Publications by authors named "Therese Commes"

39Publications

Recurrent Genetic Abnormalities in Human Pluripotent Stem Cells: Definition and Routine Detection in Culture Supernatant by Targeted Droplet Digital PCR.

Stem Cell Reports 2020 01 2;14(1):1-8. Epub 2020 Jan 2.

IRMB, University of Montpellier, INSERM, Hôpital Saint-Eloi, 34295 Montpellier, France; Department of Cell and Tissue Engineering, CHU Montpellier, 34295 Montpellier, France. Electronic address:

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http://dx.doi.org/10.1016/j.stemcr.2019.12.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6962701PMC
January 2020

RNA-Seq Analysis to Detect Abnormal Fusion Transcripts Linked to Chromothripsis.

Methods Mol Biol 2018 ;1769:133-156

Institut de Médecine Régénératrice et de Biothérapie, INSERM U1183, CHU Montpellier, Montpellier, France.

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http://dx.doi.org/10.1007/978-1-4939-7780-2_9DOI Listing
February 2019

DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.

Genome Biol 2017 12 28;18(1):243. Epub 2017 Dec 28.

Institute for Integrative Biology of the Cell, CEA, CNRS, Université Paris-Sud, Université Paris Saclay, Gif sur Yvette, France.

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http://dx.doi.org/10.1186/s13059-017-1372-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5747171PMC
December 2017

SimBA: A methodology and tools for evaluating the performance of RNA-Seq bioinformatic pipelines.

BMC Bioinformatics 2017 Sep 29;18(1):428. Epub 2017 Sep 29.

SeqOne, IRMB, CHRU de Montpellier -Hopital St Eloi, 80 avenue Augustin Fliche, Montpellier, 34295, France.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/s12859-017-1831-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5623974PMC
September 2017

On the evaluation of the fidelity of supervised classifiers in the prediction of chimeric RNAs.

BioData Min 2016 2;9:34. Epub 2016 Nov 2.

Institut de Médecine Régénératrice et de Biothérapie, INSERM U1183, CHU Montpellier, Montpellier, France ; Institut de Biologie Computationnelle, Université Montpellier, Montpellier, France ; Laboratoire d'Informatique, de Robotique et de Microélectronique de Montpellier, Université Montpellier, UMR 5506 CNRS, Montpellier, France ; PPGCC, Universidade Federal do Pará, Belém, Brazil ; Instituto Tecnológico Vale, Belém, Brazil.

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http://dx.doi.org/10.1186/s13040-016-0112-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5090896PMC
November 2016

Long non-coding RNAs in human early embryonic development and their potential in ART.

Hum Reprod Update 2016 12 21;23(1):19-40. Epub 2016 Sep 21.

Institute for Regenerative Medicine and Biotherapy, CHU Montpellier, Saint-Eloi Hospital, Montpellier F 34000, France

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http://dx.doi.org/10.1093/humupd/dmw035DOI Listing
December 2016

Identification of a 20-gene expression-based risk score as a predictor of clinical outcome in chronic lymphocytic leukemia patients.

Biomed Res Int 2014 5;2014:423174. Epub 2014 May 5.

INSERM, U1040, F-34197, Institute of Research in Biotherapy, CHU Montpellier, 80 Avenue Augustin Fliche, 34285 Montpellier Cedex, France ; CHU Montpellier, Institute of Research in Biotherapy, Montpellier, 80 Avenue Augustin Fliche, 34285 Montpellier, France ; Université Montpellier 1, UFR Médecine, Montpellier, 80 Avenue Augustin Fliche, 34285 Montpellier, France.

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http://dx.doi.org/10.1155/2014/423174DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4026849PMC
January 2015

Combining DGE and RNA-sequencing data to identify new polyA+ non-coding transcripts in the human genome.

Nucleic Acids Res 2014 Mar 18;42(5):2820-32. Epub 2013 Dec 18.

