Publications by authors named "Timothy Ravasi"

100Publications

Methods matter in repeating ocean acidification studies.

Nature 2020 Oct 21;586(7830):E20-E24. Epub 2020 Oct 21.

Australian Research Council Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, Queensland, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/s41586-020-2803-xDOI Listing
October 2020

Probing SWATH-MS as a tool for proteome level quantification in a nonmodel fish.

Mol Ecol Resour 2020 Jul 20. Epub 2020 Jul 20.

Marine Climate Change Unit, Okinawa Institute of Science and Technology Graduate University (OIST), Onna-son, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/1755-0998.13229DOI Listing
July 2020

Species-specific molecular responses of wild coral reef fishes during a marine heatwave.

Sci Adv 2020 03 18;6(12):eaay3423. Epub 2020 Mar 18.

Marine Climate Change Unit, Okinawa Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1126/sciadv.aay3423DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7080449PMC
March 2020

Magnetic core-shell nanowires as MRI contrast agents for cell tracking.

J Nanobiotechnology 2020 Mar 12;18(1):42. Epub 2020 Mar 12.

Division of Computer, Electrical and Mathematical Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal, Jeddah, 23955-6900, Saudi Arabia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12951-020-00597-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7069006PMC
March 2020

Neural effects of elevated CO in fish may be amplified by a vicious cycle.

Conserv Physiol 2019 8;7(1):coz100. Epub 2019 Dec 8.

Section for Physiology and Cell Biology, Department of Biosciences, University of Oslo, Blindernveien 31, 0316 Oslo, Norway.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/conphys/coz100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6899223PMC
December 2019

Iron-Based Core-Shell Nanowires for Combinatorial Drug Delivery and Photothermal and Magnetic Therapy.

ACS Appl Mater Interfaces 2019 Nov 18;11(47):43976-43988. Epub 2019 Nov 18.

Division of Computer, Electrical, and Mathematical Sciences and Engineering , King Abdullah University of Science and Technology , Thuwal Jeddah 23955-6900 , Saudi Arabia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/acsami.9b17512DOI Listing
November 2019

Nuclear AGO1 Regulates Gene Expression by Affecting Chromatin Architecture in Human Cells.

Cell Syst 2019 Nov 16;9(5):446-458.e6. Epub 2019 Oct 16.

King Abdullah University Science and Technology (KAUST), BESE Division, KAUST Environmental Epigenetics Program, Thuwal 23955-6900, Saudi Arabia; IRCSS Fondazione, Santa Lucia, Epigenetics and Genome Reprogramming, Rome, Italy. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.cels.2019.09.005DOI Listing
November 2019

Beyond buying time: the role of plasticity in phenotypic adaptation to rapid environmental change.

Philos Trans R Soc Lond B Biol Sci 2019 03;374(1768):20180174

3 The Swire Institute of Marine Science, School of Biological Sciences, The University of Hong Kong , Pokfulam Road , Hong Kong , SAR , People's Republic of China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1098/rstb.2018.0174DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6365870PMC
March 2019

Morphological characterization of virus-like particles in coral reef sponges.

PeerJ 2018 17;6:e5625. Epub 2018 Oct 17.

Australian Institute of Marine Science, Townsville, Queensland, Australia.

View Article

Download full-text PDF

Source
https://peerj.com/articles/5625
Publisher Site
http://dx.doi.org/10.7717/peerj.5625DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6195793PMC
October 2018

Phenotypic and molecular consequences of stepwise temperature increase across generations in a coral reef fish.

Mol Ecol 2018 11 24;27(22):4516-4528. Epub 2018 Oct 24.

KAUST Environmental Epigenetics Program (KEEP), Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.

View Article

Download full-text PDF

Source
http://doi.wiley.com/10.1111/mec.14884
Publisher Site
http://dx.doi.org/10.1111/mec.14884DOI Listing
November 2018

Finding Nemo's Genes: A chromosome-scale reference assembly of the genome of the orange clownfish Amphiprion percula.

Mol Ecol Resour 2019 May 10;19(3):570-585. Epub 2018 Sep 10.

KAUST Environmental Epigenetic Program, Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/1755-0998.12939DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7379943PMC
May 2019

Inductively actuated micro needles for on-demand intracellular delivery.

Sci Rep 2018 07 2;8(1):9918. Epub 2018 Jul 2.

Computer, Electrical and Mathematical Science and Engineering, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/s41598-018-28194-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6028653PMC
July 2018

An interplay between plasticity and parental phenotype determines impacts of ocean acidification on a reef fish.

Nat Ecol Evol 2018 02 18;2(2):334-342. Epub 2017 Dec 18.

KAUST Environmental Epigenetic Program (KEEP), Division of Biological and Environmental Sciences & Engineering, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/s41559-017-0428-8DOI Listing
February 2018

Anti-cancer agents in Saudi Arabian herbals revealed by automated high-content imaging.

