Thomas Derrien

Thomas Derrien

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Thomas Derrien

Thomas Derrien

Publications by authors named "Thomas Derrien"

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Transcriptome profiling of mouse samples using nanopore sequencing of cDNA and RNA molecules.

Sci Rep 2019 Oct 17;9(1):14908. Epub 2019 Oct 17.

Genoscope, Institut de biologie François-Jacob, Commissariat a l'Energie Atomique (CEA), Université Paris-Saclay, F-91057, Evry, France.

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http://dx.doi.org/10.1038/s41598-019-51470-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6797730PMC
October 2019

Structure and stimuli-responsiveness of all-DNA dendrimers: theory and experiment.

Nanoscale 2019 Jan;11(4):1604-1617

Institute for Theoretical Physics, TU Wien, Wiedner Hauptstraße 8-10, A-1040 Vienna, Austria.

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http://xlink.rsc.org/?DOI=C8NR05814H
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http://dx.doi.org/10.1039/c8nr05814hDOI Listing
January 2019

Characterisation and functional predictions of canine long non-coding RNAs.

Sci Rep 2018 09 7;8(1):13444. Epub 2018 Sep 7.

Univ Rennes, CNRS, IGDR (Institut de génétique et développement de Rennes) - UMR 6290, F-35000, Rennes, France.

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http://dx.doi.org/10.1038/s41598-018-31770-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6128939PMC
September 2018

Bioinformatics Pipeline for Transcriptome Sequencing Analysis.

Methods Mol Biol 2017 ;1468:201-19

CNRS UMR6290 Dog Genetic Team, 2 av du Pr. Léon Bernard, Rennes, 35043, France.

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http://dx.doi.org/10.1007/978-1-4939-4035-6_14DOI Listing
January 2018

Re-annotation, improved large-scale assembly and establishment of a catalogue of noncoding loci for the genome of the model brown alga Ectocarpus.

New Phytol 2017 Apr 21;214(1):219-232. Epub 2016 Nov 21.

Algal Genetics Group, CNRS, UMR 8227, Integrative Biology of Marine Models, Sorbonne Université, UPMC Univ Paris 06, Station Biologique de Roscoff, CS 90074, F-29688, Roscoff, France.

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http://dx.doi.org/10.1111/nph.14321DOI Listing
April 2017

Erratum to: Bioinformatics Pipeline for Transcriptome Sequencing Analysis.

Methods Mol Biol 2017 ;1468:E1

CNRS UMR6290 Dog Genetic Team, 2 av du Pr. Léon Bernard, Rennes, 35043, France.

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http://dx.doi.org/10.1007/978-1-4939-4035-6_17DOI Listing
January 2017

DNA Microgels as a Platform for Cell-Free Protein Expression and Display.

Biomacromolecules 2016 06 17;17(6):2019-26. Epub 2016 May 17.

Department of Biological and Environmental Engineering, Cornell University , Ithaca, New York 14853, United States.

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http://dx.doi.org/10.1021/acs.biomac.6b00183DOI Listing
June 2016

Third Report on Chicken Genes and Chromosomes 2015.

Authors:
Michael Schmid Jacqueline Smith David W Burt Bronwen L Aken Parker B Antin Alan L Archibald Chris Ashwell Perry J Blackshear Clarissa Boschiero C Titus Brown Shane C Burgess Hans H Cheng William Chow Derrick J Coble Amanda Cooksey Richard P M A Crooijmans Joana Damas Richard V N Davis Dirk-Jan de Koning Mary E Delany Thomas Derrien Takele T Desta Ian C Dunn Matthew Dunn Hans Ellegren Lél Eöry Ionas Erb Marta Farré Mario Fasold Damarius Fleming Paul Flicek Katie E Fowler Laure Frésard David P Froman Valerie Garceau Paul P Gardner Almas A Gheyas Darren K Griffin Martien A M Groenen Thomas Haaf Olivier Hanotte Alan Hart Julien Häsler S Blair Hedges Jana Hertel Kerstin Howe Allen Hubbard David A Hume Pete Kaiser Darek Kedra Stephen J Kemp Christophe Klopp Kalmia E Kniel Richard Kuo Sandrine Lagarrigue Susan J Lamont Denis M Larkin Raman A Lawal Sarah M Markland Fiona McCarthy Heather A McCormack Marla C McPherson Akira Motegi Stefan A Muljo Andrea Münsterberg Rishi Nag Indrajit Nanda Michael Neuberger Anne Nitsche Cedric Notredame Harry Noyes Rebecca O'Connor Elizabeth A O'Hare Andrew J Oler Sheila C Ommeh Helio Pais Michael Persia Frédérique Pitel Likit Preeyanon Pablo Prieto Barja Elizabeth M Pritchett Douglas D Rhoads Charmaine M Robinson Michael N Romanov Max Rothschild Pierre-François Roux Carl J Schmidt Alisa-Sophia Schneider Matthew G Schwartz Steve M Searle Michael A Skinner Craig A Smith Peter F Stadler Tammy E Steeves Claus Steinlein Liang Sun Minoru Takata Igor Ulitsky Qing Wang Ying Wang Wesley C Warren Jonathan M D Wood David Wragg Huaijun Zhou

Cytogenet Genome Res 2015 14;145(2):78-179. Epub 2015 Jul 14.