Transcriptomics, bioinformatics and myeloid leukaemia, INSERM, U1040, Institute for Research in Biotherapy, Montpellier F-34197, France, Université Montpellier 2, Montpellier, France, Institut de Biologie Computationnelle, Maison de la modélisation, Université Montpellier 2, France, LIRMM, MAB, CNRS UMR 5506, Université Montpellier 2, Montpellier, France and Genomic instability of pluripotent stem cells, INSERM, U1040, Institute for Research in Biotherapy, Montpellier F-34197, France.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkt1300DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3950697PMC
March 2014

Development of gene expression-based risk score in cytogenetically normal acute myeloid leukemia patients.

Oncotarget 2012 Aug;3(8):824-32

Groupe d'études des transcriptomes, Université MONTPELLIER 2, Montpellier, F-34197 France .

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3478459PMC
http://dx.doi.org/10.18632/oncotarget.571DOI Listing
August 2012

New prognostic markers, determined using gene expression analyses, reveal two distinct subtypes of chronic myelomonocytic leukaemia patients.

Br J Haematol 2012 May 6;157(3):347-56. Epub 2012 Mar 6.

Groupe d'études des transcriptomes, Université Montpellier 2, Centre de Recherche en Biochimie Macromoléculaire, Montpellier, France.

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http://dx.doi.org/10.1111/j.1365-2141.2012.09069.xDOI Listing
May 2012

Querying large read collections in main memory: a versatile data structure.

BMC Bioinformatics 2011 Jun 17;12:242. Epub 2011 Jun 17.

LIRMM, UMR 5506, CNRS and Université de Montpellier 2, CC 477, 161 rue Ada, 34095 Montpellier, France.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-12-242DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3163563PMC
June 2011

Using reads to annotate the genome: influence of length, background distribution, and sequence errors on prediction capacity.

Nucleic Acids Res 2009 Aug 16;37(15):e104. Epub 2009 Jun 16.

Laboratoire d'Informatique, de Robotique et de Microélectronique, Université de Montpellier II, UMR 5506 CNRS, 34392 Montpellier, France.

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http://dx.doi.org/10.1093/nar/gkp492DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2731892PMC
August 2009

Serial analysis of gene expression adapted for downsized extracts (SAGE/SADE) analysis in reticulocytes.

Methods Mol Biol 2009 ;496:299-311

Laboratoire de Biologie, Centre Hospitalier, Ales, France.

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http://dx.doi.org/10.1007/978-1-59745-553-4_20DOI Listing
December 2008

Simultaneous gene expression profiling in human macrophages infected with Leishmania major parasites using SAGE.

BMC Genomics 2008 May 21;9:238. Epub 2008 May 21.

Laboratoire d'Immuno-Pathologie, Vaccinologie et Génétique Moléculaire, WHO Collaborating Center for Research and Training in Leishmaniasis, Institut Pasteur de Tunis, 13 place Pasteur, BP 74, 1002 Tunis-Belvédère, Tunisia.

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http://dx.doi.org/10.1186/1471-2164-9-238DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2430024PMC
May 2008

Transcriptome annotation using tandem SAGE tags.

Nucleic Acids Res 2007 20;35(17):e108. Epub 2007 Aug 20.

Laboratoire d'Informatique, de Robotique et de Microélectronique, UMR 5506 CNRS-Université de Montpellier II, 161 rue Ada, 34392 Montpellier 05, France.

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http://dx.doi.org/10.1093/nar/gkm495DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2034470PMC
November 2007

Pharmacogenomic analysis of acute promyelocytic leukemia cells highlights CYP26 cytochrome metabolism in differential all-trans retinoic acid sensitivity.

Blood 2007 May 11;109(10):4450-60. Epub 2007 Jan 11.

Groupe d'Etude des Transcriptomes, Institut de génétique humaine, Unité Propre de Recherche, Centre National de la Recherche Scientifique, Montpellier, France.

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http://dx.doi.org/10.1182/blood-2006-10-051086DOI Listing
May 2007

Pituitary hormone mRNA expression in European sea bass Dicentrarchus labrax in seawater and following acclimation to fresh water.

J Endocrinol 2006 Nov;191(2):473-80

Adaptation Ecophysiologique et Ontogenèse, UMR 5171, GPIA, Université Montpellier II, Place Eugène Bataillon, CC092, 34095 Montpellier Cedex 05, France.