PLoS One 2017 13;12(6):e0177316. Epub 2017 Jun 13.

KAUST Environmental Epigenetics Program, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0177316PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5469452PMC
October 2017

Astrocyte-specific overexpressed gene signatures in response to methamphetamine exposure in vitro.

J Neuroinflammation 2017 03 9;14(1):49. Epub 2017 Mar 9.

Cellular and Molecular Neurosciences Department, The Scripps Research Institute, La Jolla, CA, 92037, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12974-017-0825-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5345234PMC
March 2017

Mesenchymal stem cells cultured on magnetic nanowire substrates.

Nanotechnology 2017 Feb 28;28(5):055703. Epub 2016 Dec 28.

Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal 23955-6900, Kingdom of Saudi Arabia. Division of Computer, Electrical and Mathematical Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal 23955-6900, Kingdom of Saudi Arabia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1088/1361-6528/aa52a3DOI Listing
February 2017

Shedding light on cell compartmentation in the candidate phylum Poribacteria by high resolution visualisation and transcriptional profiling.

Sci Rep 2016 10 31;6:35860. Epub 2016 Oct 31.

School of Biotechnology and Biomolecular Sciences &Centre for Marine Bio-Innovation, University of New South Wales, Sydney, 2052, Australia.

View Article

Download full-text PDF

Source
http://www.nature.com/articles/srep35860
Publisher Site
http://dx.doi.org/10.1038/srep35860DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5087111PMC
October 2016

Functionalized magnetic nanowires for chemical and magneto-mechanical induction of cancer cell death.

Sci Rep 2016 10 24;6:35786. Epub 2016 Oct 24.

Division of Computer, Electrical and Mathematical Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal Jeddah, 23955-6900, Saudi Arabia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/srep35786DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5075884PMC
October 2016

Sex Change in Clownfish: Molecular Insights from Transcriptome Analysis.

Sci Rep 2016 10 17;6:35461. Epub 2016 Oct 17.

King Abdullah University of Science and Technology (KAUST), Division of Biological and Environmental Science &Engineering, Red Sea Research Center, Thuwal 23955-6900, Saudi Arabia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/srep35461DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5066260PMC
October 2016

Characterization of piRNAs across postnatal development in mouse brain.

Sci Rep 2016 04 26;6:25039. Epub 2016 Apr 26.

Division of Applied Mathematics and Computer Sciences, King Abdullah University of Science and Technology, Thuwal 23955-6900, Kingdom of Saudi Arabia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/srep25039DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4844963PMC
April 2016

Methamphetamine abuse affects gene expression in brain-derived microglia of SIV-infected macaques to enhance inflammation and promote virus targets.

BMC Immunol 2016 04 23;17(1). Epub 2016 Apr 23.

Cellular and Molecular Neurosciences Department, The Scripps Research Institute, 10550 North Torrey Pines Rd. SR307, La Jolla, CA, 92037, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12865-016-0145-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4841970PMC
April 2016

Quantitative analysis of oyster larval proteome provides new insights into the effects of multiple climate change stressors.

Glob Chang Biol 2016 Jun 17;22(6):2054-68. Epub 2016 Mar 17.

The Swire Institute of Marine Science and School of Biological Sciences, The University of Hong Kong, Pok Fu Lam Road, Hong Kong Island, Hong Kong SAR, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/gcb.13249DOI Listing
June 2016

Cytotoxic effects of nickel nanowires in human fibroblasts.

Toxicol Rep 2016 9;3:373-380. Epub 2016 Mar 9.

Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal 23955, Saudi Arabia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.toxrep.2016.03.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5615840PMC
March 2016

miRNA Repertoires of Demosponges Stylissa carteri and Xestospongia testudinaria.

PLoS One 2016 12;11(2):e0149080. Epub 2016 Feb 12.

Division of Biological and Environmental Sciences & Engineering, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Kingdom of Saudi Arabia.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0149080PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4752309PMC
July 2016

Co-transcriptomic Analysis by RNA Sequencing to Simultaneously Measure Regulated Gene Expression in Host and Bacterial Pathogen.

Methods Mol Biol 2016 ;1390:145-58

Institute for Molecular Bioscience, The University of Queensland, St Lucia, Brisbane, QLD, 4072, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/978-1-4939-3335-8_10DOI Listing
October 2016

Semi-automated quantification of living cells with internalized nanostructures.

J Nanobiotechnology 2016 Jan 15;14. Epub 2016 Jan 15.

Division of Biological and Environmental Sciences and Engineering, KAUST Environmental Epigenetic Program (KEEP), King Abdullah University of Science and Technology (KAUST), Thuwal, 23955, Kingdom of Saudi Arabia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12951-015-0153-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4714438PMC
January 2016

Cytotoxicity and intracellular dissolution of nickel nanowires.

