Publications by authors named "Tim E A Peto"

65Publications

Evaluation of methods for detecting human reads in microbial sequencing datasets.

Microb Genom 2020 07;6(7)

National Institute for Health Research Oxford Biomedical Research Centre, Oxford, UK.

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http://dx.doi.org/10.1099/mgen.0.000393DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7478626PMC
July 2020

Patient engagement with antibiotic messaging in secondary care: a qualitative feasibility study of the 'review and revise' experience.

Pilot Feasibility Stud 2020 4;6:43. Epub 2020 Apr 4.

1Centre for Clinical and Community Applications of Health Psychology, University of Southampton, Southampton, UK.

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http://dx.doi.org/10.1186/s40814-020-00590-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7126355PMC
April 2020

Selective culture enrichment and sequencing of feces to enhance detection of antimicrobial resistance genes in third-generation cephalosporin resistant Enterobacteriaceae.

PLoS One 2019 8;14(11):e0222831. Epub 2019 Nov 8.

National Institute for Health Research (NIHR) Health Protection Research Unit on Healthcare Associated Infections and Antimicrobial Resistance, John Radcliffe Hospital, Oxford, England, United Kingdom.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0222831PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6839868PMC
March 2020

Hash-Based Core Genome Multilocus Sequence Typing for Clostridium difficile.

J Clin Microbiol 2019 12 23;58(1). Epub 2019 Dec 23.

Healthcare Associated Infections Research Group, University of Leeds, Leeds, United Kingdom.

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http://dx.doi.org/10.1128/JCM.01037-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6935933PMC
December 2019

Using hospital network-based surveillance for antimicrobial resistance as a more robust alternative to self-reporting.

PLoS One 2019 25;14(7):e0219994. Epub 2019 Jul 25.

The National Institute for Health Research (NIHR) Health Protection Research Unit in Healthcare Associated Infections and Antimicrobial Resistance, University of Oxford, Oxford, United Kingdom.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0219994PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6657867PMC
March 2020

A Candida auris Outbreak and Its Control in an Intensive Care Setting.

N Engl J Med 2018 10;379(14):1322-1331

From Oxford University Hospitals NHS Foundation Trust (D.W.E., H.M., I.M., R.M., L.B., M.M., R.N., M.S., T.C., T.E.A.P., D.W.C., K.J.M.J.) and Nuffield Department of Medicine (D.W.E., A.E.S., T.P.Q., D.G., S.G., D.F., A.S.W., T.E.A.P., D.W.C.), Big Data Institute (D.W.E.), and the National Institute for Health Research Health Protection Unit in Healthcare Associated Infections and Antimicrobial Resistance (D.W.E., A.E.S., T.P.Q., A.S.W., T.E.A.P., D.W.C.), University of Oxford, Oxford, Public Health England, National Infection Service, Colindale, London (P.H., C.S.B., D.W.C.), the National Mycology Reference Laboratory, Public Health England, Bristol (A.M.B., E.M.J.), and Public Health England, Porton Down, Salisbury (G.M.) - all in the United Kingdom.

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http://dx.doi.org/10.1056/NEJMoa1714373DOI Listing
October 2018

Prediction of Susceptibility to First-Line Tuberculosis Drugs by DNA Sequencing.

N Engl J Med 2018 10 26;379(15):1403-1415. Epub 2018 Sep 26.

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http://dx.doi.org/10.1056/NEJMoa1800474DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6121966PMC
October 2018

Trends over time in Escherichia coli bloodstream infections, urinary tract infections, and antibiotic susceptibilities in Oxfordshire, UK, 1998-2016: a study of electronic health records.

Lancet Infect Dis 2018 10 17;18(10):1138-1149. Epub 2018 Aug 17.

Nuffield Department of Clinical Medicine, University of Oxford, Oxford, UK; National Institute for Health Research (NIHR) Health Protection Research Unit on Healthcare Associated Infections and Antimicrobial Resistance, Oxford, UK.

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http://dx.doi.org/10.1016/S1473-3099(18)30353-0DOI Listing
October 2018

Robust Prediction of Resistance to Trimethoprim in Staphylococcus aureus.

Cell Chem Biol 2018 03 4;25(3):339-349.e4. Epub 2018 Jan 4.

Nuffield Department of Medicine, John Radcliffe Hospital, University of Oxford, Headley Way, Oxford OX3 9DU, UK.

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http://dx.doi.org/10.1016/j.chembiol.2017.12.009DOI Listing
March 2018

The antibiotic course has had its day.

BMJ 2017 07 26;358:j3418. Epub 2017 Jul 26.

