guffler José R Pirés Thorsten Matzdorf Hartmut Oschkinat Jens Schneider-Mergener

Angew Chem Int Ed Engl 2003 Mar;42(10):1136-40

Institut für Medizinische Immunologie, Charité, Humboldt-Universität Berlin, Hessische Strasse 3-4, 10115 Berlin, Germany.

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March 2003

A complete substitutional analysis of VIP for better tumor imaging properties.

Authors:
Sarah Bhargava Kai Licha Tobias Knaute Bernd Ebert Andreas Becker Carsten Grötzinger Carsten Hessenius Bertram Wiedenmann Jens Schneider-Mergener Rudolf Volkmer-Engert

J Mol Recognit 2002 May-Jun;15(3):145-53

Institut für Medizinische Immunologie, Universitätsklinikum Charité, Schumannstrasse 20-21, 10098 Berlin, Germany.

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March 2003