Nanotoxicology 2016 09 5;10(7):871-80. Epub 2016 Feb 5.

b Division of Computer , Electrical and Mathematical Sciences and Engineering, King Abdullah University of Science and Technology , Thuwal , Kingdom of Saudi Arabia , and.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3109/17435390.2015.1132343DOI Listing
September 2016

Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea.

BMC Genomics 2015 Dec 15;16:1063. Epub 2015 Dec 15.

KAUST Environmental Epigenetic Program (KEEP), Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12864-015-2262-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4678614PMC
December 2015

Proteomic Changes Associated with Successive Reproductive Periods in Male Polychaetous Neanthes arenaceodentata.

Sci Rep 2015 Sep 4;5:13561. Epub 2015 Sep 4.

KAUST Environmental Epigenetic Program (KEEP), Division of Biological and Environmental Sciences &Engineering, Division of Applied Mathematics and Computer Sciences. King Abdullah University of Science and Technology, Kingdom of Saudi Arabia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/srep13561DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4559745PMC
September 2015

Selective phosphorylation during early macrophage differentiation.

Proteomics 2015 Nov 15;15(21):3731-43. Epub 2015 Sep 15.

Division of Biological and Environmental Sciences & Engineering, Division of Applied Mathematics and Computer Sciences, King Abdullah University of Science & Technology, Thuwal, Kingdom of Saudi Arabia.

View Article

Download full-text PDF

Source
http://doi.wiley.com/10.1002/pmic.201400511
Publisher Site
http://dx.doi.org/10.1002/pmic.201400511DOI Listing
November 2015

Exploring seascape genetics and kinship in the reef sponge Stylissa carteri in the Red Sea.

Ecol Evol 2015 Jul 1;5(13):2487-502. Epub 2015 Jun 1.

Red Sea Research Center, King Abdullah University of Science and Technology Thuwal, 23599-6900, Saudi Arabia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/ece3.1511DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4523348PMC
July 2015

Non-chemotoxic induction of cancer cell death using magnetic nanowires.

Int J Nanomedicine 2015 17;10:2141-53. Epub 2015 Mar 17.

Division of Computer, Electrical and Mathematical Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.2147/IJN.S77081DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4370947PMC
May 2016

Highlighting nonlinear patterns in population genetics datasets.

Sci Rep 2015 Jan 30;5:8140. Epub 2015 Jan 30.

1] Integrative Systems Biology Laboratory, Biological and Environmental Sciences and Engineering Division, Computer, Electrical and Mathematical Sciences and Engineering Division, Computational Bioscience Research Center, King Abdullah University of Science and Technology (KAUST), Ibn Al Haytham Bldg. 2, Level 4, Thuwal 23955-6900, Kingdom of Saudi Arabia [2] Division of Medical Genetics, Department of Medicine, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093 USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/srep08140DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4311249PMC
January 2015

The co-transcriptome of uropathogenic Escherichia coli-infected mouse macrophages reveals new insights into host-pathogen interactions.

Cell Microbiol 2015 May 24;17(5):730-46. Epub 2015 Jan 24.

Division of Biological and Environmental Sciences and Engineering, Division of Computer, Electrical and Mathematical Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia; Division of Medical Genetics, Department of Medicine, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA, USA.

View Article

Download full-text PDF

Source
http://doi.wiley.com/10.1111/cmi.12397
Publisher Site
http://dx.doi.org/10.1111/cmi.12397DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4950338PMC
May 2015

GeoChip-based insights into the microbial functional gene repertoire of marine sponges (high microbial abundance, low microbial abundance) and seawater.

FEMS Microbiol Ecol 2014 Dec 10;90(3):832-43. Epub 2014 Nov 10.

Department of Botany II, Julius-von-Sachs Institute for Biological Sciences, University of Wuerzburg, Wuerzburg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/1574-6941.12441DOI Listing
December 2014

Transcriptome analysis elucidates key developmental components of bryozoan lophophore development.

Sci Rep 2014 Oct 10;4:6534. Epub 2014 Oct 10.

1] Computational Biosciences Research Center, Division of Biological and Environmental Sciences &Engineering, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia [2] Division of Applied Mathematics and Computer Sciences, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/srep06534DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4192642PMC
October 2014

Dynamic epigenetic control of highly conserved noncoding elements.

PLoS One 2014 7;9(10):e109326. Epub 2014 Oct 7.

Division of Biological and Environmental Sciences & Engineering, Division of Applied Mathematics and Computer Sciences, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia; Department of Medicine, Division of Genetics, University of California San Diego, La Jolla, California, United States of America.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0109326PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4188601PMC
December 2015

Proteomic profiling during the pre-competent to competent transition of the biofouling polychaete Hydroides elegans.

Biofouling 2014 Sep;30(8):921-8

a KAUST Global Collaborative Research Program, Division of Life Science , The Hong Kong University of Science and Technology , Hong Kong SAR , PR China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1080/08927014.2014.951341DOI Listing
September 2014

Revealing microbial functional activities in the Red Sea sponge Stylissa carteri by metatranscriptomics.

