Publications by authors named "Thomas Yu"

31Publications

Community Assessment of the Predictability of Cancer Protein and Phosphoprotein Levels from Genomics and Transcriptomics.

Cell Syst 2020 Aug 24;11(2):186-195.e9. Epub 2020 Jul 24.

Joint Research Centre for Computational Biomedicine (JRC-COMBINE), RWTH Aachen University, Faculty of Medicine, 52074 Aachen, Germany; European Molecular Biology Laboratory-The European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK; Institute for Computational Biomedicine, Heidelberg University Hospital and Heidelberg University, Faculty of Medicine, Bioquant Heidelberg, Hedelberg 69120, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.cels.2020.06.013DOI Listing
August 2020

Semantic workflows for benchmark challenges: Enhancing comparability, reusability and reproducibility.

Pac Symp Biocomput 2019 ;24:208-219

Computer Science and Engineering, The Ohio State University, 2015 Neil Ave Columbus, OH 43210, USA,

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6417805PMC
August 2019

A DREAM Challenge to Build Prediction Models for Short-Term Discontinuation of Docetaxel in Metastatic Castration-Resistant Prostate Cancer.

JCO Clin Cancer Inform 2017 11;1:1-15

Fatemeh Seyednasrollah and Laura L. Elo, Turku Centre for Biotechnology; University of Turku; Åbo Akademi University, Turku, Finland; Devin C. Koestler, University of Kansas Medical Center, Kansas City, KS; Tao Wang, University of Texas Southwestern Medical Center, Dallas, TX; Stephen R. Piccolo, Brigham Young University, Provo; University of Utah, Salt Lake City, Utah, UT; Roberto Vega, Russell Greiner, and Luke Kumar, University of Alberta; Alberta Innovates Centre for Machine Learning, Edmonton, Alberta, Canada; Christiane Fuchs, Helmholtz Zentrum München, Neuherberg; Technische Universität München, Garching, Germany; Eyal Gofer, The Hebrew University, Jerusalem, Israel; Russell D. Wolfinger, SAS Institute, Cary, NC; Kimberly Kanigel Winner and James C. Costello, University of Colorado, Anschutz Medical Campus, Aurora, CO; Chris Bare, Elias Chaibub Neto, Thomas Yu, Thea Norman, and Justin Guinney, Sage Bionetworks, Seattle, WA; Liji Shen and Fang Liz Zhou, Sanofi, Bridgewater, NJ; Kald Abdallah, AstraZeneca, Gaithersburg, MD; Gustavo Stolovitzky, IBM Research, Yorktown Heights; Howard I. Scher, Memorial Sloan Kettering Cancer Center and Weill Cornell Medical College, New York, NY; Howard R. Soule, Prostate Cancer Foundation, Santa Monica; Charles J. Ryan, University of California, San Francisco, CA; Christopher J. Sweeney, Dana-Farber Cancer Institute and Brigham and Women's Hospital, Harvard Medical School, Boston, MA; and Oliver Sartor, Tulane University, New Orleans, LA.

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http://dx.doi.org/10.1200/CCI.17.00018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6874023PMC
November 2017

Scattered manifold-valued data approximation.

Numer Math (Heidelb) 2017 8;135(4):987-1010. Epub 2016 Jul 8.

Department of Mathematics, Drexel University, 3141 Chestnut Street, Korman 269, Philadelphia, PA 19104 USA.

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http://dx.doi.org/10.1007/s00211-016-0823-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5445548PMC
July 2016

Unusual locations of primary subepithelial squamous cell carcinomas of the vulva.

J Low Genit Tract Dis 2013 Oct;17(4):e8-e11

1Hunter Area Pathology Service; 2School of Medicine and Public Health, University of Newcastle; and 3Hunter New England Centre for Gynaecologic Cancer Newcastle, New South Wales, Australia.

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http://dx.doi.org/10.1097/LGT.0b013e31827a8c95DOI Listing
October 2013

Hypertrophic scarring of the neck following ablative fractional carbon dioxide laser resurfacing.

Lasers Surg Med 2009 Mar;41(3):185-8

Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1002/lsm.20755DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2747732PMC
March 2009

Enhanced optical properties of chemical vapor deposited single crystal diamond by low-pressure/high-temperature annealing.

Proc Natl Acad Sci U S A 2008 Nov 12;105(46):17620-5. Epub 2008 Nov 12.

Geophysical Laboratory, Carnegie Institution of Washington, 5251 Broad Branch Road NW, Washington, DC 20015, USA.

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http://dx.doi.org/10.1073/pnas.0808230105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2584684PMC
November 2008

Using cellphones for teledermatology, a preliminary study.

Dermatol Online J 2007 Jul 13;13(3). Epub 2007 Jul 13.

St.Luke's-Roosevelt Hospital Center, NYC NY, USA.

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July 2007

Delays in diagnosis of head and neck cancers.

J Can Dent Assoc 2008 Feb;74(1):61

University of Toronto, Toronto, Ontario.

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February 2008

Bilateral hatchet flaps.

Dermatol Surg 2006 Oct;32(10):1279-82

Center for Laser and Dermatologic Surgery, Pomona, NY, USA.

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http://dx.doi.org/10.1111/j.1524-4725.2006.32291.xDOI Listing
October 2006

An improved vertex caching scheme for 3D mesh rendering.

IEEE Trans Vis Comput Graph 2006 Jul-Aug;12(4):640-8

Department of Electrical, Computer, and Systems Engineering, Rensselaer Polytechnic Institute, Troy, NY 12180-3590, USA.

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http://ieeexplore.ieee.org/document/1634327/
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http://dx.doi.org/10.1109/TVCG.2006.59DOI Listing
July 2006

The hedgehog pathway: revisited.

Dermatol Surg 2004 Apr;30(4 Pt 1):583-4

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http://dx.doi.org/10.1111/j.1524-4725.2004.30185.xDOI Listing
April 2004

Cutaneous oncologic and cosmetic surgery in geriatric patients.

Dermatol Clin 2004 Jan;22(1):97-113

Department of Dermatology, St. Luke's-Roosevelt Hospital Center, 1090 Amsterdam Avenue, Suite 11-D, New York, NY 10025, USA.

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http://dx.doi.org/10.1016/s0733-8635(03)00110-4DOI Listing
January 2004

Verrucous hyperplasia of the great toe: a case and a review of the literature.

Dermatol Surg 2004 Feb;30(2 Pt 1):215-7

Department of Dermatology, St. Luke's-Roosevelt Hospital Center, New York, New York 10025, USA.

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http://dx.doi.org/10.1111/j.1524-4725.2004.30070.xDOI Listing
February 2004

Actinic keratoses--surgical and physical therapeutic modalities.

Cutis 2003 May;71(5):381-4

Department of Dermatology, St. Luke's-Roosevelt Hospital Center, New York, New York 10025, USA.

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May 2003

Isolated lichen planus of the lower lip.

Cutis 2003 Mar;71(3):210-2

Department of Dermatology, St. Luke's-Roosevelt Hospital Center, New York, New York 10025, USA.

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March 2003

The new melanoma staging system.

Cutis 2002 May;69(5):332

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May 2002

Cyclopamine as a potential therapeutic agent for treatment of tumors related to hedgehog pathway mutations.

Dermatol Surg 2002 Feb;28(2):187

Johns Hopkins University, Baltimore, Maryland, USA.

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http://dx.doi.org/10.1046/j.1524-4725.2002.01179.xDOI Listing
February 2002