Publications by authors named "Thomas A Jones"

22Publications

DNA sequence-based mapping and comparative genomics of the genome of (Pursh) Á. Löve versus wheat ( L.) and barley ( L.).

Genome 2020 Sep 8;63(9):445-457. Epub 2020 May 8.

Department of Animal, Dairy and Veterinary Sciences, Utah State University, Logan, UT 84322-4815, USA.

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http://dx.doi.org/10.1139/gen-2019-0152DOI Listing
September 2020

Sutural loading in bone- versus dental-borne rapid palatal expansion: An ex vivo study.

Orthod Craniofac Res 2020 May 7. Epub 2020 May 7.

Department of Orthodontics, College of Dentistry, University of Tennessee Health Science Center, Memphis, TN, USA.

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http://dx.doi.org/10.1111/ocr.12384DOI Listing
May 2020

Group I introns are widespread in archaea.

Nucleic Acids Res 2018 09;46(15):7970-7976

Howard Hughes Medical Institute, Harvard University, Cambridge, USA.

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http://dx.doi.org/10.1093/nar/gky414DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6125680PMC
September 2018

The Dfam database of repetitive DNA families.

Nucleic Acids Res 2016 Jan 26;44(D1):D81-9. Epub 2015 Nov 26.

University of Montana, Missoula, MT 59812, USA

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http://dx.doi.org/10.1093/nar/gkv1272DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702899PMC
January 2016

Rfam 12.0: updates to the RNA families database.

Nucleic Acids Res 2015 Jan 11;43(Database issue):D130-7. Epub 2014 Nov 11.

HHMI Janelia Farm Research Campus, Ashburn, VA, USA European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK

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http://dx.doi.org/10.1093/nar/gku1063DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383904PMC
January 2015

When local isn't best.

Authors:
Thomas A Jones

Evol Appl 2013 Nov 14;6(7):1109-18. Epub 2013 Aug 14.

USDA-Agricultural Research Service, Forage and Range Research Laboratory Logan, UT, USA.

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http://dx.doi.org/10.1111/eva.12090DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3804242PMC
November 2013

Patterns of movement and seed dispersal by three lemur species.

Am J Primatol 2014 Jan 9;76(1):84-96. Epub 2013 Sep 9.

Department of Ecology and Evolutionary Biology, Rice University, Houston, Texas; Centre ValBio Ranomafana, Ifanadiana, Fianarantsoa, Madagascar.

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http://dx.doi.org/10.1002/ajp.22199DOI Listing
January 2014

Dfam: a database of repetitive DNA based on profile hidden Markov models.

Nucleic Acids Res 2013 Jan 30;41(Database issue):D70-82. Epub 2012 Nov 30.

HHMI Janelia Farm Research Campus, Ashburn, VA 20147, USA.

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http://dx.doi.org/10.1093/nar/gks1265DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531169PMC
January 2013

A molecular genetic linkage map identifying the St and H subgenomes of Elymus (Poaceae: Triticeae) wheatgrass.

Genome 2011 Oct 23;54(10):819-28. Epub 2011 Sep 23.

United States Department of Agriculture, Agricultural Research Service, Forage & Range Research Laboratory, Utah State University, Logan, 84322-6300, USA.

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http://www.nrcresearchpress.com/doi/10.1139/g11-045
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http://dx.doi.org/10.1139/g11-045DOI Listing
October 2011

A survey of nematode SmY RNAs.

RNA Biol 2009 Jan-Mar;6(1):5-8. Epub 2009 Jan 26.

HHMI Janelia Farm Research Campus, Ashburn, Virginia, USA.

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http://dx.doi.org/10.4161/rna.6.1.7634DOI Listing
April 2009

Temporal and spatial variation in alkaloid levels in Achnatherum robustum, a native grass infected with the endophyte Neotyphodium.

J Chem Ecol 2006 Feb 23;32(2):307-24. Epub 2006 Mar 23.

School of Life Sciences, Arizona State University, PO Box 874501, Tempe, AZ 85287-4501, USA.

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http://dx.doi.org/10.1007/s10886-005-9003-xDOI Listing
February 2006

Generation and annotation of the DNA sequences of human chromosomes 2 and 4.

