Publications by authors named "Thang V Pham"

69 Publications

Neutrophil degranulation interconnects over-represented biological processes in atrial fibrillation.

Sci Rep 2021 Feb 3;11(1):2972. Epub 2021 Feb 3.

Department of Clinical and Experimental Cardiology, Amsterdam Cardiovascular Sciences, Amsterdam UMC, University of Amsterdam, Heart Centre, Meibergdreef 9, 1105 AZ, Amsterdam, The Netherlands.

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February 2021

Feasibility of phosphoproteomics to uncover oncogenic signalling in secreted extracellular vesicles using glioblastoma-EGFRVIII cells as a model.

J Proteomics 2021 02 8;232:104076. Epub 2020 Dec 8.

Amsterdam UMC, Vrije Universiteit Amsterdam, OncoProteomics Laboratory, Cancer Center Amsterdam, De Boelelaan 1117, Amsterdam, Netherlands; Amsterdam UMC, Vrije Universiteit Amsterdam, Department of Medical Oncology, Cancer Center Amsterdam, De Boelelaan 1117, Amsterdam, Netherlands.

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February 2021

Computational Analysis of Phosphoproteomics Data in Multi-Omics Cancer Studies.

Proteomics 2021 Feb 8;21(3-4):e1900312. Epub 2020 Oct 8.

Department of Medical Oncology, OncoProteomics Laboratory, CCA 1-60, Amsterdam UMC VUmc-location, De Boelelaan 1117, Amsterdam, 1081 HV, The Netherlands.

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February 2021

DPHL: A DIA Pan-human Protein Mass Spectrometry Library for Robust Biomarker Discovery.

Genomics Proteomics Bioinformatics 2020 Apr 12;18(2):104-119. Epub 2020 Aug 12.

Zhejiang Provincial Laboratory of Life Sciences and Biomedicine, Westlake University, Hangzhou 310024, China; Key Laboratory of Structural Biology of Zhejiang Province, School of Life Sciences, Westlake University, Hangzhou 310024, China; Institute of Basic Medical Sciences, Westlake Institute for Advanced Study, Hangzhou 310024, China. Electronic address:

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April 2020

Microdissected pancreatic cancer proteomes reveal tumor heterogeneity and therapeutic targets.

JCI Insight 2020 08 6;5(15). Epub 2020 Aug 6.

Laboratory for Experimental Oncology and Radiobiology, Amsterdam University Medical Centers, University of Amsterdam, Cancer Center Amsterdam, Amsterdam, Netherlands.

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August 2020

iq: an R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics.

Bioinformatics 2020 04;36(8):2611-2613

OncoProteomics Laboratory, Department of Medical Oncology, Cancer Center Amsterdam, Amsterdam UMC, Vrije Universiteit Amsterdam, Amsterdam 1081 HV, The Netherlands.

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April 2020

Tumor Heterogeneity Underlies Differential Cisplatin Sensitivity in Mouse Models of Small-Cell Lung Cancer.

Cell Rep 2019 06;27(11):3345-3358.e4

Oncode Institute, Division of Molecular Genetics, The Netherlands Cancer Institute, 1066 CX Amsterdam, the Netherlands; Division of Molecular Genetics, The Netherlands Cancer Institute, 1066 CX Amsterdam, the Netherlands. Electronic address:

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June 2019

Proteome analysis of non-small cell lung cancer cell line secretomes and patient sputum reveals biofluid biomarker candidates for cisplatin response prediction.

J Proteomics 2019 03 30;196:106-119. Epub 2019 Jan 30.

Amsterdam UMC, Vrije Universiteit Amsterdam, Department of Medical Oncology, Cancer Center Amsterdam, 1081 HV Amsterdam, the Netherlands. Electronic address:

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March 2019

Changes in the urinary extracellular vesicle proteome are associated with nephronophthisis-related ciliopathies.

J Proteomics 2019 02 30;192:27-36. Epub 2018 Jul 30.

Department of Genetics, Center for Molecular Medicine, University Medical Center Utrecht, Utrecht, the Netherlands. Electronic address:

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February 2019

Exploration of the platelet proteome in patients with early-stage cancer.

J Proteomics 2018 04 10;177:65-74. Epub 2018 Feb 10.

OncoProteomics Laboratory, Department of Medical Oncology, Cancer Center Amsterdam, VU Medical Center, Amsterdam, The Netherlands. Electronic address:

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April 2018

Identification of Differentially Expressed Splice Variants by the Proteogenomic Pipeline Splicify.

Mol Cell Proteomics 2017 10 26;16(10):1850-1863. Epub 2017 Jul 26.

From the ‡Translational Gastrointestinal Oncology, Department of Pathology, Netherlands Cancer Institute, Amsterdam, the Netherlands;

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October 2017