Publications by authors named "Tim de Meyer"

88Publications

Molecular insights into the compatible and incompatible interactions between sugar beet and the beet cyst nematode.

BMC Plant Biol 2020 Oct 22;20(1):483. Epub 2020 Oct 22.

Department of Biotechnology, Ghent University, Coupure Links 653, B-9000, Ghent, Belgium.

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October 2020

Genome-wide DNA hypomethylation shapes nematode pattern-triggered immunity in plants.

New Phytol 2020 07 23;227(2):545-558. Epub 2020 Apr 23.

Department of Biotechnology, Ghent University, B-9000, Ghent, Belgium.

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July 2020

Underestimated effect of intragenic HIV-1 DNA methylation on viral transcription in infected individuals.

Clin Epigenetics 2020 02 28;12(1):36. Epub 2020 Feb 28.

HIV Cure Research Center, Department of Internal Medicine and Pediatrics, Faculty of Medicine and Health Sciences, Ghent University and Ghent University Hospital, Corneel Heymanslaan 10, Medical Research Building 2, 9000, Ghent, Belgium.

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February 2020

Selection of miRNA reference genes for plant defence studies in rice (Oryza sativa).

Planta 2019 Dec 3;250(6):2101-2110. Epub 2019 Oct 3.

Department of Data Analysis and Mathematical Modelling, Ghent University, Ghent, Belgium.

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December 2019

MEXPRESS update 2019.

Nucleic Acids Res 2019 07;47(W1):W561-W565

Department of Data Analysis and Mathematical Modelling, Ghent University, 9000 Ghent, Belgium.

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July 2019

Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.

Authors:
Alexander Teumer Layal Chaker Stefan Groeneweg Yong Li Celia Di Munno Caterina Barbieri Ulla T Schultheiss Michela Traglia Tarunveer S Ahluwalia Masato Akiyama Emil Vincent R Appel Dan E Arking Alice Arnold Arne Astrup Marian Beekman John P Beilby Sofie Bekaert Eric Boerwinkle Suzanne J Brown Marc De Buyzere Purdey J Campbell Graziano Ceresini Charlotte Cerqueira Francesco Cucca Ian J Deary Joris Deelen Kai-Uwe Eckardt Arif B Ekici Johan G Eriksson Luigi Ferrrucci Tom Fiers Edoardo Fiorillo Ian Ford Caroline S Fox Christian Fuchsberger Tessel E Galesloot Christian Gieger Martin Gögele Alessandro De Grandi Niels Grarup Karin Halina Greiser Kadri Haljas Torben Hansen Sarah E Harris Diana van Heemst Martin den Heijer Andrew A Hicks Wouter den Hollander Georg Homuth Jennie Hui M Arfan Ikram Till Ittermann Richard A Jensen Jiaojiao Jing J Wouter Jukema Eero Kajantie Yoichiro Kamatani Elisa Kasbohm Jean-Marc Kaufman Lambertus A Kiemeney Margreet Kloppenburg Florian Kronenberg Michiaki Kubo Jari Lahti Bruno Lapauw Shuo Li David C M Liewald Ee Mun Lim Allan Linneberg Michela Marina Deborah Mascalzoni Koichi Matsuda Daniel Medenwald Christa Meisinger Ingrid Meulenbelt Tim De Meyer Henriette E Meyer Zu Schwabedissen Rafael Mikolajczyk Matthijs Moed Romana T Netea-Maier Ilja M Nolte Yukinori Okada Mauro Pala Cristian Pattaro Oluf Pedersen Astrid Petersmann Eleonora Porcu Iris Postmus Peter P Pramstaller Bruce M Psaty Yolande F M Ramos Rajesh Rawal Paul Redmond J Brent Richards Ernst R Rietzschel Fernando Rivadeneira Greet Roef Jerome I Rotter Cinzia F Sala David Schlessinger Elizabeth Selvin P Eline Slagboom Nicole Soranzo Thorkild I A Sørensen Timothy D Spector John M Starr David J Stott Youri Taes Daniel Taliun Toshiko Tanaka Betina Thuesen Daniel Tiller Daniela Toniolo Andre G Uitterlinden W Edward Visser John P Walsh Scott G Wilson Bruce H R Wolffenbuttel Qiong Yang Hou-Feng Zheng Anne Cappola Robin P Peeters Silvia Naitza Henry Völzke Serena Sanna Anna Köttgen Theo J Visser Marco Medici

Nat Commun 2018 10 26;9(1):4455. Epub 2018 Oct 26.