Authors:
Ladeana W Hillier Tina A Graves Robert S Fulton Lucinda A Fulton Kymberlie H Pepin Patrick Minx Caryn Wagner-McPherson Dan Layman Kristine Wylie Mandeep Sekhon Michael C Becker Ginger A Fewell Kimberly D Delehaunty Tracie L Miner William E Nash Colin Kremitzki Lachlan Oddy Hui Du Hui Sun Holland Bradshaw-Cordum Johar Ali Jason Carter Matt Cordes Anthony Harris Amber Isak Andrew van Brunt Christine Nguyen Feiyu Du Laura Courtney Joelle Kalicki Philip Ozersky Scott Abbott Jon Armstrong Edward A Belter Lauren Caruso Maria Cedroni Marc Cotton Teresa Davidson Anu Desai Glendoria Elliott Thomas Erb Catrina Fronick Tony Gaige William Haakenson Krista Haglund Andrea Holmes Richard Harkins Kyung Kim Scott S Kruchowski Cynthia Madsen Strong Neenu Grewal Ernest Goyea Shunfang Hou Andrew Levy Scott Martinka Kelly Mead Michael D McLellan Rick Meyer Jennifer Randall-Maher Chad Tomlinson Sara Dauphin-Kohlberg Amy Kozlowicz-Reilly Neha Shah Sharhonda Swearengen-Shahid Jacqueline Snider Joseph T Strong Johanna Thompson Martin Yoakum Shawn Leonard Charlene Pearman Lee Trani Maxim Radionenko Jason E Waligorski Chunyan Wang Susan M Rock Aye-Mon Tin-Wollam Rachel Maupin Phil Latreille Michael C Wendl Shiaw-Pyng Yang Craig Pohl John W Wallis John Spieth Tamberlyn A Bieri Nicolas Berkowicz Joanne O Nelson John Osborne Li Ding Rekha Meyer Aniko Sabo Yoram Shotland Prashant Sinha Patricia E Wohldmann Lisa L Cook Matthew T Hickenbotham James Eldred Donald Williams Thomas A Jones Xinwei She Francesca D Ciccarelli Elisa Izaurralde James Taylor Jeremy Schmutz Richard M Myers David R Cox Xiaoqiu Huang John D McPherson Elaine R Mardis Sandra W Clifton Wesley C Warren Asif T Chinwalla Sean R Eddy Marco A Marra Ivan Ovcharenko Terrence S Furey Webb Miller Evan E Eichler Peer Bork Mikita Suyama David Torrents Robert H Waterston Richard K Wilson

Nature 2005 Apr;434(7034):724-31

Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St. Louis, Missouri 63108, USA.

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http://dx.doi.org/10.1038/nature03466DOI Listing
April 2005

Kissing complex RNAs mediate interaction between the Fragile-X mental retardation protein KH2 domain and brain polyribosomes.

Genes Dev 2005 Apr 1;19(8):903-18. Epub 2005 Apr 1.

Howard Hughes Medical Institute and Laboratory of Molecular Neuro-Oncology, The Rockefeller University, New York, New York, USA.

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http://dx.doi.org/10.1101/gad.1276805DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1080130PMC
April 2005

Population structure in Pseudoroegneria spicata (Poaceae: Triticeae) modeled by Bayesian clustering of AFLP genotypes.

Am J Bot 2004 Nov;91(11):1789-801

United States Department of Agriculture, Agriculture Research Service, Forage and Range Research Laboratory, Logan, Utah 84322-6300 USA.

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http://dx.doi.org/10.3732/ajb.91.11.1789DOI Listing
November 2004

Molecular genetic linkage maps for allotetraploid Leymus wildryes (Gramineae: Triticeae).

Genome 2003 Aug;46(4):627-46

United States Department of Agriculture, Agruiculture Research Service, Fage and Range Research Laboratory, Utah State University, UT 84322-6300, USA.

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http://dx.doi.org/10.1139/g03-048DOI Listing
August 2003

Initial sequencing and comparative analysis of the mouse genome.

