Publications by authors named "Tiago Antao"

30Publications

Detecting population declines via monitoring the effective number of breeders (N ).

Mol Ecol Resour 2020 Sep 2. Epub 2020 Sep 2.

Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, WA, 98112, USA.

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http://dx.doi.org/10.1111/1755-0998.13251DOI Listing
September 2020

Niche partitioning of microbial communities in riverine floodplains.

Sci Rep 2019 11 8;9(1):16384. Epub 2019 Nov 8.

Division of Biological Sciences, University of Montana, Missoula, MT, USA.

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http://dx.doi.org/10.1038/s41598-019-52865-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6841707PMC
November 2019

Genomic analyses inform on migration events during the peopling of Eurasia.

Authors:
Luca Pagani Daniel John Lawson Evelyn Jagoda Alexander Mörseburg Anders Eriksson Mario Mitt Florian Clemente Georgi Hudjashov Michael DeGiorgio Lauri Saag Jeffrey D Wall Alexia Cardona Reedik Mägi Melissa A Wilson Sayres Sarah Kaewert Charlotte Inchley Christiana L Scheib Mari Järve Monika Karmin Guy S Jacobs Tiago Antao Florin Mircea Iliescu Alena Kushniarevich Qasim Ayub Chris Tyler-Smith Yali Xue Bayazit Yunusbayev Kristiina Tambets Chandana Basu Mallick Lehti Saag Elvira Pocheshkhova George Andriadze Craig Muller Michael C Westaway David M Lambert Grigor Zoraqi Shahlo Turdikulova Dilbar Dalimova Zhaxylyk Sabitov Gazi Nurun Nahar Sultana Joseph Lachance Sarah Tishkoff Kuvat Momynaliev Jainagul Isakova Larisa D Damba Marina Gubina Pagbajabyn Nymadawa Irina Evseeva Lubov Atramentova Olga Utevska François-Xavier Ricaut Nicolas Brucato Herawati Sudoyo Thierry Letellier Murray P Cox Nikolay A Barashkov Vedrana Skaro Lejla Mulahasanovic Dragan Primorac Hovhannes Sahakyan Maru Mormina Christina A Eichstaedt Daria V Lichman Syafiq Abdullah Gyaneshwer Chaubey Joseph T S Wee Evelin Mihailov Alexandra Karunas Sergei Litvinov Rita Khusainova Natalya Ekomasova Vita Akhmetova Irina Khidiyatova Damir Marjanović Levon Yepiskoposyan Doron M Behar Elena Balanovska Andres Metspalu Miroslava Derenko Boris Malyarchuk Mikhail Voevoda Sardana A Fedorova Ludmila P Osipova Marta Mirazón Lahr Pascale Gerbault Matthew Leavesley Andrea Bamberg Migliano Michael Petraglia Oleg Balanovsky Elza K Khusnutdinova Ene Metspalu Mark G Thomas Andrea Manica Rasmus Nielsen Richard Villems Eske Willerslev Toomas Kivisild Mait Metspalu

Nature 2016 Oct 21;538(7624):238-242. Epub 2016 Sep 21.

Estonian Biocentre, Tartu, Estonia.

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http://dx.doi.org/10.1038/nature19792DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5164938PMC
October 2016

Positive selection of AS3MT to arsenic water in Andean populations.

Mutat Res 2015 Oct 29;780:97-102. Epub 2015 Jul 29.

Division of Biological Anthropology, University of Cambridge, Cambridge CB2 1QH, Cambridgeshire, UK; Faculty of Humanities and Social Sciences, University of Winchester, Winchester SO22 4NR, Hampshire, UK. Electronic address:

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http://dx.doi.org/10.1016/j.mrfmmm.2015.07.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4896383PMC
October 2015

Genetic and phenotypic differentiation of an Andean intermediate altitude population.

Physiol Rep 2015 May;3(5)

Division of Biological Anthropology, University of Cambridge, Cambridge, Cambridgeshire, UK Faculty of Humanities and Social Sciences, University of Winchester, Winchester, Hampshire, UK School of Chemistry, University of East Anglia, Norwich, Norfolk, UK.

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http://dx.doi.org/10.14814/phy2.12376DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4463816PMC
May 2015

Adaptive introgression between Anopheles sibling species eliminates a major genomic island but not reproductive isolation.

Nat Commun 2014 Jun 25;5:4248. Epub 2014 Jun 25.

1] Department of Vector Biology, Liverpool School of Tropical Medicine, Pembroke Place, Liverpool L3 5QA, UK [2] Malaria Programme, Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1RQ, UK.

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http://dx.doi.org/10.1038/ncomms5248DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4086683PMC
June 2014

Effects of overlapping generations on linkage disequilibrium estimates of effective population size.

Genetics 2014 Jun 8;197(2):769-80. Epub 2014 Apr 8.

Flathead Lake Biological Station, Fish and Wildlife Genomics Group, Division of Biological Sciences, University of Montana, Polson, Montana 59860.

