Publications by authors named "Terence Murphy"

45Publications

Reconfiguring DNA Nanotube Architectures Selective Regulation of Terminating Structures.

ACS Nano 2020 10 13;14(10):13451-13462. Epub 2020 Oct 13.

Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland 21218, United States.

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http://dx.doi.org/10.1021/acsnano.0c05340DOI Listing
October 2020

RefSeq curation and annotation of stop codon recoding in vertebrates.

Nucleic Acids Res 2019 01;47(2):594-606

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD 20894, USA.

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https://academic.oup.com/nar/advance-article/doi/10.1093/nar
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http://dx.doi.org/10.1093/nar/gky1234DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6344875PMC
January 2019

Improved reference genome of Aedes aegypti informs arbovirus vector control.

Nature 2018 11 14;563(7732):501-507. Epub 2018 Nov 14.

Laboratory of Neurogenetics and Behavior, The Rockefeller University, New York, NY, USA.

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http://www.nature.com/articles/s41586-018-0692-z
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http://dx.doi.org/10.1038/s41586-018-0692-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6421076PMC
November 2018

Whole Genome Sequencing of the Braconid Parasitoid Wasp , an Important Biocontrol Agent of Pest Tepritid Fruit Flies.

G3 (Bethesda) 2017 08 7;7(8):2407-2411. Epub 2017 Aug 7.

United States Department of Agriculture-Agricultural Research Service Daniel K. Inouye US Pacific Basin Agricultural Research Center, Hilo, Hawaii 96720.

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http://dx.doi.org/10.1534/g3.117.040741DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5555450PMC
August 2017

Erratum to: The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species.

Genome Biol 2017 01 18;18(1):11. Epub 2017 Jan 18.

USDA-ARS, Center for Medical, Agricultural and Veterinary Entomology, 1700 S.W. 23rd Drive, Gainesville, FL, 32608, USA.

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http://dx.doi.org/10.1186/s13059-017-1155-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5241912PMC
January 2017

The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species.

Genome Biol 2016 09 22;17(1):192. Epub 2016 Sep 22.

USDA-ARS, Center for Medical, Agricultural, and Veterinary Entomology, 1700 S.W. 23rd Drive, Gainesville, FL, 32608, USA.

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http://dx.doi.org/10.1186/s13059-016-1049-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5034548PMC
September 2016

Identification and Individualization of Lophophora using DNA Analysis of the trnL/trnF Region and rbcL Gene.

J Forensic Sci 2016 Jan 27;61 Suppl 1:S226-9. Epub 2015 Aug 27.

Department of Plant Biology, University of California, One Shields Avenue, Davis, CA, 95616.

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http://dx.doi.org/10.1111/1556-4029.12936DOI Listing
January 2016

Assembly: a resource for assembled genomes at NCBI.

Nucleic Acids Res 2016 Jan 17;44(D1):D73-80. Epub 2015 Nov 17.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA.

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http://dx.doi.org/10.1093/nar/gkv1226DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702866PMC
January 2016

Mouse genome annotation by the RefSeq project.

Mamm Genome 2015 Oct 28;26(9-10):379-90. Epub 2015 Jul 28.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD, 20894, USA.

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http://dx.doi.org/10.1007/s00335-015-9585-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4602073PMC
October 2015

RefSeq curation and annotation of antizyme and antizyme inhibitor genes in vertebrates.

Nucleic Acids Res 2015 Sep 13;43(15):7270-9. Epub 2015 Jul 13.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD 20894, USA

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http://dx.doi.org/10.1093/nar/gkv713DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4551939PMC
September 2015

The genomes of two key bumblebee species with primitive eusocial organization.

