Publications by authors named "Titia Sijen"

59Publications

mRNA profiling of mock casework samples: Results of a FoRNAP collaborative exercise.

Forensic Sci Int Genet 2020 Oct 26;50:102409. Epub 2020 Oct 26.

Zurich Institute of Forensic Medicine, University of Zurich, Switzerland. Electronic address:

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http://dx.doi.org/10.1016/j.fsigen.2020.102409DOI Listing
October 2020

Retraction.

Science 2020 Nov;370(6519):921

Frame Cancer Therapeutics, 1098XG Amsterdam, Netherlands.

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http://dx.doi.org/10.1126/science.abf4837DOI Listing
November 2020

Reducing the Number of Mismatches between Hairs and Buccal References When Analysing mtDNA Heteroplasmic Variation by Massively Parallel Sequencing.

Genes (Basel) 2020 Nov 16;11(11). Epub 2020 Nov 16.

Netherlands Forensic Institute, Division of Biological Traces, Laan van Ypenburg 6, 2497GB The Hague, The Netherlands.

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http://dx.doi.org/10.3390/genes11111355DOI Listing
November 2020

An assessment of the performance of the probabilistic genotyping software EuroForMix: Trends in likelihood ratios and analysis of Type I & II errors.

Forensic Sci Int Genet 2019 09 10;42:31-38. Epub 2019 Jun 10.

Netherlands Forensic Institute, Division of Biological Traces, Laan van Ypenburg 6, 2497GB The Hague, the Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.fsigen.2019.06.005DOI Listing
September 2019

Low-template methods yield limited extra information for PowerPlex® Fusion 6C profiling.

Leg Med (Tokyo) 2018 Jun 1;33:62-65. Epub 2018 Jun 1.

Netherlands Forensic Institute, Division of Biological Traces, Laan van Ypenburg 6, 2497GB The Hague, The Netherlands. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S13446223173041
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http://dx.doi.org/10.1016/j.legalmed.2018.06.001DOI Listing
June 2018

Extended specificity studies of mRNA assays used to infer human organ tissues and body fluids.

Electrophoresis 2017 12 20;38(24):3155-3160. Epub 2017 Sep 20.

Department of Biological Traces, Netherlands Forensic Institute, The Hague, The Netherlands.

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http://dx.doi.org/10.1002/elps.201700241DOI Listing
December 2017

Validation of SmartRank: A likelihood ratio software for searching national DNA databases with complex DNA profiles.

Forensic Sci Int Genet 2017 07 15;29:145-153. Epub 2017 Apr 15.

Division of Biological Traces, Netherlands Forensic Institute, P.O. Box 24044, 2490AA, The Hague, The Netherlands.

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http://dx.doi.org/10.1016/j.fsigen.2017.04.008DOI Listing
July 2017

FDSTools: A software package for analysis of massively parallel sequencing data with the ability to recognise and correct STR stutter and other PCR or sequencing noise.

Forensic Sci Int Genet 2017 03 27;27:27-40. Epub 2016 Nov 27.

Department of Human Genetics, Leiden University Medical Center, Leiden, 2300 RC, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.fsigen.2016.11.007DOI Listing
March 2017

Development of a control region-based mtDNA SNaPshot™ selection tool, integrated into a mini amplicon sequencing method.

Sci Justice 2016 Mar 25;56(2):96-103. Epub 2015 Nov 25.

Netherlands Forensic Institute, Laan van Ypenburg 6, The Hague, 2497GB, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.scijus.2015.11.003DOI Listing
March 2016

Advancing forensic RNA typing: On non-target secretions, a nasal mucosa marker, a differential co-extraction protocol and the sensitivity of DNA and RNA profiling.

Forensic Sci Int Genet 2016 Jan 7;20:119-129. Epub 2015 Nov 7.

Department of Human Biological Traces, Netherlands Forensic Institute, P.O. Box 24044, 2490 AA The Hague, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.fsigen.2015.10.011DOI Listing
January 2016

Evaluation of samples comprising minute amounts of DNA.

Sci Justice 2015 Sep 23;55(5):316-22. Epub 2015 May 23.

Department of Human Biological Traces, Netherlands Forensic Institute, P.O. Box 24044, 2490 AA The Hague, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.scijus.2015.05.002DOI Listing
September 2015

The effect of varying the number of contributors on likelihood ratios for complex DNA mixtures.

Forensic Sci Int Genet 2015 Nov 10;19:92-99. Epub 2015 Jul 10.