Environ Microbiol 2014 Dec 9;16(12):3683-98. Epub 2014 Jul 9.

Department of Botany II, Julius-von-Sachs Institute for Biological Sciences, University of Wuerzburg, Julius-von-Sachs Platz 3, 97082, Wuerzburg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/1462-2920.12533DOI Listing
December 2014

Actinomycetes from Red Sea sponges: sources for chemical and phylogenetic diversity.

Mar Drugs 2014 May 12;12(5):2771-89. Epub 2014 May 12.

Department of Botany II, Julius-von-Sachs Institute for Biological Sciences, University of Würzburg, Julius-von-Sachs-Platz 3, Würzburg D-97082, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3390/md12052771DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4052315PMC
May 2014

A promoter-level mammalian expression atlas.

Authors:
Alistair R R Forrest Hideya Kawaji Michael Rehli J Kenneth Baillie Michiel J L de Hoon Vanja Haberle Timo Lassmann Ivan V Kulakovskiy Marina Lizio Masayoshi Itoh Robin Andersson Christopher J Mungall Terrence F Meehan Sebastian Schmeier Nicolas Bertin Mette Jørgensen Emmanuel Dimont Erik Arner Christian Schmidl Ulf Schaefer Yulia A Medvedeva Charles Plessy Morana Vitezic Jessica Severin Colin A Semple Yuri Ishizu Robert S Young Margherita Francescatto Intikhab Alam Davide Albanese Gabriel M Altschuler Takahiro Arakawa John A C Archer Peter Arner Magda Babina Sarah Rennie Piotr J Balwierz Anthony G Beckhouse Swati Pradhan-Bhatt Judith A Blake Antje Blumenthal Beatrice Bodega Alessandro Bonetti James Briggs Frank Brombacher A Maxwell Burroughs Andrea Califano Carlo V Cannistraci Daniel Carbajo Yun Chen Marco Chierici Yari Ciani Hans C Clevers Emiliano Dalla Carrie A Davis Michael Detmar Alexander D Diehl Taeko Dohi Finn Drabløs Albert S B Edge Matthias Edinger Karl Ekwall Mitsuhiro Endoh Hideki Enomoto Michela Fagiolini Lynsey Fairbairn Hai Fang Mary C Farach-Carson Geoffrey J Faulkner Alexander V Favorov Malcolm E Fisher Martin C Frith Rie Fujita Shiro Fukuda Cesare Furlanello Masaaki Furino Jun-ichi Furusawa Teunis B Geijtenbeek Andrew P Gibson Thomas Gingeras Daniel Goldowitz Julian Gough Sven Guhl Reto Guler Stefano Gustincich Thomas J Ha Masahide Hamaguchi Mitsuko Hara Matthias Harbers Jayson Harshbarger Akira Hasegawa Yuki Hasegawa Takehiro Hashimoto Meenhard Herlyn Kelly J Hitchens Shannan J Ho Sui Oliver M Hofmann Ilka Hoof Furni Hori Lukasz Huminiecki Kei Iida Tomokatsu Ikawa Boris R Jankovic Hui Jia Anagha Joshi Giuseppe Jurman Bogumil Kaczkowski Chieko Kai Kaoru Kaida Ai Kaiho Kazuhiro Kajiyama Mutsumi Kanamori-Katayama Artem S Kasianov Takeya Kasukawa Shintaro Katayama Sachi Kato Shuji Kawaguchi Hiroshi Kawamoto Yuki I Kawamura Tsugumi Kawashima Judith S Kempfle Tony J Kenna Juha Kere Levon M Khachigian Toshio Kitamura S Peter Klinken Alan J Knox Miki Kojima Soichi Kojima Naoto Kondo Haruhiko Koseki Shigeo Koyasu Sarah Krampitz Atsutaka Kubosaki Andrew T Kwon Jeroen F J Laros Weonju Lee Andreas Lennartsson Kang Li Berit Lilje Leonard Lipovich Alan Mackay-Sim Ri-ichiroh Manabe Jessica C Mar Benoit Marchand Anthony Mathelier Niklas Mejhert Alison Meynert Yosuke Mizuno David A de Lima Morais Hiromasa Morikawa Mitsuru Morimoto Kazuyo Moro Efthymios Motakis Hozumi Motohashi Christine L Mummery Mitsuyoshi Murata Sayaka Nagao-Sato Yutaka Nakachi Fumio Nakahara Toshiyuki Nakamura Yukio Nakamura Kenichi Nakazato Erik van Nimwegen Noriko Ninomiya Hiromi Nishiyori Shohei Noma Shohei Noma Tadasuke Noazaki Soichi Ogishima Naganari Ohkura Hiroko Ohimiya Hiroshi Ohno Mitsuhiro Ohshima Mariko Okada-Hatakeyama Yasushi Okazaki Valerio Orlando Dmitry A Ovchinnikov Arnab Pain Robert Passier Margaret Patrikakis Helena Persson Silvano Piazza James G D Prendergast Owen J L Rackham Jordan A Ramilowski Mamoon Rashid Timothy Ravasi Patrizia Rizzu Marco Roncador Sugata Roy Morten B Rye Eri Saijyo Antti Sajantila Akiko Saka Shimon Sakaguchi Mizuho Sakai Hiroki Sato Suzana Savvi Alka Saxena Claudio Schneider Erik A Schultes Gundula G Schulze-Tanzil Anita Schwegmann Thierry Sengstag Guojun Sheng Hisashi Shimoji Yishai Shimoni Jay W Shin Christophe Simon Daisuke Sugiyama Takaai Sugiyama Masanori Suzuki Naoko Suzuki Rolf K Swoboda Peter A C 't Hoen Michihira Tagami Naoko Takahashi Jun Takai Hiroshi Tanaka Hideki Tatsukawa Zuotian Tatum Mark Thompson Hiroo Toyodo Tetsuro Toyoda Elvind Valen Marc van de Wetering Linda M van den Berg Roberto Verado Dipti Vijayan Ilya E Vorontsov Wyeth W Wasserman Shoko Watanabe Christine A Wells Louise N Winteringham Ernst Wolvetang Emily J Wood Yoko Yamaguchi Masayuki Yamamoto Misako Yoneda Yohei Yonekura Shigehiro Yoshida Susan E Zabierowski Peter G Zhang Xiaobei Zhao Silvia Zucchelli Kim M Summers Harukazu Suzuki Carsten O Daub Jun Kawai Peter Heutink Winston Hide Tom C Freeman Boris Lenhard Vladimir B Bajic Martin S Taylor Vsevolod J Makeev Albin Sandelin David A Hume Piero Carninci Yoshihide Hayashizaki