Authors:
Ben M Sadd Seth M Barribeau Guy Bloch Dirk C de Graaf Peter Dearden Christine G Elsik Jürgen Gadau Cornelis J P Grimmelikhuijzen Martin Hasselmann Jeffrey D Lozier Hugh M Robertson Guy Smagghe Eckart Stolle Matthias Van Vaerenbergh Robert M Waterhouse Erich Bornberg-Bauer Steffen Klasberg Anna K Bennett Francisco Câmara Roderic Guigó Katharina Hoff Marco Mariotti Monica Munoz-Torres Terence Murphy Didac Santesmasses Gro V Amdam Matthew Beckers Martin Beye Matthias Biewer Márcia M G Bitondi Mark L Blaxter Andrew F G Bourke Mark J F Brown Severine D Buechel Rossanah Cameron Kaat Cappelle James C Carolan Olivier Christiaens Kate L Ciborowski David F Clarke Thomas J Colgan David H Collins Andrew G Cridge Tamas Dalmay Stephanie Dreier Louis du Plessis Elizabeth Duncan Silvio Erler Jay Evans Tiago Falcon Kevin Flores Flávia C P Freitas Taro Fuchikawa Tanja Gempe Klaus Hartfelder Frank Hauser Sophie Helbing Fernanda C Humann Frano Irvine Lars S Jermiin Claire E Johnson Reed M Johnson Andrew K Jones Tatsuhiko Kadowaki Jonathan H Kidner Vasco Koch Arian Köhler F Bernhard Kraus H Michael G Lattorff Megan Leask Gabrielle A Lockett Eamonn B Mallon David S Marco Antonio Monika Marxer Ivan Meeus Robin F A Moritz Ajay Nair Kathrin Näpflin Inga Nissen Jinzhi Niu Francis M F Nunes John G Oakeshott Amy Osborne Marianne Otte Daniel G Pinheiro Nina Rossié Olav Rueppell Carolina G Santos Regula Schmid-Hempel Björn D Schmitt Christina Schulte Zilá L P Simões Michelle P M Soares Luc Swevers Eva C Winnebeck Florian Wolschin Na Yu Evgeny M Zdobnov Peshtewani K Aqrawi Kerstin P Blankenburg Marcus Coyle Liezl Francisco Alvaro G Hernandez Michael Holder Matthew E Hudson LaRonda Jackson Joy Jayaseelan Vandita Joshi Christie Kovar Sandra L Lee Robert Mata Tittu Mathew Irene F Newsham Robin Ngo Geoffrey Okwuonu Christopher Pham Ling-Ling Pu Nehad Saada Jireh Santibanez DeNard Simmons Rebecca Thornton Aarti Venkat Kimberly K O Walden Yuan-Qing Wu Griet Debyser Bart Devreese Claire Asher Julie Blommaert Ariel D Chipman Lars Chittka Bertrand Fouks Jisheng Liu Meaghan P O'Neill Seirian Sumner Daniela Puiu Jiaxin Qu Steven L Salzberg Steven E Scherer Donna M Muzny Stephen Richards Gene E Robinson Richard A Gibbs Paul Schmid-Hempel Kim C Worley

Genome Biol 2015 Apr 24;16:76. Epub 2015 Apr 24.

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, MS BCM226, One Baylor Plaza, Houston, TX, 77030, USA.

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http://dx.doi.org/10.1186/s13059-015-0623-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4414376PMC
April 2015

Gene: a gene-centered information resource at NCBI.

Nucleic Acids Res 2015 Jan 29;43(Database issue):D36-42. Epub 2014 Oct 29.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20892-6510, USA

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http://dx.doi.org/10.1093/nar/gku1055DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383897PMC
January 2015

Comparison of RefSeq protein-coding regions in human and vertebrate genomes.

BMC Genomics 2013 Sep 25;14:654. Epub 2013 Sep 25.

National Center for Biotechnology Information, U,S, National Library of Medicine, 8600 Rockville Pike, Bethesda, MD 20894, USA.

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http://dx.doi.org/10.1186/1471-2164-14-654DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3882889PMC
September 2013

DNA identification of Salvia divinorum samples.

Forensic Sci Int Genet 2013 Jan 9;7(1):189-93. Epub 2012 May 9.

Department of Plant Biology, University of California, One Shields Avenue, Davis, CA 95616, USA.