Nuffield Department of Medicine, University of Oxford, UK.

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http://dx.doi.org/10.1136/bmj.j3418DOI Listing
July 2017

Mortality risks associated with emergency admissions during weekends and public holidays: an analysis of electronic health records.

Lancet 2017 07 9;390(10089):62-72. Epub 2017 May 9.

Oxford Biomedical Research Centre, John Radcliffe Hospital, Oxford, UK; Nuffield Department of Medicine, University of Oxford, John Radcliffe Hospital, Oxford, UK; Oxford University Hospitals NHS Foundation Trust, John Radcliffe Hospital, Oxford, UK.

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http://dx.doi.org/10.1016/S0140-6736(17)30782-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5494289PMC
July 2017

The relative importance of large problems far away versus small problems closer to home: insights into limiting the spread of antimicrobial resistance in England.

BMC Med 2017 04 27;15(1):86. Epub 2017 Apr 27.

The National Institute for Health Research (NIHR) Health Protection Research Unit in Healthcare Associated Infections and Antimicrobial Resistance, University of Oxford, Oxford, UK.

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http://dx.doi.org/10.1186/s12916-017-0844-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5406888PMC
April 2017

Mycobacterial DNA extraction for whole-genome sequencing from early positive liquid (MGIT) cultures.

J Clin Microbiol 2015 Apr 28;53(4):1137-43. Epub 2015 Jan 28.

Nuffield Department of Clinical Medicine, University of Oxford, John Radcliffe Hospital, Oxford, United Kingdom National Institute for Health Research Oxford Biomedical Research Centre, John Radcliffe Hospital, Oxford, United Kingdom.

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http://dx.doi.org/10.1128/JCM.03073-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4365189PMC
April 2015

Mobile elements drive recombination hotspots in the core genome of Staphylococcus aureus.

Nat Commun 2014 May 23;5:3956. Epub 2014 May 23.

1] Nuffield Department of Medicine, University of Oxford, John Radcliffe Hospital, Oxford OX3 9DU, UK [2] Wellcome Trust Centre for Human Genetics, Roosevelt Drive, Oxford OX3 7BN, UK.

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http://dx.doi.org/10.1038/ncomms4956DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4036114PMC
May 2014

Assessment of Mycobacterium tuberculosis transmission in Oxfordshire, UK, 2007-12, with whole pathogen genome sequences: an observational study.

Lancet Respir Med 2014 Apr 4;2(4):285-292. Epub 2014 Mar 4.

(T M Walker MRCP, T Golubchik PhD, A P Giess MSc, C Del Ojo Elias MSc, A S Walker PhD, Prof D W Crook FRCPath, Prof T E A Peto FRCP, C P Conlon FRCP); (T M Walker, M Morgan MSc, K J Jeffery FRCPath, I C J W Bowler FRCPath, Prof D W Crook, Prof T E A Peto, C P Conlon); (M K Lalor PhD, L F Anderson PhD, Prof I Abubakar FRCP, H L Thomas MFPH); (A Broda MRes Prof F Drobniewski FRCPath); (L Saldana Ortega MSc, N D McCarthy (DPhil); (L Parker BA, S Churchill BSc, K Bennett BA); (I F Laurenson FRCPath); (A Barrett BSc); (P Monk FFPHM); (E G Smith FRCPath); (A S Walker, Prof D W Crook, Prof T E A Peto); (Prof I Abubakar); (Prof F Drobniewski, A Broda).

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http://dx.doi.org/10.1016/S2213-2600(14)70027-XDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4571080PMC
April 2014

Asymptomatic Clostridium difficile colonisation and onward transmission.

PLoS One 2013 12;8(11):e78445. Epub 2013 Nov 12.

National Institute for Health Research Oxford Biomedical Research Centre, University of Oxford, Oxford, Oxfordshire, United Kingdom.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0078445PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3827041PMC
September 2014

Diverse sources of C. difficile infection identified on whole-genome sequencing.

N Engl J Med 2013 Sep;369(13):1195-205

Nuffield Department of Clinical Medicine (D.W.E., D.J.W., D.G., A.V., L.O., J.M.F., D.H.W., K.E.D., D.W.C., T.E.A.P., A.S.W.), and the Departments of Statistics (M.L.C., C.L.C.I., T.G., X.D., R.B.) and Zoology (R.M.H.), University of Oxford, the National Institute for Health Research (NIHR) Oxford Biomedical Research Centre, John Radcliffe Hospital (D.W.E., M.L.C., D.G., A.V., C.L.C.I., T.G., E.M.B., J.M.F., D.H.W., X.D., R.B., K.E.D., R.M.H., D.W.C., T.E.A.P., A.S.W.), Wellcome Trust Centre for Human Genetics (D.J.W., E.M.B., P.P., R.B.), and Oxford University Hospitals National Health Service Trust (L.O., D.W.C., T.E.A.P.), Oxford, the Leeds Teaching Hospitals and University of Leeds, Department of Microbiology, Leeds General Infirmary, Leeds (M.H.W.), and the Medical Research Council, Clinical Trials Unit, London (A.S.W.) - all in the United Kingdom.