Erasmus MC Academic Center for Thyroid Diseases, Rotterdam, The Netherlands.

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October 2018

A comprehensive overview of genomic imprinting in breast and its deregulation in cancer.

Nat Commun 2018 10 8;9(1):4120. Epub 2018 Oct 8.

Department Data Analysis and Mathematical Modelling, Ghent University, Coupure Links 653, 9000, Ghent, Belgium.

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October 2018

Exploratory analysis of the human breast DNA methylation profile upon soymilk exposure.

Sci Rep 2018 09 11;8(1):13617. Epub 2018 Sep 11.

Department of Data Analysis and Mathematical Modelling, Faculty of Bioscience Engineering, Ghent University, Belgium, Coupure Links 653, B-9000, Ghent, Belgium.

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September 2018

Telomere Length as Cardiovascular Aging Biomarker: JACC Review Topic of the Week.

J Am Coll Cardiol 2018 08;72(7):805-813

Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid, Spain; CIBER de Enfermedades Cardiovasculares (CIBER-CV), Madrid, Spain.

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August 2018

Author Correction: Analysis of DNA methylation in cancer: location revisited.

Nat Rev Clin Oncol 2018 07;15(7):467

Department of Pathology, GROW - School for Oncology and Developmental Biology, Maastricht University Medical Center, Maastricht, Netherlands.

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July 2018

Analysis of DNA methylation in cancer: location revisited.

Nat Rev Clin Oncol 2018 07;15(7):459-466

Department of Pathology, GROW - School for Oncology and Developmental Biology, Maastricht University Medical Center, Maastricht, Netherlands.

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July 2018

Letter by De Meyer Regarding Article, "Short Leukocyte Telomere Length Precedes Clinical Expression of Atherosclerosis: The Blood-and-Muscle Model".

Authors:
Tim De Meyer

Circ Res 2018 04;122(8):e71-e72

Department of Data Analysis and Mathematical Modelling, Ghent University, Belgium.

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April 2018

Telomeres and Atherosclerosis: The Intricate Pursuit of Mechanistic Insight Through Epidemiology.

Hypertension 2017 08 19;70(2):243-244. Epub 2017 Jun 19.

From the Department of Mathematical Modelling, Statistics and Bioinformatics, Faculty of Bioscience Engineering, Ghent University, Belgium; and Department of Cardiovascular Diseases, Ghent University Hospital, Belgium.

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August 2017

Below-Ground Attack by the Root Knot Nematode Meloidogyne graminicola Predisposes Rice to Blast Disease.

Mol Plant Microbe Interact 2017 03 29;30(3):255-266. Epub 2017 Mar 29.

1 Department Molecular Biotechnology, Ghent University, Coupure links 653, B-9000 Ghent, Belgium.

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March 2017

Epigenetic sampling effects: nephrectomy modifies the clear cell renal cell cancer methylome.

Cell Oncol (Dordr) 2017 Jun 10;40(3):293-297. Epub 2017 Jan 10.

Biobix: Laboratory of Bioinformatics and Computational Genomics, Department of Mathematical Modeling, Statistics and Bioninformatics, Ghent University, Coupure Links 653, 9000, Ghent, Belgium.

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June 2017

Genome-wide methylome analysis using MethylCap-seq uncovers 4 hypermethylated markers with high sensitivity for both adeno- and squamous-cell cervical carcinoma.

Oncotarget 2016 Dec;7(49):80735-80750

Department of Gynecologic Oncology, University of Groningen, University Medical Centre Groningen, Cancer Research Centre Groningen, Groningen, The Netherlands.

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December 2016

Identification of long non-coding RNAs involved in neuronal development and intellectual disability.

Sci Rep 2016 06 20;6:28396. Epub 2016 Jun 20.

Center for Medical Genetics, Ghent University, Ghent University Hospital, Ghent, Belgium.