Department of Human Biological Traces, Netherlands Forensic Institute, P.O. Box 24044, 2490 AA The Hague, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.fsigen.2015.07.003DOI Listing
November 2015

Molecular approaches for forensic cell type identification: On mRNA, miRNA, DNA methylation and microbial markers.

Authors:
Titia Sijen

Forensic Sci Int Genet 2015 Sep 23;18:21-32. Epub 2014 Nov 23.

Department of Human Biological Traces, Netherlands Forensic Institute, PO Box 24044, 2490 AA The Hague, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.fsigen.2014.11.015DOI Listing
September 2015

Complex DNA mixture analysis in a forensic context: evaluating the probative value using a likelihood ratio model.

Forensic Sci Int Genet 2015 May 24;16:17-25. Epub 2014 Nov 24.

Department of Human Biological Traces, Netherlands Forensic Institute, P.O. Box 24044, 2490 AA The Hague, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.fsigen.2014.11.014DOI Listing
May 2015

Analysis of 36 Y-STR marker units including a concordance study among 2085 Dutch males.

Forensic Sci Int Genet 2015 Jan 23;14:174-81. Epub 2014 Oct 23.

Forensic Laboratory for DNA Research, Department of Human Genetics, Leiden University Medical Center, Postzone S-05-P, P.O. Box 9600, 2300 RC Leiden, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.fsigen.2014.10.012DOI Listing
January 2015

Toward male individualization with rapidly mutating y-chromosomal short tandem repeats.

Authors:
Kaye N Ballantyne Arwin Ralf Rachid Aboukhalid Niaz M Achakzai Maria J Anjos Qasim Ayub Jože Balažic Jack Ballantyne David J Ballard Burkhard Berger Cecilia Bobillo Mehdi Bouabdellah Helen Burri Tomas Capal Stefano Caratti Jorge Cárdenas François Cartault Elizeu F Carvalho Monica Carvalho Baowen Cheng Michael D Coble David Comas Daniel Corach Maria E D'Amato Sean Davison Peter de Knijff Maria Corazon A De Ungria Ronny Decorte Tadeusz Dobosz Berit M Dupuy Samir Elmrghni Mateusz Gliwiński Sara C Gomes Laurens Grol Cordula Haas Erin Hanson Jürgen Henke Lotte Henke Fabiola Herrera-Rodríguez Carolyn R Hill Gunilla Holmlund Katsuya Honda Uta-Dorothee Immel Shota Inokuchi Mark A Jobling Mahmoud Kaddura Jong S Kim Soon H Kim Wook Kim Turi E King Eva Klausriegler Daniel Kling Lejla Kovačević Leda Kovatsi Paweł Krajewski Sergey Kravchenko Maarten H D Larmuseau Eun Young Lee Ruediger Lessig Ludmila A Livshits Damir Marjanović Marek Minarik Natsuko Mizuno Helena Moreira Niels Morling Meeta Mukherjee Patrick Munier Javaregowda Nagaraju Franz Neuhuber Shengjie Nie Premlaphat Nilasitsataporn Takeki Nishi Hye H Oh Jill Olofsson Valerio Onofri Jukka U Palo Horolma Pamjav Walther Parson Michal Petlach Christopher Phillips Rafal Ploski Samayamantri P R Prasad Dragan Primorac Gludhug A Purnomo Josephine Purps Hector Rangel-Villalobos Krzysztof Rębała Budsaba Rerkamnuaychoke Danel Rey Gonzalez Carlo Robino Lutz Roewer Alexandra Rosa Antti Sajantila Andrea Sala Jazelyn M Salvador Paula Sanz Cornelia Schmitt Anil K Sharma Dayse A Silva Kyoung-Jin Shin Titia Sijen Miriam Sirker Daniela Siváková Vedrana Skaro Carlos Solano-Matamoros Luis Souto Vlastimil Stenzl Herawati Sudoyo Denise Syndercombe-Court Adriano Tagliabracci Duncan Taylor Andreas Tillmar Iosif S Tsybovsky Chris Tyler-Smith Kristiaan J van der Gaag Daniel Vanek Antónia Völgyi Denise Ward Patricia Willemse Eric P H Yap Rita Y Y Yong Irena Zupanič Pajnič Manfred Kayser

Hum Mutat 2014 Aug 14;35(8):1021-32. Epub 2014 Jul 14.

Department of Forensic Molecular Biology, Erasmus MC University Medical Centre Rotterdam, Rotterdam, The Netherlands; Office of the Chief Forensic Scientist, Victoria Police Forensic Services Department, Macleod, Victoria, Australia.