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http://dx.doi.org/10.1056/NEJMoa1216064DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3868928PMC
September 2013

Detection of mixed infection from bacterial whole genome sequence data allows assessment of its role in Clostridium difficile transmission.

PLoS Comput Biol 2013 2;9(5):e1003059. Epub 2013 May 2.

Nuffield Department of Clinical Medicine, University of Oxford, John Radcliffe Hospital, Oxford, United Kingdom.

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http://dx.doi.org/10.1371/journal.pcbi.1003059DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3642043PMC
March 2014

Transforming clinical microbiology with bacterial genome sequencing.

Nat Rev Genet 2012 Sep 7;13(9):601-612. Epub 2012 Aug 7.

Nuffield Department of Clinical Medicine, University of Oxford, John Radcliffe Hospital, Oxford, OX3 9DU, UK.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5049685PMC
http://dx.doi.org/10.1038/nrg3226DOI Listing
September 2012

Increasing incidence of Escherichia coli bacteraemia is driven by an increase in antibiotic-resistant isolates: electronic database study in Oxfordshire 1999-2011.

J Antimicrob Chemother 2012 Jun 21;67(6):1514-24. Epub 2012 Mar 21.

NIHR Oxford Biomedical Research Centre, John Radcliffe Hospital, Oxford, UK.

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http://dx.doi.org/10.1093/jac/dks082DOI Listing
June 2012

Clostridium difficile mixed infection and reinfection.

J Clin Microbiol 2012 Jan 9;50(1):142-4. Epub 2011 Nov 9.

NIHR Oxford Biomedical Research Centre, John Radcliffe Hospital, Oxford, United Kingdom.

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http://dx.doi.org/10.1128/JCM.05177-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3256686PMC
January 2012

An efficient record linkage scheme using graphical analysis for identifier error detection.

BMC Med Inform Decis Mak 2011 Feb 1;11. Epub 2011 Feb 1.

NIHR Biomedical Research Centre, John Radcliffe Hospital, Oxford, UK.

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http://dx.doi.org/10.1186/1472-6947-11-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3039555PMC
February 2011

Fairness of financial penalties to improve control of Clostridium difficile.

BMJ 2008 Nov 20;337:a2097. Epub 2008 Nov 20.

National Institute for Health Research Oxford Biomedical Research Centre Programme, John Radcliffe Hospital, Oxford OX3 9DU.

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http://dx.doi.org/10.1136/bmj.a2097DOI Listing
November 2008

Diversity of antibiotic resistance integrative and conjugative elements among haemophili.

J Med Microbiol 2007 Jun;56(Pt 6):838-846

Infectious Diseases and Clinical Microbiology, John Radcliffe Hospital, University of Oxford, Oxford OX3 9DU, UK.

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http://dx.doi.org/10.1099/jmm.0.47125-0DOI Listing
June 2007

Mortality after Staphylococcus aureus bacteraemia in two hospitals in Oxfordshire, 1997-2003: cohort study.

BMJ 2006 Aug 23;333(7562):281. Epub 2006 Jun 23.

Nuffield Department of Clinical Laboratory Sciences, University of Oxford, John Radcliffe Hospital, Oxford OX3 9DU.

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http://dx.doi.org/10.1136/bmj.38834.421713.2FDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1526943PMC
August 2006

MRSA bacteraemia in patients on arrival in hospital: a cohort study in Oxfordshire 1997-2003.

BMJ 2005 Oct 9;331(7523):992. Epub 2005 Sep 9.

Nuffield Department of Clinical Laboratory Sciences, University of Oxford, John Radcliffe Hospital, Oxford OX3 9DU.

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http://dx.doi.org/10.1136/bmj.38558.453310.8FDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1273450PMC
October 2005

UGT1A1 variation and gallstone formation in sickle cell disease.

Blood 2005 Feb 23;105(3):968-72. Epub 2004 Sep 23.

Institute of Biological Anthropology and the Weatherall Institute of Molecular Medicine, University of Oxford, United Kingdom.

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http://dx.doi.org/10.1182/blood-2004-02-0521DOI Listing
February 2005