Nature 2014 Mar;507(7493):462-70

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nature13182DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4529748PMC
March 2014

Draft Genome Sequence of the Antitrypanosomally Active Sponge-Associated Bacterium Actinokineospora sp. Strain EG49.

Genome Announc 2014 Mar 6;2(2). Epub 2014 Mar 6.

Department of Botany II, Julius-von-Sachs Institute for Biological Sciences, University of Würzburg, Würzburg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/genomeA.00160-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3945511PMC
March 2014

Quantitative proteomics study of larval settlement in the Barnacle Balanus amphitrite.

PLoS One 2014 13;9(2):e88744. Epub 2014 Feb 13.

KAUST Global Collaborative Research Program, Division of Life Science, The Hong Kong University of Science and Technology, Hong Kong SAR, China.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0088744PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3923807PMC
October 2014

Proteomic changes between male and female worms of the polychaetous annelid Neanthes arenaceodentata before and after spawning.

PLoS One 2013 30;8(8):e72990. Epub 2013 Aug 30.

KAUST Global Collaborative Research, Division of Life Science, Hong Kong University of Science and Technology, Hong Kong SAR, China ; Integrative Systems Biology Laboratory, Division of Biological and Environmental Sciences and Engineering, Division of Applied Mathematics and Computer Sciences, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0072990PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3758283PMC
April 2014

Specificity and transcriptional activity of microbiota associated with low and high microbial abundance sponges from the Red Sea.

Mol Ecol 2014 Mar 20;23(6):1348-63. Epub 2013 Aug 20.

Department of Botany II, Julius-von-Sachs Institute for Biological Sciences, University of Wuerzburg, Julius-von-Sachs Platz 3, 97082, Wuerzburg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/mec.12365DOI Listing
March 2014

Exploitation of genetic interaction network topology for the prediction of epistatic behavior.

Genomics 2013 Oct 25;102(4):202-8. Epub 2013 Jul 25.

Integrative Systems Biology Lab, Biological and Environmental Sciences and Engineering Division, Computer, Electrical and Mathematical Sciences and Engineering Division, Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Kingdom of Saudi Arabia; Division of Medical Genetics, Department of Medicine, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093 USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ygeno.2013.07.010DOI Listing
October 2013

Proteomic and metabolomic profiles of marine Vibrio sp. 010 in response to an antifoulant challenge.

Biofouling 2013 4;29(7):789-802. Epub 2013 Jul 4.

KAUST Global Collaborative Research, Division of Life Science, The Hong Kong University of Science and Technology, Hong Kong SAR, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1080/08927014.2013.805209DOI Listing
November 2013

Minimum curvilinearity to enhance topological prediction of protein interactions by network embedding.

Bioinformatics 2013 Jul;29(13):i199-209

Integrative Systems Biology Laboratory, Biological and Environmental Sciences and Engineering Division, Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Kingdom of Saudi Arabia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btt208DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3694668PMC
July 2013

From link-prediction in brain connectomes and protein interactomes to the local-community-paradigm in complex networks.