Department of Human Genetics, University of Würzburg, Würzburg, Germany.

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http://dx.doi.org/10.1159/000430927DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5120589PMC
October 2015

DNA materials: bridging nanotechnology and biotechnology.

Acc Chem Res 2014 Jun 2;47(6):1902-11. Epub 2014 Jun 2.

Department of Biological & Environmental Engineering, Cornell University , Ithaca, New York 14853, United States.

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http://dx.doi.org/10.1021/ar5001082DOI Listing
June 2014

Crystallization of DNA-capped gold nanoparticles in high-concentration, divalent salt environments.

Angew Chem Int Ed Engl 2014 Jan 20;53(5):1316-9. Epub 2013 Dec 20.

Department of Biomedical Engineering, Cornell University, Ithaca, NY 14853 (USA); Current Address: Institute of Materials Research and Engineering, 3 Research Link, Singapore 117602 (Singapore).

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http://dx.doi.org/10.1002/anie.201307113DOI Listing
January 2014

The Long Non-Coding RNAs: A New (P)layer in the "Dark Matter".

Front Genet 2011 9;2:107. Epub 2012 Jan 9.

Bioinformatics and Genomics, Centre for Genomic Regulation, Universitat Pompeu Fabra Barcelona, Spain.

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http://dx.doi.org/10.3389/fgene.2011.00107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3266617PMC
October 2012

Landscape of transcription in human cells.

Nature 2012 Sep;489(7414):101-8

Centre for Genomic Regulation and UPF, Doctor Aiguader 88, Barcelona 08003, Catalonia, Spain.

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http://dx.doi.org/10.1038/nature11233DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3684276PMC
September 2012

Fast computation and applications of genome mappability.

PLoS One 2012 19;7(1):e30377. Epub 2012 Jan 19.

Institut de Génétique et Développement (IGDR), Université Rennes 1, Rennes, France.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0030377PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3261895PMC
June 2012

Annotation of the domestic dog genome sequence: finding the missing genes.

Mamm Genome 2012 Feb 11;23(1-2):124-31. Epub 2011 Nov 11.

Institut de Génétique et Développement de Rennes, CNRS-UMR6061, Université de Rennes 1, 2 av Pr. Léon Bernard, 35043 Rennes, France.

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http://link.springer.com/10.1007/s00335-011-9372-0
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http://dx.doi.org/10.1007/s00335-011-9372-0DOI Listing
February 2012

[Long non-coding RNAs with enhancer-like function in human cells].

Med Sci (Paris) 2011 Apr 28;27(4):359-61. Epub 2011 Apr 28.

Institut de génétique et développement de Rennes 1, CNRS UMR6061, 2, avenue du Pr Léon Bernard, Faculté de Médecine, Université de Rennes1, Rennes, France.

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http://dx.doi.org/10.1051/medsci/2011274009DOI Listing
April 2011

Revisiting the missing protein-coding gene catalog of the domestic dog.

BMC Genomics 2009 Feb 4;10:62. Epub 2009 Feb 4.

Institut de Génétique et Développement, CNRS UMR6061, Université de Rennes 1, Léon Bernard, Rennes, France.

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http://dx.doi.org/10.1186/1471-2164-10-62DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2644713PMC
February 2009

Analysis of the unassembled part of the dog genome sequence: chromosomal localization of 115 genes inferred from multispecies comparative genomics.

J Hered 2007 15;98(5):461-7. Epub 2007 Jun 15.

CNRS UMR6061 Génétique et Développement, Université de Rennes 1, IFR140, 2 Av du Pr Léon Bernard, CS 34317, 35043, Rennes, France.

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http://dx.doi.org/10.1093/jhered/esm027DOI Listing
December 2007

AutoGRAPH: an interactive web server for automating and visualizing comparative genome maps.

Bioinformatics 2007 Feb 4;23(4):498-9. Epub 2006 Dec 4.

CNRS UMR6061 Génétique et Développement, Université de Rennes1, IFR140, 2 Av du Pr. Léon Bernard, CS 34317, 35043, France.

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http://dx.doi.org/10.1093/bioinformatics/btl618DOI Listing
February 2007

Coat colour in dogs: identification of the merle locus in the Australian shepherd breed.

BMC Vet Res 2006 Feb 27;2. Epub 2006 Feb 27.

UMR 6061 CNRS, Génétique et Développement, Faculté de Médecine, Université de Rennes1, 35043 RENNES Cédex, France.

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http://dx.doi.org/10.1186/1746-6148-2-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1431520PMC
February 2006

CRH_Server: an online comparative and radiation hybrid mapping server for the canine genome.

Bioinformatics 2004 Dec 15;20(18):3665-7. Epub 2004 Jul 15.

UMR 6061 CNRS, Génétique et Développement, faculté de Médecine, Université de Rennes1, 2 avenue Pr. Léon Bernard, 35043 Rennes Cédex, France.

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http://bioinformatics.oxfordjournals.org/content/20/18/3665.
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http://bioinformatics.oxfordjournals.org/cgi/doi/10.1093/bio
Publisher Site
http://dx.doi.org/10.1093/bioinformatics/bth411DOI Listing
December 2004