Publications by authors named "Timothy Hancock"

18Publications

Putative bovine topological association domains and CTCF binding motifs can reduce the search space for causative regulatory variants of complex traits.

Authors:
Min Wang Timothy P Hancock Amanda J Chamberlain Christy J Vander Jagt Jennie E Pryce Benjamin G Cocks Mike E Goddard Benjamin J Hayes

BMC Genomics 2018 May 24;19(1):395. Epub 2018 May 24.

AgriBio, Centre for AgriBioscience, Agriculture Victoria, Melbourne, VIC, Australia.

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May 2018

Putative enhancer sites in the bovine genome are enriched with variants affecting complex traits.

Authors:
Min Wang Timothy P Hancock Iona M MacLeod Jennie E Pryce Benjamin G Cocks Benjamin J Hayes

Genet Sel Evol 2017 07 6;49(1):56. Epub 2017 Jul 6.

Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC, 3083, Australia.

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July 2017

Computational recognition for long non-coding RNA (lncRNA): Software and databases.

Authors:
Sohiya Yotsukura David duVerle Timothy Hancock Yayoi Natsume-Kitatani Hiroshi Mamitsuka

Brief Bioinform 2017 01 2;18(1):9-27. Epub 2016 Feb 2.

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January 2017

NetPathMiner: R/Bioconductor package for network path mining through gene expression.

Authors:
Ahmed Mohamed Timothy Hancock Canh Hao Nguyen Hiroshi Mamitsuka

Bioinformatics 2014 Nov 28;30(21):3139-41. Epub 2014 Jul 28.

Bioinformatics Center, Institute for Chemical Research, Kyoto University, Gokasho, Uji, Japan and Department of Computing and Information Systems, The University of Melbourne, Victoria, Australia.

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November 2014

Nuclear magnetic resonance metabonomic profiling using tO2PLS.

Authors:
Gemma M Kirwan Timothy Hancock Kathryn Hassell Julie O Niere Dayanthi Nugegoda Susumu Goto Michael J Adams

Anal Chim Acta 2013 Jun 17;781:33-40. Epub 2013 Apr 17.

Department of Chemistry, School of Applied Sciences, RMIT University, City Campus, Vic 3001, Australia.

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June 2013

Identifying pathways of coordinated gene expression.

Authors:
Timothy Hancock Ichigaku Takigawa Hiroshi Mamitsuka

Methods Mol Biol 2013 ;939:69-85

Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Japan.

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June 2013

Boosted network classifiers for local feature selection.

Authors:
Timothy Hancock Hiroshi Mamitsuka

IEEE Trans Neural Netw Learn Syst 2012 Nov;23(11):1767-78

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November 2012

Identifying neighborhoods of coordinated gene expression and metabolite profiles.

Authors:
Timothy Hancock Nicolas Wicker Ichigaku Takigawa Hiroshi Mamitsuka

PLoS One 2012 15;7(2):e31345. Epub 2012 Feb 15.

Bioinformatics Center, Kyoto University, Kyoto, Japan.

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June 2012

Experimental infection of horses with Hendra virus/Australia/horse/2008/Redlands.

Authors:
Glenn A Marsh Jessica Haining Timothy J Hancock Rachel Robinson Adam J Foord Jennifer A Barr Shane Riddell Hans G Heine John R White Gary Crameri Hume E Field Lin-Fa Wang Deborah Middleton

Emerg Infect Dis 2011 Dec;17(12):2232-8

Commonwealth Scientific and Industrial Research Organization Livestock Industries, Geelong, Victoria, Australia.

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December 2011

Mining metabolic pathways through gene expression.

Authors:
Timothy Hancock Ichigaku Takigawa Hiroshi Mamitsuka

Bioinformatics 2010 Sep 29;26(17):2128-35. Epub 2010 Jun 29.

Bioinformatics Center, Institute for Chemical Research, Kyoto University, Japan.

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September 2010

Active pathway identification and classification with probabilistic ensembles.

Authors:
Timothy Hancock Hiroshi Mamitsuka

Genome Inform 2010 Jan;22:30-40

Bioinformatics Center, Institute for Chemical Research, Kyoto University, Kyoto, Japan.

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January 2010

A markov classification model for metabolic pathways.

Authors:
Timothy Hancock Hiroshi Mamitsuka

Algorithms Mol Biol 2010 Jan 4;5:10. Epub 2010 Jan 4.

Bioinformatics Center, Institute for Chemical Research, Kyoto University, Japan.

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January 2010

A neutralizing human monoclonal antibody protects against lethal disease in a new ferret model of acute nipah virus infection.

Authors:
Katharine N Bossart Zhongyu Zhu Deborah Middleton Jessica Klippel Gary Crameri John Bingham Jennifer A McEachern Diane Green Timothy J Hancock Yee-Peng Chan Andrew C Hickey Dimiter S Dimitrov Lin-Fa Wang Christopher C Broder

PLoS Pathog 2009 Oct 30;5(10):e1000642. Epub 2009 Oct 30.

CSIRO Livestock Industries, Australian Animal Health Laboratory, Geelong, Victoria, Australia.

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October 2009

Semi-supervised graph partitioning with decision trees.

Authors:
Timothy Hancock Hiroshi Mamitsuka

Genome Inform 2008 ;20:102-11

Bioinformatics Center, Institute for Chemical Research, Kyoto University, Kyoto, Japan.

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July 2009

A portable handpump is effective in the evacuation of hemothorax in a swine model of penetrating chest injury.

Authors:
Amin Jaskille Peter Rhee Elena Koustova Timothy Hancock Ryan Inocencio Troy A Lewis Adam Seufert Hasan B Alam

J Trauma 2003 Nov;55(5):864-8

Department of Surgery, Uniformed Services University of the Health Sciences, 4301 Jones Bridge Road, Bethesda, MD 20814, USA.

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November 2003

Ketone and pyruvate Ringer's solutions decrease pulmonary apoptosis in a rat model of severe hemorrhagic shock and resuscitation.

Authors:
Elena Koustova Peter Rhee Timothy Hancock Huazhen Chen Ryan Inocencio Amin Jaskille William Hanes C Robert Valeri Hasan B Alam

Surgery 2003 Aug;134(2):267-74

Department of Surgery, Uniformed Services University of the Health Sciences, Bethesda, MD 20814, USA.

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August 2003

Comparative analysis of hemostatic agents in a swine model of lethal groin injury.

Authors:
Hasan B Alam Gemma B Uy Dana Miller Elena Koustova Timothy Hancock Ryan Inocencio Daniel Anderson Orlando Llorente Peter Rhee

J Trauma 2003 Jun;54(6):1077-82

Department of Surgery, Uniformed Services University of the Health Sciences, Bethesda, Maryland 20814, USA.

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June 2003

Learning and memory is preserved after induced asanguineous hyperkalemic hypothermic arrest in a swine model of traumatic exsanguination.

Authors:
Hasan B Alam Mark W Bowyer Elena Koustova Vadim Gushchin Daniel Anderson Kathleen Stanton Peter Kreishman Chad M t Cryer Timothy Hancock Peter Rhee

Surgery 2002 Aug;132(2):278-88

Department of Surgery, Uniformed Services University of the Health Sciences, Bethesda, Md 20814, USA.

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August 2002