Publications by authors named "Theodore C Goldstein"

9Publications

Comparative Tumor RNA Sequencing Analysis for Difficult-to-Treat Pediatric and Young Adult Patients With Cancer.

Authors:
Olena M Vaske Isabel Bjork Sofie R Salama Holly Beale Avanthi Tayi Shah Lauren Sanders Jacob Pfeil Du L Lam Katrina Learned Ann Durbin Ellen T Kephart Rob Currie Yulia Newton Teresa Swatloski Duncan McColl John Vivian Jingchun Zhu Alex G Lee Stanley G Leung Aviv Spillinger Heng-Yi Liu Winnie S Liang Sara A Byron Michael E Berens Adam C Resnick Norman Lacayo Sheri L Spunt Arun Rangaswami Van Huynh Lilibeth Torno Ashley Plant Ivan Kirov Keri B Zabokrtsky S Rod Rassekh Rebecca J Deyell Janessa Laskin Marco A Marra Leonard S Sender Sabine Mueller E Alejandro Sweet-Cordero Theodore C Goldstein David Haussler

JAMA Netw Open 2019 10 2;2(10):e1913968. Epub 2019 Oct 2.

University of California, Santa Cruz Genomics Institute, Santa Cruz.

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October 2019

Barriers to accessing public cancer genomic data.

Authors:
Katrina Learned Ann Durbin Robert Currie Ellen Towle Kephart Holly C Beale Lauren M Sanders Jacob Pfeil Theodore C Goldstein Sofie R Salama David Haussler Olena Morozova Vaske Isabel M Bjork

Sci Data 2019 06 20;6(1):98. Epub 2019 Jun 20.

UC Santa Cruz, 1156 High Street, Mailstop: Genomics Institute, Santa Cruz, CA, 95064, USA.

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June 2019

PatientExploreR: an extensible application for dynamic visualization of patient clinical history from electronic health records in the OMOP common data model.

Authors:
Benjamin S Glicksberg Boris Oskotsky Phyllis M Thangaraj Nicholas Giangreco Marcus A Badgeley Kipp W Johnson Debajyoti Datta Vivek A Rudrapatna Nadav Rappoport Mark M Shervey Riccardo Miotto Theodore C Goldstein Eugenia Rutenberg Remi Frazier Nelson Lee Sharat Israni Rick Larsen Bethany Percha Li Li Joel T Dudley Nicholas P Tatonetti Atul J Butte

Bioinformatics 2019 11;35(21):4515-4518

Bakar Computational Health Sciences Institute, University of California, San Francisco, San Francisco, CA, USA.

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November 2019

Genomic Hallmarks and Structural Variation in Metastatic Prostate Cancer.

Authors:
David A Quigley Ha X Dang Shuang G Zhao Paul Lloyd Rahul Aggarwal Joshi J Alumkal Adam Foye Vishal Kothari Marc D Perry Adina M Bailey Denise Playdle Travis J Barnard Li Zhang Jin Zhang Jack F Youngren Marcin P Cieslik Abhijit Parolia Tomasz M Beer George Thomas Kim N Chi Martin Gleave Nathan A Lack Amina Zoubeidi Robert E Reiter Matthew B Rettig Owen Witte Charles J Ryan Lawrence Fong Won Kim Terence Friedlander Jonathan Chou Haolong Li Rajdeep Das Hui Li Ruhollah Moussavi-Baygi Hani Goodarzi Luke A Gilbert Primo N Lara Christopher P Evans Theodore C Goldstein Joshua M Stuart Scott A Tomlins Daniel E Spratt R Keira Cheetham Donavan T Cheng Kyle Farh Julian S Gehring Jörg Hakenberg Arnold Liao Philip G Febbo John Shon Brad Sickler Serafim Batzoglou Karen E Knudsen Housheng H He Jiaoti Huang Alexander W Wyatt Scott M Dehm Alan Ashworth Arul M Chinnaiyan Christopher A Maher Eric J Small Felix Y Feng

Cell 2018 10;175(3):889

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October 2018

Genomic Hallmarks and Structural Variation in Metastatic Prostate Cancer.