Sci Rep 2013 ;3:1613

Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Kingdom of Saudi Arabia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/srep01613DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3619147PMC
October 2013

Pivotal role of the muscle-contraction pathway in cryptorchidism and evidence for genomic connections with cardiomyopathy pathways in RASopathies.

BMC Med Genomics 2013 Feb 14;6. Epub 2013 Feb 14.

Integrative Systems Biology Laboratory, Biological and Environmental Sciences and Engineering Division, Computational Bioscience Research Center, King Abdullah University for Science and Technology, Thuwal, Saudi Arabia.

View Article

Download full-text PDF

Source
http://bmcmedgenomics.biomedcentral.com/articles/10.1186/175
Publisher Site
http://dx.doi.org/10.1186/1755-8794-6-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3626861PMC
February 2013

Transcriptome and quantitative proteome analysis reveals molecular processes associated with larval metamorphosis in the polychaete Pseudopolydora vexillosa.

J Proteome Res 2013 Mar 29;12(3):1344-58. Epub 2013 Jan 29.

KAUST Global Collaborative Research, Division of Life Science, The Hong Kong University of Science and Technology, Hong Kong.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/pr3010088DOI Listing
March 2013

The evolution of ultraconserved elements with different phylogenetic origins.

BMC Evol Biol 2012 Dec 5;12:236. Epub 2012 Dec 5.

Integrative Systems Biology Lab, Division of Biological and Environmental Sciences & Engineering, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Kingdom of Saudi Arabia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2148-12-236DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3556307PMC
December 2012

Bacterial community profiles in low microbial abundance sponges.

FEMS Microbiol Ecol 2013 Jan 4;83(1):232-41. Epub 2012 Sep 4.

Division of Chemical & Life Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/j.1574-6941.2012.01467.xDOI Listing
January 2013

SECOM: a novel hash seed and community detection based-approach for genome-scale protein domain identification.

PLoS One 2012 28;7(6):e39475. Epub 2012 Jun 28.

Mathematical and Computer Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0039475PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3386278PMC
March 2013

First proteome of the egg perivitelline fluid of a freshwater gastropod with aerial oviposition.

J Proteome Res 2012 Aug 13;11(8):4240-8. Epub 2012 Jul 13.

Department of Biology, Hong Kong Baptist University, Hong Kong, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/pr3003613DOI Listing
August 2012

Involvement of Wnt signaling pathways in the metamorphosis of the bryozoan Bugula neritina.

PLoS One 2012 20;7(3):e33323. Epub 2012 Mar 20.

KAUST Global Collaborative Research Program, Division of Life Sciences, Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong SAR, China.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0033323PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3308966PMC
August 2012

Defining the protein interaction network of human malaria parasite Plasmodium falciparum.

Genomics 2012 Feb 8;99(2):69-75. Epub 2011 Dec 8.

Division of Chemical & Life Sciences and Engineering, King Abdullah University of Science and Technology Thuwal 23955, Saudi Arabia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ygeno.2011.11.006DOI Listing
February 2012

Unexpected complexity of the reef-building coral Acropora millepora transcription factor network.

BMC Syst Biol 2011 Apr 28;5:58. Epub 2011 Apr 28.

Division of Chemical & Life Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1752-0509-5-58DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3096595PMC
April 2011

Quantitative proteomics identify molecular targets that are crucial in larval settlement and metamorphosis of Bugula neritina.

J Proteome Res 2011 Jan 16;10(1):349-60. Epub 2010 Dec 16.

KAUST Global Collaborative Research Program, Section of Marine Ecology and Biotechnology, Division of Life Science, Hong Kong University of Science and Technology, Hong Kong SAR, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/pr100817vDOI Listing
January 2011

Coevolution within a transcriptional network by compensatory trans and cis mutations.

Genome Res 2010 Dec 26;20(12):1672-8. Epub 2010 Oct 26.

Department of Bioengineering, University of California, San Diego, La Jolla, California 92093, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1101/gr.111765.110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2989993PMC
December 2010

Nonlinear dimension reduction and clustering by Minimum Curvilinearity unfold neuropathic pain and tissue embryological classes.

Bioinformatics 2010 Sep;26(18):i531-9

Computational Bioscience Research Center, Division of Chemical and Life Sciences and Engineering, King Abdullah University for Science and Technology (KAUST), Jeddah, Kingdom of Saudi Arabia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btq376DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2935424PMC
September 2010

Evolutionary divergence in the fungal response to fluconazole revealed by soft clustering.

Genome Biol 2010 23;11(7):R77. Epub 2010 Jul 23.

Department of Bioengineering, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/gb-2010-11-7-r77DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2926788PMC
December 2010

Rapid transcriptome and proteome profiling of a non-model marine invertebrate, Bugula neritina.