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June 2016

Telomeres and Atherosclerosis: The Attrition of an Attractive Hypothesis.

J Am Coll Cardiol 2016 05;67(21):2477-9

Faculty of Bioscience Engineering, Department of Mathematical Modelling, Statistics and Bioinformatics, Ghent University, Ghent, Belgium.

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May 2016

MEXPRESS: visualizing expression, DNA methylation and clinical TCGA data.

BMC Genomics 2015 Aug 26;16:636. Epub 2015 Aug 26.

Department of Mathematical Modeling, Statistics and Bioinformatics, Ghent University, Ghent, Belgium.

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August 2015

Mining for viral fragments in methylation enriched sequencing data.

Front Genet 2015 4;6:16. Epub 2015 Feb 4.

Department of Mathematical Modeling, Statistics and Bioinformatics, Ghent University Ghent, Belgium.

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February 2015

PROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration.

Nucleic Acids Res 2015 Mar 15;43(5):e29. Epub 2014 Dec 15.

Lab of Bioinformatics and Computational Genomics, Department of Mathematical Modeling, Statistics and Bioinformatics, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium

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March 2015

SNP-guided identification of monoallelic DNA-methylation events from enrichment-based sequencing data.

Nucleic Acids Res 2014 Nov 18;42(20):e157. Epub 2014 Sep 18.

Department of Mathematical Modelling, Statistics and Bioinformatics, University of Ghent, Ghent 9000, Belgium.

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November 2014

Systemic suppression of the shoot metabolism upon rice root nematode infection.

PLoS One 2014 12;9(9):e106858. Epub 2014 Sep 12.

Department of Mathematical Modelling, Statistics and Bioinformatics, Ghent University, Ghent, Belgium.

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May 2015

Possible technical and biological explanations for the 'parental telomere length inheritance discrepancy' enigma.

Eur J Hum Genet 2015 Jan 23;23(1):3-4. Epub 2014 Apr 23.

1] Department of Anthropology, University of Washington, Seattle, WA, USA [2] Center for Studies in Demography and Ecology, University of Washington, Seattle, WA, USA.

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January 2015

Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.

Authors:
Marco Medici Eleonora Porcu Giorgio Pistis Alexander Teumer Suzanne J Brown Richard A Jensen Rajesh Rawal Greet L Roef Theo S Plantinga Sita H Vermeulen Jari Lahti Matthew J Simmonds Lise Lotte N Husemoen Rachel M Freathy Beverley M Shields Diana Pietzner Rebecca Nagy Linda Broer Layal Chaker Tim I M Korevaar Maria Grazia Plia Cinzia Sala Uwe Völker J Brent Richards Fred C Sweep Christian Gieger Tanguy Corre Eero Kajantie Betina Thuesen Youri E Taes W Edward Visser Andrew T Hattersley Jürgen Kratzsch Alexander Hamilton Wei Li Georg Homuth Monia Lobina Stefano Mariotti Nicole Soranzo Massimiliano Cocca Matthias Nauck Christin Spielhagen Alec Ross Alice Arnold Martijn van de Bunt Sandya Liyanarachchi Margit Heier Hans Jörgen Grabe Corrado Masciullo Tessel E Galesloot Ee M Lim Eva Reischl Peter J Leedman Sandra Lai Alessandro Delitala Alexandra P Bremner David I W Philips John P Beilby Antonella Mulas Matteo Vocale Goncalo Abecasis Tom Forsen Alan James Elisabeth Widen Jennie Hui Holger Prokisch Ernst E Rietzschel Aarno Palotie Peter Feddema Stephen J Fletcher Katharina Schramm Jerome I Rotter Alexander Kluttig Dörte Radke Michela Traglia Gabriela L Surdulescu Huiling He Jayne A Franklyn Daniel Tiller Bijay Vaidya Tim de Meyer Torben Jørgensen Johan G Eriksson Peter C O'Leary Eric Wichmann Ad R Hermus Bruce M Psaty Till Ittermann Albert Hofman Emanuele Bosi David Schlessinger Henri Wallaschofski Nicola Pirastu Yurii S Aulchenko Albert de la Chapelle Romana T Netea-Maier Stephen C L Gough Henriette Meyer Zu Schwabedissen Timothy M Frayling Jean-Marc Kaufman Allan Linneberg Katri Räikkönen Johannes W A Smit Lambertus A Kiemeney Fernando Rivadeneira André G Uitterlinden John P Walsh Christa Meisinger Martin den Heijer Theo J Visser Timothy D Spector Scott G Wilson Henry Völzke Anne Cappola Daniela Toniolo Serena Sanna Silvia Naitza Robin P Peeters

PLoS Genet 2014 Feb 27;10(2):e1004123. Epub 2014 Feb 27.

