Timothy B Stockwell

Timothy B Stockwell

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Timothy B Stockwell

Timothy B Stockwell

Publications by authors named "Timothy B Stockwell"

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Genetic stability of foot-and-mouth disease virus during long-term infections in natural hosts.

PLoS One 2018 1;13(2):e0190977. Epub 2018 Feb 1.

Foreign Animal Disease Research Unit, Agricultural Research Service, Plum Island Animal Disease Center, New York, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0190977PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5794060PMC
March 2018

Evolution and spread of Venezuelan equine encephalitis complex alphavirus in the Americas.

PLoS Negl Trop Dis 2017 Aug 3;11(8):e0005693. Epub 2017 Aug 3.

Institute for Human Infections and Immunity, Department of Pathology and Department of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas, United States of America.

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http://dx.plos.org/10.1371/journal.pntd.0005693
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http://dx.doi.org/10.1371/journal.pntd.0005693DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5557581PMC
August 2017

Degenerate primer design for highly variable genomes.

Methods Mol Biol 2015 ;1275:103-15

The J. Craig Venter Institute, Rockville, MD, USA,

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http://link.springer.com/10.1007/978-1-4939-2365-6_7
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http://dx.doi.org/10.1007/978-1-4939-2365-6_7DOI Listing
December 2015

SISPA-Seq for rapid whole genome surveys of bacterial isolates.

Infect Genet Evol 2015 Jun 19;32:191-8. Epub 2015 Mar 19.

J. Craig Venter Institute, La Jolla, CA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.meegid.2015.03.018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5556377PMC
June 2015

Whole genome analyses of G1P[8] rotavirus strains from vaccinated and non-vaccinated South African children presenting with diarrhea.

J Med Virol 2015 Jan 20;87(1):79-101. Epub 2014 May 20.

Medical Research Council/Diarrhoeal Pathogens Research Unit, Department of Virology, University of Limpopo, Medunsa Campus/National Health Laboratory Service, Pretoria, South Africa.

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http://dx.doi.org/10.1002/jmv.23971DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5831395PMC
January 2015

Deep sequencing identifies noncanonical editing of Ebola and Marburg virus RNAs in infected cells.

MBio 2014 Nov 4;5(6):e02011. Epub 2014 Nov 4.

Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, New York, USA

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http://dx.doi.org/10.1128/mBio.02011-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4222107PMC
November 2014

Whole-genome analyses of DS-1-like human G2P[4] and G8P[4] rotavirus strains from Eastern, Western and Southern Africa.

Virus Genes 2014 Oct 22;49(2):196-207. Epub 2014 Jun 22.

South African Medical Research Council/UL Diarrhoeal Pathogens Research Unit (MRC/DPRU), Department of Virology, University of Limpopo (Medunsa Campus) and National Health Laboratory Service, PO Box 173, Medunsa, Pretoria, 0204, South Africa.

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http://dx.doi.org/10.1007/s11262-014-1091-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5818712PMC
October 2014

Characterization of uncultivable bat influenza virus using a replicative synthetic virus.

PLoS Pathog 2014 Oct 2;10(10):e1004420. Epub 2014 Oct 2.

Department of Diagnostic Medicine/Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan, Kansas, United States of America.

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http://dx.doi.org/10.1371/journal.ppat.1004420DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4183581PMC
October 2014

The evolutionary dynamics of influenza A and B viruses in the tropical city of Managua, Nicaragua.

Virology 2014 Aug 22;462-463:81-90. Epub 2014 Jun 22.

Division of Infectious Diseases and Vaccinology, USA; Division of Epidemiology, School of Public Health, University of California, Berkeley, CA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.virol.2014.05.025DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4175446PMC
August 2014

Evaluation of phenotypic markers in full genome sequences of avian influenza isolates from California.

Comp Immunol Microbiol Infect Dis 2013 Sep 26;36(5):521-36. Epub 2013 Jul 26.

Department of Pathology, Microbiology and Immunology, School of Veterinary Medicine, University of California, One Shields Avenue, Davis, CA 95616, USA.

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http://dx.doi.org/10.1016/j.cimid.2013.06.003DOI Listing
September 2013

VIGOR extended to annotate genomes for additional 12 different viruses.

Nucleic Acids Res 2012 Jul 4;40(Web Server issue):W186-92. Epub 2012 Jun 4.

J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA.

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http://dx.doi.org/10.1093/nar/gks528DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3394299PMC
July 2012

Temporally structured metapopulation dynamics and persistence of influenza A H3N2 virus in humans.

Proc Natl Acad Sci U S A 2011 Nov 14;108(48):19359-64. Epub 2011 Nov 14.

Department of Microbiology, State Key Laboratory of Emerging Infectious Diseases, University of Hong Kong, Pokfulam, Hong Kong Special Admnistrative Region, China.

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http://dx.doi.org/10.1073/pnas.1109314108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3228450PMC
November 2011

VariantClassifier: A hierarchical variant classifier for annotated genomes.

BMC Res Notes 2010 Jul 13;3:191. Epub 2010 Jul 13.

The J, Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA.

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http://bmcresnotes.biomedcentral.com/articles/10.1186/1756-0
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http://dx.doi.org/10.1186/1756-0500-3-191DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913924PMC
July 2010

ANDES: Statistical tools for the ANalyses of DEep Sequencing.

BMC Res Notes 2010 Jul 15;3:199. Epub 2010 Jul 15.

The J, Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA.

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http://dx.doi.org/10.1186/1756-0500-3-199DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2921379PMC
July 2010

Infidelity of SARS-CoV Nsp14-exonuclease mutant virus replication is revealed by complete genome sequencing.

PLoS Pathog 2010 May 6;6(5):e1000896. Epub 2010 May 6.

Department of Pediatrics and Microbiology and Immunology and Elizabeth B. Lamb Center for Pediatric Research, Vanderbilt University Medical Center, Nashville, Tennessee, USA.

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http://dx.doi.org/10.1371/journal.ppat.1000896DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2865531PMC
May 2010

Evaluation of next generation sequencing platforms for population targeted sequencing studies.

Genome Biol 2009 27;10(3):R32. Epub 2009 Mar 27.

Scripps Genomic Medicine, Scripps Translational Science Institute, The Scripps Research Institute, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1186/gb-2009-10-3-r32DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2691003PMC
July 2009

The HuRef Browser: a web resource for individual human genomics.

Nucleic Acids Res 2009 Jan 26;37(Database issue):D1018-24. Epub 2008 Nov 26.

J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA.

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http://dx.doi.org/10.1093/nar/gkn939DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686481PMC
January 2009

Novel computational methods for increasing PCR primer design effectiveness in directed sequencing.

BMC Bioinformatics 2008 Apr 11;9:191. Epub 2008 Apr 11.

The J, Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA.

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http://dx.doi.org/10.1186/1471-2105-9-191DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2396641PMC
April 2008

Mechanism of chimera formation during the Multiple Displacement Amplification reaction.

BMC Biotechnol 2007 Apr 12;7:19. Epub 2007 Apr 12.

J. Craig Venter Institute, Rockville, MD 20850, USA.

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http://dx.doi.org/10.1186/1472-6750-7-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1855051PMC
April 2007