Publications by authors named "Thomas Barry"

44Publications

Arborescent lycophyte growth in the late Carboniferous coal swamps.

New Phytol 2018 05 28;218(3):885-890. Epub 2017 Dec 28.

Department of Natural Sciences, National Museum Wales, Cathays Park, Cardiff, CF10 3NP, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/nph.14903DOI Listing
May 2018

Amplification-free detection of microRNAs via a rapid microarray-based sandwich assay.

Anal Bioanal Chem 2017 May 27;409(14):3497-3505. Epub 2017 Mar 27.

Molecular Diagnostics Research Group, School of Natural Sciences and National Centre for Biomedical Engineering Science, NUI Galway, Galway, H91 CF50, Ireland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00216-017-0298-6DOI Listing
May 2017

Development of internally controlled duplex real-time NASBA diagnostics assays for the detection of microorganisms associated with bacterial meningitis.

J Microbiol Methods 2016 08 16;127:197-202. Epub 2016 Jun 16.

Nucleic Acid Diagnostics Research Laboratory (NADRL), Microbiology, School of Natural Sciences, National University of Ireland, Galway, Ireland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.mimet.2016.06.017DOI Listing
August 2016

Cross Platform Standardisation of an Experimental Pipeline for Use in the Identification of Dysregulated Human Circulating MiRNAs.

PLoS One 2015 10;10(9):e0137389. Epub 2015 Sep 10.

Nucleic Acid Diagnostics Research Laboratory (NADRL), Microbiology, School of Natural Sciences, National University of Ireland, Galway, Ireland.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0137389PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4565682PMC
May 2016

Comparative genome analysis identifies novel nucleic acid diagnostic targets for use in the specific detection of Haemophilus influenzae.

Diagn Microbiol Infect Dis 2015 Oct 23;83(2):112-6. Epub 2015 Jun 23.

Nucleic Acid Diagnostics Research Laboratory (NADRL), Microbiology, School of Natural Sciences, National University of Ireland, Galway, Ireland.

View Article

Download full-text PDF

Source
https://linkinghub.elsevier.com/retrieve/pii/S07328893150021
Publisher Site
http://dx.doi.org/10.1016/j.diagmicrobio.2015.06.013DOI Listing
October 2015

A rapid culture independent methodology to quantitatively detect and identify common human bacterial pathogens associated with contaminated high purity water.

BMC Biotechnol 2015 Feb 18;15. Epub 2015 Feb 18.

Nucleic Acid Diagnostics Research Laboratory (NADRL), Microbiology, School of Natural Sciences, National University of Ireland Galway, Galway, Ireland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12896-015-0124-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4342816PMC
February 2015

A current overview of commercially available nucleic acid diagnostics approaches to detect and identify human gastroenteritis pathogens.

Biomol Detect Quantif 2014 Sep 14;1(1):3-7. Epub 2014 Aug 14.

Nucleic Acid Diagnostics Research Laboratory (NADRL), Microbiology, School of Natural Sciences, National University of Ireland, Galway, Ireland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.bdq.2014.07.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5129431PMC
September 2014

Rapid nucleic acid diagnostics for the detection of antimicrobial resistance in Gram-negative bacteria: is it time for a paradigm shift?

J Antimicrob Chemother 2014 Jul 27;69(7):1729-33. Epub 2014 Mar 27.

Department for Clinical Microbiology, 2nd Floor Royal Free Hospital, University College London, Rowland Hill St., London NW3 2PF, UK

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/jac/dku083DOI Listing
July 2014

Diagnostics method for the rapid quantitative detection and identification of low-level contamination of high-purity water with pathogenic bacteria.

J Ind Microbiol Biotechnol 2013 Sep 20;40(9):1005-13. Epub 2013 Jun 20.

Microbiology, School of Natural Sciences, National University of Ireland, Galway, Ireland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s10295-013-1295-1DOI Listing
September 2013

Advances in multiparametric molecular diagnostics technologies for respiratory tract infections.

Curr Opin Pulm Med 2013 May;19(3):298-304

Microbiology, School of Natural Sciences, National University of Ireland, Galway, Ireland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1097/MCP.0b013e32835f1b32DOI Listing
May 2013

Ultrathin and smooth poly(methyl methacrylate) (PMMA) films for label-free biomolecule detection with total internal reflection ellipsometry (TIRE).

Biosens Bioelectron 2012 Jun-Jul;36(1):250-6. Epub 2012 Apr 25.

Biomedical Diagnostics Institute (BDI), Dublin City University, Dublin 9, Republic of Ireland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.bios.2012.04.032DOI Listing
October 2012

SeekTB, a two-stage multiplex real-time-PCR-based method for differentiation of the Mycobacterium tuberculosis complex.