Authors:
David A Quigley Ha X Dang Shuang G Zhao Paul Lloyd Rahul Aggarwal Joshi J Alumkal Adam Foye Vishal Kothari Marc D Perry Adina M Bailey Denise Playdle Travis J Barnard Li Zhang Jin Zhang Jack F Youngren Marcin P Cieslik Abhijit Parolia Tomasz M Beer George Thomas Kim N Chi Martin Gleave Nathan A Lack Amina Zoubeidi Robert E Reiter Matthew B Rettig Owen Witte Charles J Ryan Lawrence Fong Won Kim Terence Friedlander Jonathan Chou Haolong Li Rajdeep Das Hui Li Ruhollah Moussavi-Baygi Hani Goodarzi Luke A Gilbert Primo N Lara Christopher P Evans Theodore C Goldstein Joshua M Stuart Scott A Tomlins Daniel E Spratt R Keira Cheetham Donavan T Cheng Kyle Farh Julian S Gehring Jörg Hakenberg Arnold Liao Philip G Febbo John Shon Brad Sickler Serafim Batzoglou Karen E Knudsen Housheng H He Jiaoti Huang Alexander W Wyatt Scott M Dehm Alan Ashworth Arul M Chinnaiyan Christopher A Maher Eric J Small Felix Y Feng

Cell 2018 07 19;174(3):758-769.e9. Epub 2018 Jul 19.

Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco (UCSF), San Francisco, CA, USA; Division of Hematology and Oncology, Department of Medicine, UCSF, San Francisco, CA, USA; Department of Radiation Oncology, UCSF, San Francisco, CA, USA; Department of Urology, UCSF, San Francisco, CA, USA. Electronic address:

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July 2018

TumorMap: Exploring the Molecular Similarities of Cancer Samples in an Interactive Portal.

Authors:
Yulia Newton Adam M Novak Teresa Swatloski Duncan C McColl Sahil Chopra Kiley Graim Alana S Weinstein Robert Baertsch Sofie R Salama Kyle Ellrott Manu Chopra Theodore C Goldstein David Haussler Olena Morozova Joshua M Stuart

Cancer Res 2017 11;77(21):e111-e114

Department of Biomolecular Engineering and Bioinformatics, University of California, Santa Cruz, California.

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November 2017

Molecular pathways: extracting medical knowledge from high-throughput genomic data.

Authors:
Theodore C Goldstein Evan O Paull Matthew J Ellis Joshua M Stuart

Clin Cancer Res 2013 Jun 21;19(12):3114-20. Epub 2013 Feb 21.

Department of Biomolecular Engineering, University of California, Santa Cruz, California 95064, USA.

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June 2013

Whole-genome analysis informs breast cancer response to aromatase inhibition.

Authors:
Matthew J Ellis Li Ding Dong Shen Jingqin Luo Vera J Suman John W Wallis Brian A Van Tine Jeremy Hoog Reece J Goiffon Theodore C Goldstein Sam Ng Li Lin Robert Crowder Jacqueline Snider Karla Ballman Jason Weber Ken Chen Daniel C Koboldt Cyriac Kandoth William S Schierding Joshua F McMichael Christopher A Miller Charles Lu Christopher C Harris Michael D McLellan Michael C Wendl Katherine DeSchryver D Craig Allred Laura Esserman Gary Unzeitig Julie Margenthaler G V Babiera P Kelly Marcom J M Guenther Marilyn Leitch Kelly Hunt John Olson Yu Tao Christopher A Maher Lucinda L Fulton Robert S Fulton Michelle Harrison Ben Oberkfell Feiyu Du Ryan Demeter Tammi L Vickery Adnan Elhammali Helen Piwnica-Worms Sandra McDonald Mark Watson David J Dooling David Ota Li-Wei Chang Ron Bose Timothy J Ley David Piwnica-Worms Joshua M Stuart Richard K Wilson Elaine R Mardis

Nature 2012 Jun 10;486(7403):353-60. Epub 2012 Jun 10.

Department of Internal Medicine, Division of Oncology, Washington University, St Louis, Missouri 63110, USA.

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June 2012

Subtype and pathway specific responses to anticancer compounds in breast cancer.

Authors:
Laura M Heiser Anguraj Sadanandam Wen-Lin Kuo Stephen C Benz Theodore C Goldstein Sam Ng William J Gibb Nicholas J Wang Safiyyah Ziyad Frances Tong Nora Bayani Zhi Hu Jessica I Billig Andrea Dueregger Sophia Lewis Lakshmi Jakkula James E Korkola Steffen Durinck François Pepin Yinghui Guan Elizabeth Purdom Pierre Neuvial Henrik Bengtsson Kenneth W Wood Peter G Smith Lyubomir T Vassilev Bryan T Hennessy Joel Greshock Kurtis E Bachman Mary Ann Hardwicke John W Park Laurence J Marton Denise M Wolf Eric A Collisson Richard M Neve Gordon B Mills Terence P Speed Heidi S Feiler Richard F Wooster David Haussler Joshua M Stuart Joe W Gray Paul T Spellman

Proc Natl Acad Sci U S A 2012 Feb 14;109(8):2724-9. Epub 2011 Oct 14.

Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

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February 2012