Thomas R Clandinin

Thomas R Clandinin

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Thomas R Clandinin

Thomas R Clandinin

Publications by authors named "Thomas R Clandinin"

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70Publications

450Reads

Sequential Nonlinear Filtering of Local Motion Cues by Global Motion Circuits.

Neuron 2018 Oct 13;100(1):229-243.e3. Epub 2018 Sep 13.

Department of Neurobiology, Stanford University, Stanford, CA 94305, USA. Electronic address:

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October 2018

Elementary Motion Detection in Drosophila: Algorithms and Mechanisms.

Annu Rev Vis Sci 2018 Sep 27;4:143-163. Epub 2018 Jun 27.

Department of Neurobiology, Stanford University, Stanford, California 94305, USA; email:

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September 2018

Linear Summation Underlies Direction Selectivity in Drosophila.

Neuron 2018 Aug 26;99(4):680-688.e4. Epub 2018 Jul 26.

Department of Neurobiology, Stanford University, Stanford, CA 94305, USA. Electronic address:

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August 2018

Developmental Biology: Neurons That Divide Together Wire Together.

Curr Biol 2018 Jun;28(12):R715-R717

Department of Neurobiology, Stanford University, Stanford, CA 94305, USA. Electronic address:

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June 2018

Drosophila Connectomics: Mapping the Larval Eye's Mind.

Curr Biol 2017 Nov;27(21):R1161-R1163

Department of Neurobiology, Fairchild D200, 299 W. Campus Drive, Stanford University, Stanford, CA 94103, USA. Electronic address:

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November 2017

Glia put visual map in sync.

Science 2017 09;357(6354):867-868

Department of Neurobiology, Stanford University, Stanford, CA 94305, USA.

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September 2017

Whole-Brain Calcium Imaging Reveals an Intrinsic Functional Network in Drosophila.

Curr Biol 2017 Aug 27;27(15):2389-2396.e4. Epub 2017 Jul 27.

Department of Neurobiology, Stanford University, Stanford, CA 94103, USA. Electronic address:

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August 2017

Dynamic structure of locomotor behavior in walking fruit flies.

Elife 2017 07 25;6. Epub 2017 Jul 25.

Department of Neurobiology, Stanford University, Stanford, United States.

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July 2017

How Does Familiarity Breed Contempt?

Cell 2017 05;169(5):775-776

Department of Neurobiology, Stanford University, Stanford, CA 94305, USA. Electronic address:

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May 2017

FlpStop, a tool for conditional gene control in .

Elife 2017 02 17;6. Epub 2017 Feb 17.

Department of Neurobiology, Stanford University, Stanford, United States.

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February 2017

Editorial overview: Microcircuit evolution and computation 2016.

Curr Opin Neurobiol 2016 12 31;41:188-190. Epub 2016 Oct 31.

Brandeis University, Department of Biology, 415 South St, Waltham, MA, USA. Electronic address:

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December 2016

The Influence of Wiring Economy on Nervous System Evolution.

Curr Biol 2016 10;26(20):R1101-R1108

Department of Neurobiology, Stanford University, Stanford, CA 94305, USA. Electronic address:

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October 2016

Hedgehog signaling regulates gene expression in planarian glia.

Elife 2016 09 9;5. Epub 2016 Sep 9.

Department of Biology, Massachusetts Institute of Technology, Cambridge, United States.

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September 2016

Subcellular Imaging of Voltage and Calcium Signals Reveals Neural Processing In Vivo.

Cell 2016 Jun 2;166(1):245-57. Epub 2016 Jun 2.

Department of Neurobiology, Stanford University, Stanford, CA 94305, USA. Electronic address:

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June 2016

Grabbing brain activity on the go.

Proc Natl Acad Sci U S A 2016 Feb 3;113(8):1965-7. Epub 2016 Feb 3.

Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305

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February 2016

Can You Hear Me Now?

Neuron 2016 Feb;89(3):425-7

Department of Neurobiology, Stanford University, Stanford, CA 94305, USA. Electronic address:

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February 2016

A Drosophila toolkit for the visualization and quantification of viral replication launched from transgenic genomes.

PLoS One 2014 11;9(11):e112092. Epub 2014 Nov 11.