J Clin Microbiol 2012 Jul 2;50(7):2203-6. Epub 2012 May 2.

Microbiology, School of Natural Sciences, National University of Ireland, Galway, Ireland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/JCM.00718-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3405619PMC
July 2012

Label-free, multiplexed detection of bacterial tmRNA using silicon photonic microring resonators.

Biosens Bioelectron 2012 Jun-Jul;36(1):56-61. Epub 2012 Apr 6.

Department of Biotechnology, Institute of Molecular and Cellular Biology, University of Tartu, Tartu, Estonia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.bios.2012.03.037DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3367093PMC
October 2012

Culture confirmation of Listeria monocytogenes using tmRNA as a diagnostics target.

J Microbiol Methods 2012 Mar 10;88(3):427-9. Epub 2012 Jan 10.

Microbiology, School of Natural Sciences, National University of Ireland, Galway, Ireland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.mimet.2011.12.014DOI Listing
March 2012

Sea urchin tube feet are photosensory organs that express a rhabdomeric-like opsin and PAX6.

Proc Biol Sci 2011 Nov 30;278(1723):3371-9. Epub 2011 Mar 30.

Department of Molecular, Cellular and Biomedical Sciences, University of New Hampshire, Durham, NH 03824, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1098/rspb.2011.0336DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3177635PMC
November 2011

Development and evaluation of DNA and RNA real-time assays for food analysis using the hilA gene of Salmonella enterica subspecies enterica.

Food Microbiol 2011 May 27;28(3):447-56. Epub 2010 Oct 27.

Food Safety Department, Ashtown Food Research Centre, Teagasc, Ashtown, Dublin 15, Ireland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.fm.2010.10.012DOI Listing
May 2011

Detection of NASBA amplified bacterial tmRNA molecules on SLICSel designed microarray probes.

BMC Biotechnol 2011 Feb 28;11:17. Epub 2011 Feb 28.

Dept, of Biotechnology, Institute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1472-6750-11-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3051898PMC
February 2011

High sensitivity DNA detection using gold nanoparticle functionalised polyaniline nanofibres.

Biosens Bioelectron 2011 Jan 19;26(5):2613-8. Epub 2010 Nov 19.

Biomedical Diagnostics Institute, School of Chemical Sciences, Dublin City University, Dublin 9, Ireland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.bios.2010.11.017DOI Listing
January 2011

Novel multiplex real-time PCR diagnostic assay for identification and differentiation of Mycobacterium tuberculosis, Mycobacterium canettii, and Mycobacterium tuberculosis complex strains.

J Clin Microbiol 2011 Feb 1;49(2):651-7. Epub 2010 Dec 1.

Microbiology, School of Natural Sciences, National University of Ireland, Galway, University Road, Co. Galway, Ireland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/JCM.01426-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3043491PMC
February 2011

Validation of DNA and RNA real-time assays for food analysis using the hilA gene of Salmonella enterica serovars.

J Microbiol Methods 2011 Jan 14;84(1):19-26. Epub 2010 Oct 14.

Food Safety Department, Ashtown Food Research Centre, Teagasc, Ashtown, Dublin 15, Ireland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.mimet.2010.10.004DOI Listing
January 2011

Development and validation of a rapid real-time PCR based method for the specific detection of Salmonella on fresh meat.

Meat Sci 2009 Nov 14;83(3):555-62. Epub 2009 Jul 14.

Molecular Diagnostics Research Group, National Centre for Biomedical Engineering Science, National University of Ireland Galway, Galway, Ireland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.meatsci.2009.07.004DOI Listing
November 2009

tmRNA--a novel high-copy-number RNA diagnostic target--its application for Staphylococcus aureus detection using real-time NASBA.

FEMS Microbiol Lett 2009 Dec 20;301(2):218-23. Epub 2009 Oct 20.

The Biomedical Diagnostics Institute Program, National University of Ireland Galway, Galway, Ireland.

View Article

Download full-text PDF

Source
https://academic.oup.com/femsle/article-lookup/doi/10.1111/j
Publisher Site
http://dx.doi.org/10.1111/j.1574-6968.2009.01822.xDOI Listing
December 2009

Evaluation of a novel real-time PCR test based on the ssrA gene for the identification of group B streptococci in vaginal swabs.

BMC Infect Dis 2009 Sep 4;9:148. Epub 2009 Sep 4.

Molecular Diagnostics Research Group, National Centre for Biomedical Engineering Science, Galway, Ireland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2334-9-148DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2755475PMC
September 2009

Rapid detection of Listeria monocytogenes in food using culture enrichment combined with real-time PCR.

