Thomas S Rask

Thomas S Rask

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Thomas S Rask

Thomas S Rask

Publications by authors named "Thomas S Rask"

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Identifying functional groups among the diverse, recombining antigenic var genes of the malaria parasite Plasmodium falciparum from a local community in Ghana.

PLoS Comput Biol 2018 06 13;14(6):e1006174. Epub 2018 Jun 13.

Department of Ecology and Evolution, University of Chicago, Chicago, IL, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1006174DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6016947PMC
June 2018

A high parasite density environment induces transcriptional changes and cell death in Plasmodium falciparum blood stages.

FEBS J 2018 03 11;285(5):848-870. Epub 2018 Jan 11.

Bio21 Institute for Molecular Science and Biotechnology and School of BioSciences, University of Melbourne, Parkville, VIC., Australia.

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http://dx.doi.org/10.1111/febs.14370DOI Listing
March 2018

Using expected sequence features to improve basecalling accuracy of amplicon pyrosequencing data.

BMC Bioinformatics 2016 Apr 22;17:176. Epub 2016 Apr 22.

Department of Systems Biology, Center for Biological Sequence Analysis, Technical University of Denmark, Building 208, Kongens Lyngby, DK-2800, Denmark.

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http://dx.doi.org/10.1186/s12859-016-1032-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4841065PMC
April 2016

DNA secondary structures are associated with recombination in major Plasmodium falciparum variable surface antigen gene families.

Nucleic Acids Res 2014 Feb 18;42(4):2270-81. Epub 2013 Nov 18.

Centre for Medical Parasitology, Department of International Health, Immunology and Microbiology, Faculty of Health and Medical Sciences, University of Copenhagen, Øster Farimagsgade 5, Building 22 & 23, PO Box 2099, 1014 Copenhagen K, Denmark, Centre for Medical Parasitology, Department of Infectious Diseases, Copenhagen University Hospital (Rigshospitalet), Copenhagen K, Denmark, Department of Systems Biology, Center for Biological Sequence Analysis, Technical University of Denmark, 2800 Lyngby, Denmark, Department of Biology, University of Copenhagen, Ole Maaloees Vej 5, DK-2200 Copenhagen N, Denmark, Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350 Copenhagen, Denmark, Institute of Infection and Immunology Research, School of Biological Sciences, University of Edinburgh, West Mains Road, Edinburgh EH9 3JT, Scotland, UK and Department of Microbiology and Immunology, Weill Cornell Medical College, New York, NY 10065, USA.

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http://dx.doi.org/10.1093/nar/gkt1174DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3936766PMC
February 2014

Homology blocks of Plasmodium falciparum var genes and clinically distinct forms of severe malaria in a local population.

BMC Microbiol 2013 Nov 6;13:244. Epub 2013 Nov 6.

Department of Ecology and Evolutionary Biology, University of Michigan, 2019 Kraus Nat, Sci, Bldg,, 830 North University Ave, Ann Arbor 48109-1048, Michigan, USA.

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http://bmcmicrobiol.biomedcentral.com/articles/10.1186/1471-
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http://dx.doi.org/10.1186/1471-2180-13-244DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3827005PMC
November 2013

A novel domain cassette identifies Plasmodium falciparum PfEMP1 proteins binding ICAM-1 and is a target of cross-reactive, adhesion-inhibitory antibodies.

J Immunol 2013 Jan 3;190(1):240-9. Epub 2012 Dec 3.

Centre for Medical Parasitology, Department of International Health, Immunology and Microbiology, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen 1014, Denmark.

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http://dx.doi.org/10.4049/jimmunol.1202578DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3539686PMC
January 2013

Plasmodium falciparum erythrocyte membrane protein 1 domain cassettes 8 and 13 are associated with severe malaria in children.

Proc Natl Acad Sci U S A 2012 Jun 22;109(26):E1791-800. Epub 2012 May 22.

Centre for Medical Parasitology, Department of International Health, Immunology, and Microbiology, Faculty of Health Sciences, University of Copenhagen, Rigshospitalet, 1014 Copenhagen K, Denmark.

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http://dx.doi.org/10.1073/pnas.1120455109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3387094PMC
June 2012

Plasmodium falciparum erythrocyte membrane protein 1 diversity in seven genomes--divide and conquer.

PLoS Comput Biol 2010 Sep 16;6(9). Epub 2010 Sep 16.

Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark.

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http://dx.doi.org/10.1371/journal.pcbi.1000933DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2940729PMC
September 2010