Department of Neurobiology, Stanford University School of Medicine, Stanford, California, United States of America.

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December 2015

A Class of Visual Neurons with Wide-Field Properties Is Required for Local Motion Detection.

Curr Biol 2015 Dec 5;25(24):3178-89. Epub 2015 Dec 5.

European Neuroscience Institute, Grisebachstrasse 5, 37077 Göttingen, Germany. Electronic address:

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December 2015

Extremely sparse olfactory inputs are sufficient to mediate innate aversion in Drosophila.

PLoS One 2015 30;10(4):e0125986. Epub 2015 Apr 30.

Howard Hughes Medical Institute and Department of Biology, Stanford University, Stanford, California, United States of America; Department of Neurobiology, Stanford University, Stanford, California, United States of America.

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October 2015

Orientation Selectivity Sharpens Motion Detection in Drosophila.

Neuron 2015 Oct 8;88(2):390-402. Epub 2015 Oct 8.

Department of Neurobiology, Stanford University, Stanford, CA 94305, USA. Electronic address:

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October 2015

Neurons Rho to Get in Shape for the Day.

Cell 2015 Aug;162(4):699-700

Department of Neurobiology, Stanford University, Stanford, CA 94305, USA. Electronic address:

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August 2015

Differences in neural circuitry guiding behavioral responses to polarized light presented to either the dorsal or ventral retina in Drosophila.

J Neurogenet 2014 Sep-Dec;28(3-4):348-60. Epub 2014 Jul 8.

Department of Neurobiology, Stanford University School of Medicine , Stanford, CA , USA.

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June 2015

A transcriptional reporter of intracellular Ca(2+) in Drosophila.

Nat Neurosci 2015 Jun 11;18(6):917-25. Epub 2015 May 11.

1] Howard Hughes Medical Institute and Department of Biology, Stanford University, Stanford, California, USA. [2] Department of Neurobiology, Stanford University, Stanford, California, USA.

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June 2015

Neuroscience: Internal compass puts flies in their place.

Nature 2015 May;521(7551):165-6

Department of Neurobiology, Stanford University, Stanford, California 94305, USA.

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May 2015

Motion-detecting circuits in flies: coming into view.

Annu Rev Neurosci 2014 ;37:307-27

Department of Neurobiology, Stanford University, Stanford, California 94305; email: , ,

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March 2015

Processing properties of ON and OFF pathways for Drosophila motion detection.

Nature 2014 Aug 6;512(7515):427-30. Epub 2014 Jul 6.

1] Center for Developmental Genetics, Department of Biology, New York University, New York, New York 10003-6688, USA [2] Center for Genomics &Systems Biology, New York University Abu Dhabi Institute, Abu Dhabi, United Arab Emirates.

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August 2014

Identifying functional connections of the inner photoreceptors in Drosophila using Tango-Trace.

Neuron 2014 Aug 18;83(3):630-44. Epub 2014 Jul 18.

Department of Neuroscience and the Howard Hughes Medical Institute, College of Physicians and Surgeons, Columbia University, New York, NY 10032, USA. Electronic address:

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August 2014

What can fruit flies teach us about karate?

Elife 2014 Aug 19;3:e04040. Epub 2014 Aug 19.

Thomas R Clandinin is in the Department of Neurobiology, Stanford University, Stanford, United States

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August 2014

Walking Drosophila align with the e-vector of linearly polarized light through directed modulation of angular acceleration.

J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2014 Jun 10;200(6):603-14. Epub 2014 May 10.

Department of Neurobiology, Stanford University, Stanford, CA, 94305, USA.

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June 2014

Differential adhesion determines the organization of synaptic fascicles in the Drosophila visual system.

Curr Biol 2014 Jun 29;24(12):1304-1313. Epub 2014 May 29.

Department of Neurobiology, Stanford University, Stanford, CA 94305, USA. Electronic address:

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June 2014

Vision: EM-erging motion-detecting circuits.

Curr Biol 2014 May;24(10):R390-2

Department of Neurobiology, Stanford University, Stanford, CA 94305, USA. Electronic address:

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May 2014

Large-scale mapping of transposable element insertion sites using digital encoding of sample identity.