Proteomics 2010 Aug;10(16):2972-81

Department of Biology, Hong Kong University of Science and Technology, Hong Kong SAR, P R China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/pmic.201000056DOI Listing
August 2010

Dependency on de novo protein synthesis and proteomic changes during metamorphosis of the marine bryozoan Bugula neritina.

Proteome Sci 2010 May 24;8:25. Epub 2010 May 24.

Department of Biology, Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong SAR.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1477-5956-8-25DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2890537PMC
May 2010

Novel systems biology insights using antifibrotic approaches for diabetic kidney disease.

Expert Rev Endocrinol Metab 2010 Jan;5(1):127-135

d Director, Center for Renal Translational Medicine, UCSD/VA San Diego Health System, La Jolla, CA 92093-0711, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1586/eem.09.72DOI Listing
January 2010

Pirfenidone is renoprotective in diabetic kidney disease.

J Am Soc Nephrol 2009 Aug 2;20(8):1765-75. Epub 2009 Jul 2.

Center for Renal Translational Medicine, Division of Nephrology and Hypertension, Department of Medicine, University of California, San Diego, La Jolla, CA 92093, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1681/ASN.2008090931DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2723978PMC
August 2009

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

Authors:
Harukazu Suzuki Alistair R R Forrest Erik van Nimwegen Carsten O Daub Piotr J Balwierz Katharine M Irvine Timo Lassmann Timothy Ravasi Yuki Hasegawa Michiel J L de Hoon Shintaro Katayama Kate Schroder Piero Carninci Yasuhiro Tomaru Mutsumi Kanamori-Katayama Atsutaka Kubosaki Altuna Akalin Yoshinari Ando Erik Arner Maki Asada Hiroshi Asahara Timothy Bailey Vladimir B Bajic Denis Bauer Anthony G Beckhouse Nicolas Bertin Johan Björkegren Frank Brombacher Erika Bulger Alistair M Chalk Joe Chiba Nicole Cloonan Adam Dawe Josee Dostie Pär G Engström Magbubah Essack Geoffrey J Faulkner J Lynn Fink David Fredman Ko Fujimori Masaaki Furuno Takashi Gojobori Julian Gough Sean M Grimmond Mika Gustafsson Megumi Hashimoto Takehiro Hashimoto Mariko Hatakeyama Susanne Heinzel Winston Hide Oliver Hofmann Michael Hörnquist Lukasz Huminiecki Kazuho Ikeo Naoko Imamoto Satoshi Inoue Yusuke Inoue Ryoko Ishihara Takao Iwayanagi Anders Jacobsen Mandeep Kaur Hideya Kawaji Markus C Kerr Ryuichiro Kimura Syuhei Kimura Yasumasa Kimura Hiroaki Kitano Hisashi Koga Toshio Kojima Shinji Kondo Takeshi Konno Anders Krogh Adele Kruger Ajit Kumar Boris Lenhard Andreas Lennartsson Morten Lindow Marina Lizio Cameron Macpherson Norihiro Maeda Christopher A Maher Monique Maqungo Jessica Mar Nicholas A Matigian Hideo Matsuda John S Mattick Stuart Meier Sei Miyamoto Etsuko Miyamoto-Sato Kazuhiko Nakabayashi Yutaka Nakachi Mika Nakano Sanne Nygaard Toshitsugu Okayama Yasushi Okazaki Haruka Okuda-Yabukami Valerio Orlando Jun Otomo Mikhail Pachkov Nikolai Petrovsky Charles Plessy John Quackenbush Aleksandar Radovanovic Michael Rehli Rintaro Saito Albin Sandelin Sebastian Schmeier Christian Schönbach Ariel S Schwartz Colin A Semple Miho Sera Jessica Severin Katsuhiko Shirahige Cas Simons George St Laurent Masanori Suzuki Takahiro Suzuki Matthew J Sweet Ryan J Taft Shizu Takeda Yoichi Takenaka Kai Tan Martin S Taylor Rohan D Teasdale Jesper Tegnér Sarah Teichmann Eivind Valen Claes Wahlestedt Kazunori Waki Andrew Waterhouse Christine A Wells Ole Winther Linda Wu Kazumi Yamaguchi Hiroshi Yanagawa Jun Yasuda Mihaela Zavolan David A Hume Takahiro Arakawa Shiro Fukuda Kengo Imamura Chikatoshi Kai Ai Kaiho Tsugumi Kawashima Chika Kawazu Yayoi Kitazume Miki Kojima Hisashi Miura Kayoko Murakami Mitsuyoshi Murata Noriko Ninomiya Hiromi Nishiyori Shohei Noma Chihiro Ogawa Takuma Sano Christophe Simon Michihira Tagami Yukari Takahashi Jun Kawai Yoshihide Hayashizaki

Nat Genet 2009 May 19;41(5):553-62. Epub 2009 Apr 19.