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http://dx.doi.org/10.1002/humu.22599DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4145662PMC
August 2014

Oxidation monitoring by fluorescence spectroscopy reveals the age of fingermarks.

Angew Chem Int Ed Engl 2014 Jun 21;53(24):6272-5. Epub 2014 May 21.

Department of Biomedical Engineering and Physics, Academic Medical Center, University of Amsterdam, Meibergdreef 9, 1105 AZ, Amsterdam (The Netherlands).

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http://dx.doi.org/10.1002/anie.201402740DOI Listing
June 2014

LoCIM-tool: An expert's assistant for inferring the major contributor's alleles in mixed consensus DNA profiles.

Forensic Sci Int Genet 2014 Jul 30;11:154-65. Epub 2014 Mar 30.

Department of Human Biological Traces, Netherlands Forensic Institute, P.O. Box 24044, 2490 AA The Hague, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.fsigen.2014.03.012DOI Listing
July 2014

Comparing six commercial autosomal STR kits in a large Dutch population sample.

Forensic Sci Int Genet 2014 May 4;10:55-63. Epub 2014 Feb 4.

Forensic Laboratory for DNA Research, Department of Human Genetics, Leiden University Medical Centre, Postzone S-05-P, P.O. Box 9600, 2300 RC Leiden, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.fsigen.2014.01.008DOI Listing
May 2014

Developmental validation of mitochondrial DNA genotyping assays for adept matrilineal inference of biogeographic ancestry at a continental level.

Forensic Sci Int Genet 2014 Jul 23;11:39-51. Epub 2014 Feb 23.

Department of Forensic Molecular Biology, Erasmus MC University Medical Center, Dr. Molewaterplein 50, 3015 GE Rotterdam, Zuid-Holland, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.fsigen.2014.02.010DOI Listing
July 2014

Developmental validation of the HIrisPlex system: DNA-based eye and hair colour prediction for forensic and anthropological usage.

Forensic Sci Int Genet 2014 Mar 27;9:150-61. Epub 2013 Dec 27.

Department of Forensic Molecular Biology, Erasmus MC University Medical Centre Rotterdam, Rotterdam, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.fsigen.2013.12.006DOI Listing
March 2014

RNA cell typing and DNA profiling of mixed samples: can cell types and donors be associated?

Sci Justice 2013 Sep 5;53(3):261-9. Epub 2013 Mar 5.

Department of Human Biological Traces, Netherlands Forensic Institute, The Hague, The Netherlands.

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http://dx.doi.org/10.1016/j.scijus.2013.02.001DOI Listing
September 2013

Development of a mRNA profiling multiplex for the inference of organ tissues.

Int J Legal Med 2013 Sep 10;127(5):891-900. Epub 2013 Jul 10.

Department of Human Biological Traces, Netherlands Forensic Institute, P.O. Box 24044, 2490 AA The Hague, The Netherlands.

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http://dx.doi.org/10.1007/s00414-013-0895-7DOI Listing
September 2013

Improved analysis of long STR amplicons from degraded single source and mixed DNA.

Int J Legal Med 2013 Jul 10;127(4):741-7. Epub 2013 Jan 10.

Department of Human Biological Traces (R&D), Netherlands Forensic Institute, P.O. Box 24044, 2490 AA, The Hague, The Netherlands.

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http://link.springer.com/content/pdf/10.1007/s00414-012-0816
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http://link.springer.com/10.1007/s00414-012-0816-1
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http://dx.doi.org/10.1007/s00414-012-0816-1DOI Listing
July 2013

Implementation of RNA profiling in forensic casework.

Forensic Sci Int Genet 2013 Jan 1;7(1):159-66. Epub 2012 Oct 1.

Department of Human Biological Traces, Netherlands Forensic Institute, P.O. Box 24044, 2490 AA The Hague, The Netherlands.

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https://linkinghub.elsevier.com/retrieve/pii/S18724973120019
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http://dx.doi.org/10.1016/j.fsigen.2012.09.003DOI Listing
January 2013

Combining results of forensic STR kits: HDplex validation including allelic association and linkage testing with NGM and Identifiler loci.

Int J Legal Med 2012 Sep 3;126(5):781-9. Epub 2012 Jul 3.

Department of Human Biological Traces (R&D), Netherlands Forensic Institute, P.O. Box 24044, 2490 AA, The Hague, The Netherlands.

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http://dx.doi.org/10.1007/s00414-012-0724-4DOI Listing
September 2012

Assessment of the stochastic threshold, back- and forward stutter filters and low template techniques for NGM.