Department of Internal Medicine, Erasmus Medical Center Rotterdam, Rotterdam, The Netherlands.

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February 2014

Rapid genetic adaptation precedes the spread of an exotic plant species.

Mol Ecol 2014 May 21;23(9):2157-64. Epub 2014 Mar 21.

Plant Conservation and Population Biology, Biology Department, University of Leuven, Kasteelpark Arenberg 31, B-3001, Heverlee, Belgium.

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May 2014

Staphylococcal enterotoxin B influences the DNA methylation pattern in nasal polyp tissue: a preliminary study.

Allergy Asthma Clin Immunol 2013 Dec 16;9(1):48. Epub 2013 Dec 16.

Upper Airways Research Laboratory, Department of Otorhinolaryngology, Ghent University Hospital, De Pintelaan 185, Ghent B-9000, Belgium.

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December 2013

Next-generation technologies and data analytical approaches for epigenomics.

Environ Mol Mutagen 2014 Apr 10;55(3):155-70. Epub 2013 Dec 10.

Department of Mathematical Modelling, Statistics and Bioinformatics, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium.

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April 2014

A non-genetic, epigenetic-like mechanism of telomere length inheritance?

Eur J Hum Genet 2014 Jan 23;22(1):10-1. Epub 2013 Oct 23.

Bimetra, Clinical Research Center Ghent, Ghent University Hospital, Ghent, Belgium.

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January 2014

The effect of VEGF-targeted therapy on biomarker expression in sequential tissue from patients with metastatic clear cell renal cancer.

Clin Cancer Res 2013 Dec 15;19(24):6924-34. Epub 2013 Oct 15.

Authors' Affiliations: Barts Cancer Institute, Queen Mary University of London; Experimental Cancer Medicine Centre, University College; The Institute of Cancer Research; Guys and St Thomas' Hospital; The Royal Free Hospital London, London; Edinburgh Urological Cancer Group, University of Edinburgh, Edinburgh; Astra Zeneca, Manchester; School of Medicine, University of St Andrews, Fife, United Kingdom; National Cancer Institute, Amsterdam, the Netherlands; and University of Ghent, Ghent, Belgium.

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December 2013

The CpG island methylator phenotype: what's in a name?

Cancer Res 2013 Oct 25;73(19):5858-68. Epub 2013 Jun 25.

Authors' Affiliations: Departments of Epidemiology and Pathology, GROW-School for Oncology and Developmental Biology, Maastricht University Medical Center, Maastricht; Department of Surgery, Orbis Medical Center, Sittard-Geleen; Department of Pathology, Leiden University Medical Center, Leiden; Department of Neurology, Erasmus University Medical Center, Erasmus University, Rotterdam, the Netherlands; Department of Mathematical Modeling, Statistics and Bioinformatics, Ghent University, Ghent, Belgium; and The Johns Hopkins University School of Medicine, Baltimore, Maryland.

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October 2013

Coronary spasm after the topical use of cocaine in nasal surgery.

Am J Case Rep 2013 18;14:76-9. Epub 2013 Mar 18.

Department of Cardiology, University Hospital Antwerp, Edegem, Belgium.

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April 2013

Quality evaluation of methyl binding domain based kits for enrichment DNA-methylation sequencing.

PLoS One 2013 15;8(3):e59068. Epub 2013 Mar 15.

Department of Mathematical Modelling, Statistics and Bioinformatics, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium.

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October 2013

The impact of extensive clonal growth on fine-scale mating patterns: a full paternity analysis of a lily-of-the-valley population (Convallaria majalis).

Ann Bot 2013 Apr 24;111(4):623-8. Epub 2013 Feb 24.