Authors:
Robert H Waterston Kerstin Lindblad-Toh Ewan Birney Jane Rogers Josep F Abril Pankaj Agarwal Richa Agarwala Rachel Ainscough Marina Alexandersson Peter An Stylianos E Antonarakis John Attwood Robert Baertsch Jonathon Bailey Karen Barlow Stephan Beck Eric Berry Bruce Birren Toby Bloom Peer Bork Marc Botcherby Nicolas Bray Michael R Brent Daniel G Brown Stephen D Brown Carol Bult John Burton Jonathan Butler Robert D Campbell Piero Carninci Simon Cawley Francesca Chiaromonte Asif T Chinwalla Deanna M Church Michele Clamp Christopher Clee Francis S Collins Lisa L Cook Richard R Copley Alan Coulson Olivier Couronne James Cuff Val Curwen Tim Cutts Mark Daly Robert David Joy Davies Kimberly D Delehaunty Justin Deri Emmanouil T Dermitzakis Colin Dewey Nicholas J Dickens Mark Diekhans Sheila Dodge Inna Dubchak Diane M Dunn Sean R Eddy Laura Elnitski Richard D Emes Pallavi Eswara Eduardo Eyras Adam Felsenfeld Ginger A Fewell Paul Flicek Karen Foley Wayne N Frankel Lucinda A Fulton Robert S Fulton Terrence S Furey Diane Gage Richard A Gibbs Gustavo Glusman Sante Gnerre Nick Goldman Leo Goodstadt Darren Grafham Tina A Graves Eric D Green Simon Gregory Roderic Guigó Mark Guyer Ross C Hardison David Haussler Yoshihide Hayashizaki LaDeana W Hillier Angela Hinrichs Wratko Hlavina Timothy Holzer Fan Hsu Axin Hua Tim Hubbard Adrienne Hunt Ian Jackson David B Jaffe L Steven Johnson Matthew Jones Thomas A Jones Ann Joy Michael Kamal Elinor K Karlsson Donna Karolchik Arkadiusz Kasprzyk Jun Kawai Evan Keibler Cristyn Kells W James Kent Andrew Kirby Diana L Kolbe Ian Korf Raju S Kucherlapati Edward J Kulbokas David Kulp Tom Landers J P Leger Steven Leonard Ivica Letunic Rosie Levine Jia Li Ming Li Christine Lloyd Susan Lucas Bin Ma Donna R Maglott Elaine R Mardis Lucy Matthews Evan Mauceli John H Mayer Megan McCarthy W Richard McCombie Stuart McLaren Kirsten McLay John D McPherson Jim Meldrim Beverley Meredith Jill P Mesirov Webb Miller Tracie L Miner Emmanuel Mongin Kate T Montgomery Michael Morgan Richard Mott James C Mullikin Donna M Muzny William E Nash Joanne O Nelson Michael N Nhan Robert Nicol Zemin Ning Chad Nusbaum Michael J O'Connor Yasushi Okazaki Karen Oliver Emma Overton-Larty Lior Pachter Genís Parra Kymberlie H Pepin Jane Peterson Pavel Pevzner Robert Plumb Craig S Pohl Alex Poliakov Tracy C Ponce Chris P Ponting Simon Potter Michael Quail Alexandre Reymond Bruce A Roe Krishna M Roskin Edward M Rubin Alistair G Rust Ralph Santos Victor Sapojnikov Brian Schultz Jörg Schultz Matthias S Schwartz Scott Schwartz Carol Scott Steven Seaman Steve Searle Ted Sharpe Andrew Sheridan Ratna Shownkeen Sarah Sims Jonathan B Singer Guy Slater Arian Smit Douglas R Smith Brian Spencer Arne Stabenau Nicole Stange-Thomann Charles Sugnet Mikita Suyama Glenn Tesler Johanna Thompson David Torrents Evanne Trevaskis John Tromp Catherine Ucla Abel Ureta-Vidal Jade P Vinson Andrew C Von Niederhausern Claire M Wade Melanie Wall Ryan J Weber Robert B Weiss Michael C Wendl Anthony P West Kris Wetterstrand Raymond Wheeler Simon Whelan Jamey Wierzbowski David Willey Sophie Williams Richard K Wilson Eitan Winter Kim C Worley Dudley Wyman Shan Yang Shiaw-Pyng Yang Evgeny M Zdobnov Michael C Zody Eric S Lander

Nature 2002 Dec;420(6915):520-62

Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St Louis, Missouri 63108, USA.

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http://dx.doi.org/10.1038/nature01262DOI Listing
December 2002

An analysis of patient compliance with nurse recommendations from an after-hours call center.

Am J Manag Care 2002 Apr;8(4):343-51

Department of Family Medicine and the Bowen Research Center, Indiana University School of Medicine, Indianapolis 46202-5102, USA.

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April 2002