Publications by authors named "Thomas Stranzl"

17Publications

Reply to 'Defining distance restraints in HADDOCK'.

Nat Protoc 2018 07;13(7):1503-1505

Mass Spectrometry and Protein Chemistry, Research Institute of Molecular Pathology (IMP), Vienna Biocenter (VBC), Vienna, Austria.

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http://dx.doi.org/10.1038/s41596-018-0018-5DOI Listing
July 2018

Author Correction: Structural prediction of protein models using distance restraints derived from cross-linking mass spectrometry data.

Nat Protoc 2018 07;13(7):1724

Mass Spectrometry and Protein Chemistry, Research Institute of Molecular Pathology (IMP), Vienna Biocenter (VBC), Vienna, Austria.

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http://dx.doi.org/10.1038/s41596-018-0024-7DOI Listing
July 2018

Structural prediction of protein models using distance restraints derived from cross-linking mass spectrometry data.

Nat Protoc 2018 03 8;13(3):478-494. Epub 2018 Feb 8.

Mass Spectrometry and Protein Chemistry, Research Institute of Molecular Pathology (IMP), Vienna Biocenter (VBC),Vienna, Austria.

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http://dx.doi.org/10.1038/nprot.2017.146DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5999019PMC
March 2018

MS Amanda, a universal identification algorithm optimized for high accuracy tandem mass spectra.

J Proteome Res 2014 Aug 26;13(8):3679-84. Epub 2014 Jun 26.

Bioinformatics Research Group, University of Applied Sciences Upper Austria , Softwarepark 11, 4232 Hagenberg, Austria.

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http://dx.doi.org/10.1021/pr500202eDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4119474PMC
August 2014

Optimized nonlinear gradients for reversed-phase liquid chromatography in shotgun proteomics.

Anal Chem 2013 Aug 24;85(16):7777-85. Epub 2013 Jul 24.

Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, 17165 Solna, Sweden.

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http://dx.doi.org/10.1021/ac401145qDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3805310PMC
August 2013

The cancer exome generated by alternative mRNA splicing dilutes predicted HLA class I epitope density.

PLoS One 2012 25;7(9):e38670. Epub 2012 Sep 25.

Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0038670PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3458037PMC
April 2013

NetCTLpan: pan-specific MHC class I pathway epitope predictions.

Immunogenetics 2010 Jun 9;62(6):357-68. Epub 2010 Apr 9.

Department of Systems Biology DTU, Building 208, Center for Biological Sequence Analysis, Technical University of Denmark, Lyngby, 2800, Denmark.

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http://dx.doi.org/10.1007/s00251-010-0441-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2875469PMC
June 2010

Expression of MRP1, LRP and Pgp in breast carcinoma patients treated with preoperative chemotherapy.

Breast Cancer Res Treat 2003 Sep;81(2):149-57

Department of Pathology, University of Vienna, Vienna, Austria.

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http://dx.doi.org/10.1023/A:1025751631115DOI Listing
September 2003

Expression of cell cycle regulatory proteins in breast carcinomas before and after preoperative chemotherapy.

Breast Cancer Res Treat 2003 Mar;78(1):97-103

Department of Internal Medicine 1, Division of Oncology, University Hospital, Vienna, Austria.

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http://dx.doi.org/10.1023/a:1022165715043DOI Listing
March 2003

Low p27Kip1 expression is an independent adverse prognostic factor in patients with multiple myeloma.

Clin Cancer Res 2003 Feb;9(2):820-6

Department of Medicine I, Clinical Division of Oncology, University of Vienna, A-1090 Vienna, Austria.

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February 2003

Cyclin D3 is a predictive and prognostic factor in diffuse large B-cell lymphoma.

Clin Cancer Res 2002 Mar;8(3):729-33

Department of Internal Medicine I, Division of Oncology, University of Vienna, A-1090 Vienna, Austria.

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http://clincancerres.aacrjournals.org/content/8/3/729.full.p
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March 2002