Plant Conservation and Population Biology, Biology Department, University of Leuven, Kasteelpark Arenberg 31, Heverlee, Belgium.

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April 2013

Transcriptional reprogramming by root knot and migratory nematode infection in rice.

New Phytol 2012 Nov 17;196(3):887-900. Epub 2012 Sep 17.

Department of Molecular Biotechnology, Ghent University (UGent), Ghent, Belgium.

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November 2012

Transcriptome analysis of rice mature root tissue and root tips in early development by massive parallel sequencing.

J Exp Bot 2012 Mar 2;63(5):2141-57. Epub 2012 Jan 2.

Department of Molecular Biotechnology, Ghent University, Coupure Links 653, Ghent, Belgium.

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March 2012

Common genetic variation in the 3'-BCL11B gene desert is associated with carotid-femoral pulse wave velocity and excess cardiovascular disease risk: the AortaGen Consortium.

Circ Cardiovasc Genet 2012 Feb 8;5(1):81-90. Epub 2011 Nov 8.

Cardiovascular Engineering Inc., 1 Edgewater Drive, Norwood, MA 02062, USA.

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February 2012

Response to low-dose X-irradiation is p53-dependent in a papillary thyroid carcinoma model system.

Int J Oncol 2011 Dec 29;39(6):1429-41. Epub 2011 Aug 29.

Laboratory of Molecular and Cellular Biology, Radiobiology Unit, Belgian Nuclear Research Center (SCK-CEN), 2400 Mol, Belgium.

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December 2011

Telomere length and cardiovascular aging: the means to the ends?

Ageing Res Rev 2011 Apr 23;10(2):297-303. Epub 2010 Nov 23.

Dept. of Molecular Biotechnology, FBE, Ghent University, Belgium.

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April 2011

Evaluation of standard and advanced preprocessing methods for the univariate analysis of blood serum 1H-NMR spectra.

Anal Bioanal Chem 2010 Oct 17;398(4):1781-90. Epub 2010 Aug 17.

Laboratory for Bioinformatics and Computational Genomics, Department of Molecular Biotechnology, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, 9000 Ghent, Belgium.

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October 2010

High content analysis of human fibroblast cell cultures after exposure to space radiation.

Radiat Res 2009 Oct;172(4):423-36

Laboratory for Bio-Imaging and Molecular Cytology, Department of Molecular Biotechnology, Ghent University, 9000 Gent, Belgium.

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October 2009

NMR-based characterization of metabolic alterations in hypertension using an adaptive, intelligent binning algorithm.

Anal Chem 2008 May 18;80(10):3783-90. Epub 2008 Apr 18.

Department of Molecular Biotechnology, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, B-9000 Ghent, Belgium.

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May 2008

Studying telomeres in a longitudinal population based study.

Front Biosci 2008 Jan 1;13:2960-70. Epub 2008 Jan 1.

Department of Molecular Biotechnology, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium.

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January 2008

PubMeth: a cancer methylation database combining text-mining and expert annotation.

Nucleic Acids Res 2008 Jan 11;36(Database issue):D842-6. Epub 2007 Oct 11.

Department of Molecular Biotechnology, Faculty of Bioscience Engineering, Laboratory for Bioinformatics and Computational Genomics, Ghent University, B-9000 Ghent, Belgium.

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January 2008

Paternal age at birth is an important determinant of offspring telomere length.

Hum Mol Genet 2007 Dec 19;16(24):3097-102. Epub 2007 Sep 19.

Department of Molecular Biotechnology, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, B-9000 Ghent, Belgium.

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December 2007

Telomere attrition as ageing biomarker.

Anticancer Res 2005 Jul-Aug;25(4):3011-21

Department of Molecular Biotechnology, Faculty for Bioscience Engineering, Ghent University, Belgium.

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September 2005

Telomere shortening is associated with malformation in p53-deficient mice after irradiation during specific stages of development.

DNA Repair (Amst) 2005 Aug;4(9):1028-37

Laboratory for Biochemistry and Molecular Cytology, Department for Molecular Biotechnology, Faculty of Bioscience Engineering FBE, Ghent University, Belgium.

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August 2005