RIKEN Omics Science Center, RIKEN Yokohama Institute, Kanagawa, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/ng.375DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6711855PMC
May 2009

A systems approach to delineate functions of paralogous transcription factors: role of the Yap family in the DNA damage response.

Proc Natl Acad Sci U S A 2008 Feb 19;105(8):2934-9. Epub 2008 Feb 19.

Department of Bioengineering, University of California at San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.0708670105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2268563PMC
February 2008

Integrated approaches to uncovering transcription regulatory networks in mammalian cells.

Genomics 2008 Mar 8;91(3):219-31. Epub 2008 Jan 8.

Department of Bioengineering, Jacobs School of Engineering, University of California at San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA.

View Article

Download full-text PDF

Source
http://linkinghub.elsevier.com/retrieve/pii/S088875430700283
Publisher Site
http://dx.doi.org/10.1016/j.ygeno.2007.11.005DOI Listing
March 2008

Systems biology of transcription control in macrophages.

Bioessays 2007 Dec;29(12):1215-26

Scripps NeuroAIDS Preclinical Studies Centre and Department of Bioengineering, Jacobs School of Engineering, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/bies.20683DOI Listing
December 2007

Differential effects of CpG DNA on IFN-beta induction and STAT1 activation in murine macrophages versus dendritic cells: alternatively activated STAT1 negatively regulates TLR signaling in macrophages.

J Immunol 2007 Sep;179(6):3495-503

Cooperative Research Centre for Chronic Inflammatory Diseases and Special Research Centre for Functional and Applied Genomics, Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.4049/jimmunol.179.6.3495DOI Listing
September 2007

Transcriptional regulatory networks in macrophages.

Novartis Found Symp 2007 ;281:2-18; discussion 18-24, 50-3, 208-9

ARC Special Research Centre for Functional and Applied Genomics and CRC for Chronic Inflammatory Diseases, Institute for Molecular Bioscience, University of Queensland, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/9780470062128.ch2DOI Listing
December 2007

Gpnmb is induced in macrophages by IFN-gamma and lipopolysaccharide and acts as a feedback regulator of proinflammatory responses.

J Immunol 2007 May;178(10):6557-66

Cooperative Research Centre for Chronic Inflammatory Diseases and Special Research Centre for Functional and Applied Genomics, Institute for Molecular Bioscience, University of Queensland, Queensland, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.4049/jimmunol.178.10.6557DOI Listing
May 2007

Mouse neutrophilic granulocytes express mRNA encoding the macrophage colony-stimulating factor receptor (CSF-1R) as well as many other macrophage-specific transcripts and can transdifferentiate into macrophages in vitro in response to CSF-1.

J Leukoc Biol 2007 Jul 16;82(1):111-23. Epub 2007 Apr 16.

CRC for Chronic Inflammatory Diseases and ARC Special Research Centre for Functional and Applied Genomics, Institute for Molecular Bioscience, The University of Queensland, St. Lucia, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1189/jlb.1206713DOI Listing
July 2007

Systems biology of innate immunity.

Cell Immunol 2006 Dec 11;244(2):105-9. Epub 2007 Apr 11.

Unit of Computational Medicine, King Gustaf V Research Institute, Department of Medicine, Karolinska Institute, SE-171 76 Stockholm, Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.cellimm.2007.01.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1947944PMC
December 2006

PU.1 and ICSBP control constitutive and IFN-gamma-regulated Tlr9 gene expression in mouse macrophages.

J Leukoc Biol 2007 Jun 14;81(6):1577-90. Epub 2007 Mar 14.

Special Research Centre for Functional and Applied Genomics, Institute for Molecular Bioscience, University of Queensland, St. Lucia, Brisbane 4072, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1189/jlb.0107036DOI Listing
June 2007

LPS regulates proinflammatory gene expression in macrophages by altering histone deacetylase expression.

FASEB J 2006 Jul;20(9):1315-27

Cooperative Research Centre for Chronic inflammatory Diseases, Institute for Molecular Bioscience, University of Queensland, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1096/fj.05-5360comDOI Listing
July 2006

The JNK are important for development and survival of macrophages.

J Immunol 2006 Feb;176(4):2219-28

Cooperative Research Centre for Chronic Inflammatory Disease, Institute for Molecular Biosciences, University of Queensland, Brisbane, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.4049/jimmunol.176.4.2219DOI Listing
February 2006

Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome.

Genome Res 2006 Jan 12;16(1):11-9. Epub 2005 Dec 12.

ARC Special Research Centre for Functional and Applied Genomics, Institute for Molecular Bioscience, University of Queensland, Brisbane QLD 4072, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1101/gr.4200206DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1356124PMC
January 2006

LPS regulates a set of genes in primary murine macrophages by antagonising CSF-1 action.

Immunobiology 2005 ;210(2-4):97-107

Cooperative Research Centre for Chronic Inflammatory Diseases, Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland 4072, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.imbio.2005.05.004DOI Listing
October 2005