Genetics 2014 Mar 27;196(3):615-23. Epub 2013 Dec 27.

Department of Neurobiology, Stanford University, Stanford, California 94305.

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March 2014

Flies and humans share a motion estimation strategy that exploits natural scene statistics.

Nat Neurosci 2014 Feb 5;17(2):296-303. Epub 2014 Jan 5.

Department of Neurobiology, Stanford University, Stanford, California, USA.

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February 2014

Generation of infectious virus particles from inducible transgenic genomes.

Curr Biol 2014 Feb;24(3):R107-8

Department of Neurobiology, Stanford University School of Medicine, Stanford, CA 94305, USA. Electronic address:

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February 2014

Specific kinematics and motor-related neurons for aversive chemotaxis in Drosophila.

Curr Biol 2013 Jul 13;23(13):1163-72. Epub 2013 Jun 13.

Howard Hughes Medical Institute and Department of Biology, Stanford University, Stanford, CA 94305, USA.

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July 2013

Modular use of peripheral input channels tunes motion-detecting circuitry.

Neuron 2013 Jul;79(1):111-27

Department of Neurobiology, Stanford University, Stanford, CA 94305, USA.

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July 2013

A network of cadherin-mediated interactions polarizes growth cones to determine targeting specificity.

Cell 2013 Jul;154(2):351-64

Department of Neurobiology, Stanford University, Stanford, CA 94305, USA.

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July 2013

GABAergic lateral interactions tune the early stages of visual processing in Drosophila.

Neuron 2013 Jun;78(6):1075-89

Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA.

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June 2013

Mapping and cracking sensorimotor circuits in genetic model organisms.

Neuron 2013 May;78(4):583-95

Department of Neurobiology, 299 W. Campus Drive, Stanford University, Stanford, CA 94305, USA.

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May 2013

Apical-basal polarity proteins are required cell-type specifically to direct photoreceptor morphogenesis.

Curr Biol 2012 Dec 15;22(24):2319-24. Epub 2012 Nov 15.

Department of Neurobiology, Stanford University, Stanford, CA 94305, USA.

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December 2012

Visual transduction: microvilli orchestrate photoreceptor responses to light.

Curr Biol 2012 Aug;22(15):R595-7

Department of Electrical Engineering, David Packard Building, 350 Serra Mall, Stanford University, Stanford, CA 94305, USA.

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August 2012

Axon trapping: constructing the visual system one layer at a time.

Neuron 2012 Jul;75(1):6-8

Department of Neurobiology, Stanford University, Stanford, CA 94305, USA.

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July 2012

Cell biology. Vitamin K2 takes charge.

Science 2012 Jun;336(6086):1241-2

Department of Neurobiology, Stanford University, Stanford, CA 94305, USA.

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June 2012

Loom-sensitive neurons link computation to action in the Drosophila visual system.

Curr Biol 2012 Mar 2;22(5):353-62. Epub 2012 Feb 2.

Department of Neurobiology, Stanford University, Stanford, CA 94305, USA.

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March 2012

The cytoskeletal regulator Genghis khan is required for columnar target specificity in the Drosophila visual system.

Development 2011 Nov 17;138(22):4899-909. Epub 2011 Oct 17.

Department of Neurobiology, 299 W. Campus Drive, Stanford University, Stanford, CA 94305, USA.

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November 2011

Symmetries in stimulus statistics shape the form of visual motion estimators.

Proc Natl Acad Sci U S A 2011 Aug 18;108(31):12909-14. Epub 2011 Jul 18.

Bio-X, James H. Clark Center, Department of Physics, Stanford University, Stanford, CA 94305, USA.

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August 2011

Defining the computational structure of the motion detector in Drosophila.

Neuron 2011 Jun;70(6):1165-77

Department of Neurobiology, Stanford University, Stanford, CA 94305, USA.

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June 2011

More than just glue: the diverse roles of cell adhesion molecules in the Drosophila nervous system.

Cell Adh Migr 2009 Jan-Mar;3(1):36-42. Epub 2009 Jan 5.

Department of Neurobiology, Stanford University, Stanford, CA 94305, USA.

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September 2010

Molecular and cellular mechanisms of lamina-specific axon targeting.