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http://dx.doi.org/10.1534/genetics.114.164822DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4063931PMC
June 2014

The Andean adaptive toolkit to counteract high altitude maladaptation: genome-wide and phenotypic analysis of the Collas.

PLoS One 2014 31;9(3):e93314. Epub 2014 Mar 31.

Division of Biological Anthropology, University of Cambridge, Cambridge, Cambridgeshire, United Kingdom; School of Chemistry, University of East Anglia, Norwich, Norfolk, United Kingdom.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0093314PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3970967PMC
June 2015

Intermittent breeding and constraints on litter size: consequences for effective population size per generation (Ne ) and per reproductive cycle (Nb ).

Evolution 2014 Jun 28;68(6):1722-34. Epub 2014 Mar 28.

Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, Washington, 98112.

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http://dx.doi.org/10.1111/evo.12384DOI Listing
June 2014

Genome-wide evidence of Austronesian-Bantu admixture and cultural reversion in a hunter-gatherer group of Madagascar.

Proc Natl Acad Sci U S A 2014 Jan 6;111(3):936-41. Epub 2014 Jan 6.

Laboratoire d'Anthropologie Moléculaire et Imagerie de Synthèse, Unité Mixte de Recherche 5288, Centre National de la Recherche Scientifique, Université de Toulouse, 31073 Toulouse, France.

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http://dx.doi.org/10.1073/pnas.1321860111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3903192PMC
January 2014

A Large Plasmodium vivax Reservoir and Little Population Structure in the South Pacific.

PLoS One 2013 18;8(6):e66041. Epub 2013 Jun 18.

Swiss Tropical and Public Health Institute, Basel, Switzerland ; University of Basel, Basel, Switzerland ; Infection & Immunity Division, Walter & Eliza Hall Institute, Parkville, Victoria, Australia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0066041PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3688846PMC
October 2017

Policy options for deploying anti-malarial drugs in endemic countries: a population genetics approach.

Malar J 2012 Dec 17;11:422. Epub 2012 Dec 17.

Liverpool School of Tropical Medicine, Pembroke Place, Liverpool L3 5QA, UK.

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http://dx.doi.org/10.1186/1475-2875-11-422DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3546853PMC
December 2012

Mcheza: a workbench to detect selection using dominant markers.

Bioinformatics 2011 Jun 19;27(12):1717-8. Epub 2011 Apr 19.

Molecular and Biochemical Parasitology, Liverpool School of Tropical Medicine, Pembroke Place, Liverpool, UK.

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http://bioinformatics.oxfordjournals.org/content/early/2011/
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http://dx.doi.org/10.1093/bioinformatics/btr253DOI Listing
June 2011

Evolutionary parasitology applied to control and elimination policies.

Authors:
Tiago Antao

Trends Parasitol 2011 Jun 14;27(6):233-4. Epub 2011 Apr 14.

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http://dx.doi.org/10.1016/j.pt.2011.03.004DOI Listing
June 2011

ogaraK: a population genetics simulator for malaria.

Bioinformatics 2011 May 16;27(9):1335-6. Epub 2011 Mar 16.

Department of Molecular and Biochemical Parasitology, Liverpool School of Tropical Medicine, Pembroke Place, Liverpool, UK.

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http://dx.doi.org/10.1093/bioinformatics/btr139DOI Listing
May 2011

interPopula: a Python API to access the HapMap Project dataset.

Authors:
Tiago Antao

BMC Bioinformatics 2010 Dec 21;11 Suppl 12:S10. Epub 2010 Dec 21.

Liverpool School of Tropical Medicine, L3 5QA, Liverpool, UK.

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http://dx.doi.org/10.1186/1471-2105-11-S12-S10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3040524PMC
December 2010

Early detection of population declines: high power of genetic monitoring using effective population size estimators.

Evol Appl 2011 Jan 3;4(1):144-54. Epub 2010 Aug 3.

Flathead Lake Biological Station and Division of Biological Sciences, University of Montana Polson, MT, USA ; CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Campus Agrário de Vairão Vairão, Portugal.

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http://dx.doi.org/10.1111/j.1752-4571.2010.00150.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3352520PMC
January 2011

Environmental, pharmacological and genetic influences on the spread of drug-resistant malaria.

Proc Biol Sci 2011 Jun 17;278(1712):1705-12. Epub 2010 Nov 17.

Liverpool School of Tropical Medicine, Liverpool L3 5QA, UK.

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http://dx.doi.org/10.1098/rspb.2010.1907DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3081768PMC
June 2011

LOSITAN: a workbench to detect molecular adaptation based on a Fst-outlier method.

BMC Bioinformatics 2008 Jul 28;9:323. Epub 2008 Jul 28.

Liverpool School of Tropical Medicine, Pembroke Place, Liverpool L3 5QA, UK.

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http://dx.doi.org/10.1186/1471-2105-9-323DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2515854PMC
July 2008