Forensic Sci Int Genet 2012 Dec 26;6(6):708-15. Epub 2012 May 26.

Department of Human Biological Traces, Netherlands Forensic Institute, P.O. Box 24044, 2490 AA The Hague, The Netherlands.

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http://linkinghub.elsevier.com/retrieve/pii/S187249731200117
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http://dx.doi.org/10.1016/j.fsigen.2012.05.001DOI Listing
December 2012

Assessment of mock cases involving complex low template DNA mixtures: A descriptive study.

Forensic Sci Int Genet 2012 Dec 19;6(6):697-707. Epub 2012 May 19.

Department of Human Biological Traces, Netherlands Forensic Institute, P.O. Box 24044, 2490 AA The Hague, The Netherlands.

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https://linkinghub.elsevier.com/retrieve/pii/S18724973120009
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http://dx.doi.org/10.1016/j.fsigen.2012.04.007DOI Listing
December 2012

A multiplex (m)RNA-profiling system for the forensic identification of body fluids and contact traces.

Forensic Sci Int Genet 2012 Sep 22;6(5):565-77. Epub 2012 Feb 22.

Department of Human Biological Traces, Netherlands Forensic Institute, P.O. Box 24044, 2490 AA The Hague, The Netherlands.

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http://www.serveer.nl/_loadAsset.cfm?id=FOR01-N90&asset=asse
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http://linkinghub.elsevier.com/retrieve/pii/S187249731200033
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http://dx.doi.org/10.1016/j.fsigen.2012.01.009DOI Listing
September 2012

Vaginal microbial flora analysis by next generation sequencing and microarrays; can microbes indicate vaginal origin in a forensic context?

Int J Legal Med 2012 Mar 27;126(2):303-10. Epub 2012 Jan 27.

Netherlands Forensic Institute, Laan van Ypenburg 6, 2497GB, The Hague, The Netherlands.

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http://dx.doi.org/10.1007/s00414-011-0660-8DOI Listing
March 2012

Consensus and pool profiles to assist in the analysis and interpretation of complex low template DNA mixtures.

Int J Legal Med 2013 Jan 1;127(1):11-23. Epub 2011 Dec 1.

Human Biological Traces, Netherlands Forensic Institute, Laan van Ypenburg 6, 2497GB, The Hague, Netherlands.

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http://link.springer.com/10.1007/s00414-011-0647-5
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http://dx.doi.org/10.1007/s00414-011-0647-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3538021PMC
January 2013

Comparison of stubbing and the double swab method for collecting offender epithelial material from a victim's skin.

Forensic Sci Int Genet 2012 Mar 24;6(2):219-23. Epub 2011 May 24.

Netherlands Forensic Institute, P.O. Box 24044, 2490 AA The Hague, Netherlands.

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http://dx.doi.org/10.1016/j.fsigen.2011.04.019DOI Listing
March 2012

A protocol for direct and rapid multiplex PCR amplification on forensically relevant samples.

Forensic Sci Int Genet 2012 Mar 6;6(2):167-75. Epub 2011 May 6.

National crime squad, Hoofdstraat 54, 3972 LB Driebergen, The Netherlands.

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http://dx.doi.org/10.1016/j.fsigen.2011.03.014DOI Listing
March 2012

Extended PCR conditions to reduce drop-out frequencies in low template STR typing including unequal mixtures.

Forensic Sci Int Genet 2012 Jan 31;6(1):102-7. Epub 2011 Mar 31.

Netherlands Forensic Institute, Laan van Ypenburg 6, The Hague 2497GB, The Netherlands.

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http://dx.doi.org/10.1016/j.fsigen.2011.03.002DOI Listing
January 2012

Developmental validation of the IrisPlex system: determination of blue and brown iris colour for forensic intelligence.

Forensic Sci Int Genet 2011 Nov 14;5(5):464-71. Epub 2010 Oct 14.

Department of Forensic Molecular Biology, Erasmus MC University Medical Centre, Dr Molewaterplein 50, 3015 GE Rotterdam, Zuid-Holland, The Netherlands.

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http://dx.doi.org/10.1016/j.fsigen.2010.09.008DOI Listing
November 2011

Low template STR typing: effect of replicate number and consensus method on genotyping reliability and DNA database search results.

Forensic Sci Int Genet 2011 Aug 22;5(4):316-28. Epub 2010 Jul 22.

Netherlands Forensic Institute, Department of Human Biological Traces, P.O. Box 24044, 2490 AA The Hague, The Netherlands.