Cold Spring Harb Perspect Biol 2010 Mar;2(3):a001743

Department of Neurobiology, Stanford University School of Medicine, Palo Alto, California 94305, USA.

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March 2010

Thinking about visual behavior; learning about photoreceptor function.

Curr Top Dev Biol 2005 ;69:187-213

Department of Neurobiology, Stanford University, Stanford, California 94305, USA.

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September 2009

Making a visual map: mechanisms and molecules.

Curr Opin Neurobiol 2009 Apr 27;19(2):174-80. Epub 2009 May 27.

Department of Neurobiology, Fairchild D200, 299W. Campus Drive, Stanford University, Stanford, CA 94305, United States.

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April 2009

Reactive oxygen species act remotely to cause synapse loss in a Drosophila model of developmental mitochondrial encephalopathy.

Development 2008 Aug 3;135(15):2669-79. Epub 2008 Jul 3.

Department of Neurobiology, 299 W. Campus Drive, Stanford University, Stanford, CA 94305, USA.

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August 2008

Motion processing streams in Drosophila are behaviorally specialized.

Neuron 2008 Jul;59(2):322-35

Department of Neurobiology, Stanford University, Stanford, CA 94305, USA.

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July 2008

Neural circuitry: seeing the parts that make the picture.

Curr Biol 2008 May;18(9):R378-80

Department of Neurobiology, Stanford University, Stanford, CA 94305, USA.

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May 2008

The cadherin Flamingo mediates level-dependent interactions that guide photoreceptor target choice in Drosophila.

Neuron 2008 Apr;58(1):26-33

Department of Neurobiology, Stanford University, Stanford, CA 94305, USA.

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April 2008

The agrin/perlecan-related protein eyes shut is essential for epithelial lumen formation in the Drosophila retina.

Dev Cell 2006 Oct;11(4):483-93

Department of Cell and Systems Biology, University of Toronto, Toronto, Ontario M5S 3G5, Canada.

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October 2006

Liprin-alpha is required for photoreceptor target selection in Drosophila.

Proc Natl Acad Sci U S A 2006 Aug 24;103(31):11601-6. Epub 2006 Jul 24.

Department of Neurobiology, Stanford University, Stanford, CA 94305, USA.

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August 2006

Insect vision: remembering the shape of things.

Curr Biol 2006 May;16(10):R369-71

Department of Neurobiology, 299 W. Campus Drive, Stanford University, Stanford, California 94305, USA.

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May 2006

The mechanisms and molecules that connect photoreceptor axons to their targets in Drosophila.

Semin Cell Dev Biol 2006 Feb 6;17(1):42-9. Epub 2005 Dec 6.

Department of Neurobiology, Fairchild D200, 299 W. Campus Drive, Stanford University, Stanford, CA 94305, USA.

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February 2006

An isoform-specific allele of Drosophila N-cadherin disrupts a late step of R7 targeting.

Proc Natl Acad Sci U S A 2005 Sep 25;102(36):12944-9. Epub 2005 Aug 25.

Department of Biological Chemistry, David Geffen School of Medicine, University of California and Howard Hughes Medical Institute, Los Angeles, CA 90095, USA.

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September 2005

Drosophila N-cadherin mediates an attractive interaction between photoreceptor axons and their targets.

Nat Neurosci 2005 Apr 27;8(4):443-50. Epub 2005 Feb 27.

Department of Neurobiology, 299 W. Campus Drive, Stanford University, Stanford, California 94305, USA.

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April 2005

Surprising twists to exocyst function.

Neuron 2005 Apr;46(2):164-6

Department of Neurobiology, Stanford University, Stanford, CA 94305, USA.

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April 2005

The protocadherin Flamingo is required for axon target selection in the Drosophila visual system.

Nat Neurosci 2003 Jun;6(6):557-63

Department of Biological Chemistry, David Geffen School of Medicine at UCLA, Howard Hughes Medical Institute, Box 951662, Los Angeles, California 90095-1662, USA.

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June 2003

Making connections in the fly visual system.

Neuron 2002 Aug;35(5):827-41

Department of Biological Chemistry, Howard Hughes Medical Institute, University of California, School of Medicine, Los Angeles, CA 90095, USA.

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August 2002