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http://dx.doi.org/10.1677/joe.1.06847DOI Listing
November 2006

Use of serial analysis of gene expression (SAGE) technology reveals new granulocytic markers.

J Immunol Methods 2004 Sep;292(1-2):43-58

Etablissement Français du Sang Pyrénées-Méditerranée, Laboratoire R&D Agents Transmissibles par Transfusion, 240 Avenue Emile Jeanbrau, 34094 Montpellier cedex 5, France.

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http://dx.doi.org/10.1016/j.jim.2004.06.012DOI Listing
September 2004

Analysis of human reticulocyte genes reveals altered erythropoiesis: potential use to detect recombinant human erythropoietin doping.

Haematologica 2004 Aug;89(8):991-7

Biophysical & Bioanalysis Laboratory, Faculty of Pharmacy, University Montpellier I, Montpellier, France.

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August 2004

Role of the putative tumor metastasis suppressor gene Drg-1 in breast cancer progression.

Oncogene 2004 Jul;23(33):5675-81

Department of Medical Microbiology and Immunology, Southern Illinois University School of Medicine, Springfield, IL 62702, USA.

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http://dx.doi.org/10.1038/sj.onc.1207734DOI Listing
July 2004

The Arabidopsis root transcriptome by serial analysis of gene expression. Gene identification using the genome sequence.

Plant Physiol 2004 Jan;134(1):67-80

Biochimie et Physiologie Moléculaire des Plantes, Unité Mixte de Recherche 5004, Agro-M/Centre National de la Recherche Scientifique/Institut National de la Recherche Agronomique/UM2, Place Viala, 34060 Montpellier 1, France.

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http://dx.doi.org/10.1104/pp.103.030536DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC316288PMC
January 2004

The Drg-1 gene suppresses tumor metastasis in prostate cancer.

Cancer Res 2003 Apr;63(8):1731-6

Department of Medical Microbiology and Immunology, Southern Illinois University School of Medicine, Springfield, Illinois 62702, USA.

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April 2003

[Transcriptomes for serial analysis of gene expression].

J Soc Biol 2002 ;196(4):303-7

Institut de Génétique Humaine, UPR CNRS 1142, 141 rue de la Cardonille, 34396 Montpellier.

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May 2003

Synthesis of new Targretin analogues that induce apoptosis in leukemia HL-60 cells.

Bioorg Med Chem Lett 2002 Dec;12(24):3529-32

Laboratoire de Chimie Biomoléculaire, UMR 5032, Université Montpellier II - CNRS - Laboratoires Mayoly Spindler, ENSCM, 8 Rue de l'Ecole Normale, 34296 Montpellier Cedex, France.

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http://dx.doi.org/10.1016/s0960-894x(02)00803-xDOI Listing
December 2002

Enhanced overexpression of an HIF-1/hypoxia-related protein in cancer cells.

Environ Health Perspect 2002 Oct;110 Suppl 5:783-8

Department of Environmental Medicine, New York University School of Medicine, 550 First Avenue, New York, NY 10016, USA.

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http://europepmc.org/articles/pmc1241245/pdf/ehp110s-000783.
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1241245PMC
http://dx.doi.org/10.1289/ehp.02110s5783DOI Listing
October 2002

White spot syndrome virus and infectious hypodermal and hematopoietic necrosis virus simultaneous diagnosis by miniarray system with colorimetry detection.

J Virol Methods 2002 Sep;105(2):189-96

Skuld-Tech, CC091, Université Montpellier II, place Eugène Bataillon, 34095, Montpellier, France.

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http://dx.doi.org/10.1016/s0166-0934(02)00106-4DOI Listing
September 2002

Transcriptome analysis of monocytic leukemia cell differentiation.

Genomics 2002 Sep;80(3):361-71

Institut de Génétique Humaine, UPR CNRS 1142, Montpellier, France.

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http://dx.doi.org/10.1006/geno.2002.6836DOI Listing
September 2002

Drg1, a novel target for modulating sensitivity to CPT-11 in colon cancer cells.

Cancer Res 2002 Jul;62(14):3950-5

Gastrointestinal Oncology Research Laboratory, Division of Solid Tumor Oncology, Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York 10021, USA.

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July 2002