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http://dx.doi.org/10.1016/j.fsigen.2010.06.006DOI Listing
August 2011

Post-coital vaginal sampling with nylon flocked swabs improves DNA typing.

Forensic Sci Int Genet 2010 Feb 14;4(2):115-21. Epub 2009 Aug 14.

Department of Biology, Netherlands Forensic Institute, The Hague, The Netherlands.

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http://dx.doi.org/10.1016/j.fsigen.2009.07.003DOI Listing
February 2010

Tri-allelic SNP markers enable analysis of mixed and degraded DNA samples.

Forensic Sci Int Genet 2009 Sep 9;3(4):233-41. Epub 2009 Mar 9.

Department of Biology (R&D), Netherlands Forensic Institute, 2490 AA The Hague, The Netherlands.

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http://linkinghub.elsevier.com/retrieve/pii/S187249730900041
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http://dx.doi.org/10.1016/j.fsigen.2009.02.003DOI Listing
September 2009

Higher capillary electrophoresis injection settings as an efficient approach to increase the sensitivity of STR typing.

J Forensic Sci 2009 May;54(3):591-8

Netherlands Forensic Institute, Laan van Ypenburg 6, The Hague, 2497GB, The Netherlands.

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http://dx.doi.org/10.1111/j.1556-4029.2009.01022.xDOI Listing
May 2009

RDE-1 slicer activity is required only for passenger-strand cleavage during RNAi in Caenorhabditis elegans.

Nat Struct Mol Biol 2009 Feb 18;16(2):207-11. Epub 2009 Jan 18.

Hubrecht Institute, Royal Netherlands Academy of Arts and Sciences & University Medical Centre Utrecht, Uppsalalaan 8, 3584 CT, Utrecht, The Netherlands.

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http://dx.doi.org/10.1038/nsmb.1541DOI Listing
February 2009

Structural features of small RNA precursors determine Argonaute loading in Caenorhabditis elegans.

Nat Struct Mol Biol 2007 Oct 23;14(10):927-33. Epub 2007 Sep 23.

Hubrecht Institute, Koninklijke Nederlandse Akademie van Wetenschappen, Utrecht, 3584 CT, The Netherlands.

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http://dx.doi.org/10.1038/nsmb1308DOI Listing
October 2007

Secondary siRNAs result from unprimed RNA synthesis and form a distinct class.

Science 2007 Jan 7;315(5809):244-7. Epub 2006 Dec 7.

Hubrecht Laboratory (NIOB-KNAW), Uppsalalaan 8, 3584 CT, the Netherlands.

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http://dx.doi.org/10.1126/science.1136699DOI Listing
January 2007

Chromatin and RNAi factors protect the C. elegans germline against repetitive sequences.

Genes Dev 2005 Apr 17;19(7):782-7. Epub 2005 Mar 17.

Hubrecht Laboratory, 3584 CT Utrecht, The Netherlands.

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http://dx.doi.org/10.1101/gad.332305DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1074315PMC
April 2005

RDE-2 interacts with MUT-7 to mediate RNA interference in Caenorhabditis elegans.

Nucleic Acids Res 2005 13;33(1):347-55. Epub 2005 Jan 13.

Hubrecht Laboratory, Centre for Biomedical Genetics Uppsalalaan 8, 3584 CT Utrecht, The Netherlands.

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http://dx.doi.org/10.1093/nar/gki183DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC546165PMC
February 2005

Transposon silencing in the Caenorhabditis elegans germ line by natural RNAi.

Nature 2003 Nov;426(6964):310-4

Hubrecht Laboratory, Uppsalalaan 8, 3584 CT, Utrecht, The Netherlands.

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http://dx.doi.org/10.1038/nature02107DOI Listing
November 2003

RNA helicase MUT-14-dependent gene silencing triggered in C. elegans by short antisense RNAs.

Science 2002 Jan;295(5555):694-7

Hubrecht Laboratory, Center for Biomedical Genetics, Uppsalalaan 8, 3584 CT, Utrecht, Netherlands.

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http://www.sciencemag.org/cgi/doi/10.1126/science.1067534
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http://dx.doi.org/10.1126/science.1067534DOI Listing
January 2002

The Mechanism of RNA Interference and the Transposon Silencing in .

ScientificWorldJournal 2002 23;2:3-4. Epub 2002 Jan 23.

Hubrecht Laboratory, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands.

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http://dx.doi.org/10.1100/tsw.2002.2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6009259PMC
January 2002