Food Microbiol 2009 Feb 13;26(1):4-7. Epub 2008 Sep 13.

Molecular Diagnostics Laboratory, Department of Microbiology, National University of Ireland Galway, University Road, Galway, Ireland.

View Article

Download full-text PDF

Source
http://linkinghub.elsevier.com/retrieve/pii/S074000200800174
Publisher Site
http://dx.doi.org/10.1016/j.fm.2008.08.009DOI Listing
February 2009

A novel quantitative reverse-transcription PCR (qRT-PCR) for the enumeration of total bacteria, using meat micro-flora as a model.

J Microbiol Methods 2009 Apr 5;77(1):1-7. Epub 2008 Nov 5.

Food Safety Department, Ashtown Food Research Centre, Teagasc, Dublin 15, Ireland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.mimet.2008.10.013DOI Listing
April 2009

Development of a real-time multiplex PCR assay for the detection of multiple Salmonella serotypes in chicken samples.

BMC Microbiol 2008 Sep 21;8:156. Epub 2008 Sep 21.

Centres for Food Safety and Food-borne Zoonomics, UCD Veterinary Sciences Centre, University College Dublin, Belfield, Dublin 4, Ireland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2180-8-156DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2564954PMC
September 2008

Two heads better than one? An unusual calcified mass discovered on lateral C-spine x-ray study.

J Emerg Med 2009 Aug 14;37(2):163-4. Epub 2008 Feb 14.

Department of Emergency Medicine, Temple University School of Medicine, Philadelphia, Pennsylvania 19140, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jemermed.2007.07.063DOI Listing
August 2009

Rapid real-time PCR detection of Listeria monocytogenes in enriched food samples based on the ssrA gene, a novel diagnostic target.

Food Microbiol 2008 Feb 6;25(1):75-84. Epub 2007 Aug 6.

Department of Microbiology, National University of Ireland Galway, University Road, Galway, Ireland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.fm.2007.07.007DOI Listing
February 2008

Potential GPRS 900/180-MHz and WCDMA 1900-MHz interference to medical devices.

IEEE Trans Biomed Eng 2007 Oct;54(10):1858-66

he Australian Centre for Bioeffects Research and Telstra Research Laboratories, Clayton, Victoria 3168, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1109/TBME.2007.904530DOI Listing
October 2007

Absence of Mycoplasma-specific DNA sequence in brain, blood and CSF of patients with multiple sclerosis (MS): a study by PCR and real-time PCR.

J Neurol Sci 2007 Feb 17;253(1-2):48-52. Epub 2007 Jan 17.

Molecular Diagnostics Laboratory, Department of Microbiology, National University of Ireland Galway, University Road, Galway, Ireland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jns.2006.11.017DOI Listing
February 2007

Stomatal lock-open, a consequence of epidermal cell death, follows transient suppression of stomatal opening in barley attacked by Blumeria graminis.

J Exp Bot 2006 22;57(10):2211-26. Epub 2006 Jun 22.

Institute of Grassland and Environmental Research, Aberystwyth, Ceredigion SY23 3EB, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/jxb/erj186DOI Listing
October 2006

Clinical decision rules and cervical spine injury in an elderly patient: a word of caution.

J Emerg Med 2005 Nov;29(4):433-6

Department of Emergency Medicine, Temple University Hospital, Philadelphia, Pennsylvania 19140, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jemermed.2005.05.006DOI Listing
November 2005

LC determination of impurities in methoxsalen drug substance: isolation and identification of isopimpinellin as a major impurity by atmospheric pressure chemical ionization LC/MS and NMR.

J Pharm Biomed Anal 2003 Nov;33(4):627-37

Department of Health and Human Services, Food and Drug Administration, Northeast Regional Laboratory, 158-15 Liberty Avenue, Jamaica, NY 11433, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/s0731-7085(03)00353-4DOI Listing
November 2003

Exposure to ultraviolet radiation causes apoptosis in developing sea urchin embryos.

J Exp Biol 2003 Nov;206(Pt 22):4097-103

Department of Zoology and Center for Marine Biology, University of New Hampshire, Durham, NH 03824, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1242/jeb.00621DOI Listing
November 2003

Manganese(III) acetate-mediated alkylation of beta-keto esters and beta-keto amides: an enantio- and diastereo-selective approach to substituted pyrrolidinones.

Org Biomol Chem 2003 Jan;1(2):373-80

Department of Chemistry, University of York, Heslington, York, UK YO10 5DD.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1039/b209123bDOI Listing
January 2003