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http://dx.doi.org/10.1016/j.fsigen.2012.04.004DOI Listing
January 2013

Technique of extracting a compression intramedullary nail that preserves knee arthrodesis.

Acta Orthop 2011 Jun 11;82(3):378-9. Epub 2011 May 11.

Department of Orthopaedic Surgery, Mater Misericordiae University Hospital, Dublin, Ireland.

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http://dx.doi.org/10.3109/17453674.2011.584207DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3235320PMC
June 2011

Transcriptional responses in the adaptation to ischaemia-reperfusion injury: a study of the effect of ischaemic preconditioning in total knee arthroplasty patients.

J Transl Med 2010 May 10;8:46. Epub 2010 May 10.

UCD Clinical Research Centre, UCD School of Medicine and Medical Sciences, Mater University Hospital, Dublin, Ireland.

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http://dx.doi.org/10.1186/1479-5876-8-46DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2876069PMC
May 2010

Functional and evolutionary insights from the genomes of three parasitoid Nasonia species.

Authors:
John H Werren Stephen Richards Christopher A Desjardins Oliver Niehuis Jürgen Gadau John K Colbourne John H Werren Stephen Richards Christopher A Desjardins Oliver Niehuis Jürgen Gadau John K Colbourne Leo W Beukeboom Claude Desplan Christine G Elsik Cornelis J P Grimmelikhuijzen Paul Kitts Jeremy A Lynch Terence Murphy Deodoro C S G Oliveira Christopher D Smith Louis van de Zande Kim C Worley Evgeny M Zdobnov Maarten Aerts Stefan Albert Victor H Anaya Juan M Anzola Angel R Barchuk Susanta K Behura Agata N Bera May R Berenbaum Rinaldo C Bertossa Márcia M G Bitondi Seth R Bordenstein Peer Bork Erich Bornberg-Bauer Marleen Brunain Giuseppe Cazzamali Lesley Chaboub Joseph Chacko Dean Chavez Christopher P Childers Jeong-Hyeon Choi Michael E Clark Charles Claudianos Rochelle A Clinton Andrew G Cree Alexandre S Cristino Phat M Dang Alistair C Darby Dirk C de Graaf Bart Devreese Huyen H Dinh Rachel Edwards Navin Elango Eran Elhaik Olga Ermolaeva Jay D Evans Sylvain Foret Gerald R Fowler Daniel Gerlach Joshua D Gibson Donald G Gilbert Dan Graur Stefan Gründer Darren E Hagen Yi Han Frank Hauser Da Hultmark Henry C Hunter Gregory D D Hurst Shalini N Jhangian Huaiyang Jiang Reed M Johnson Andrew K Jones Thomas Junier Tatsuhiko Kadowaki Albert Kamping Yuri Kapustin Bobak Kechavarzi Jaebum Kim Jay Kim Boris Kiryutin Tosca Koevoets Christie L Kovar Evgenia V Kriventseva Robert Kucharski Heewook Lee Sandra L Lee Kristin Lees Lora R Lewis David W Loehlin John M Logsdon Jacqueline A Lopez Ryan J Lozado Donna Maglott Ryszard Maleszka Anoop Mayampurath Danielle J Mazur Marcella A McClure Andrew D Moore Margaret B Morgan Jean Muller Monica C Munoz-Torres Donna M Muzny Lynne V Nazareth Susanne Neupert Ngoc B Nguyen Francis M F Nunes John G Oakeshott Geoffrey O Okwuonu Bart A Pannebakker Vikas R Pejaver Zuogang Peng Stephen C Pratt Reinhard Predel Ling-Ling Pu Hilary Ranson Rhitoban Raychoudhury Andreas Rechtsteiner Justin T Reese Jeffrey G Reid Megan Riddle Hugh M Robertson Jeanne Romero-Severson Miriam Rosenberg Timothy B Sackton David B Sattelle Helge Schlüns Thomas Schmitt Martina Schneider Andreas Schüler Andrew M Schurko David M Shuker Zilá L P Simões Saurabh Sinha Zachary Smith Victor Solovyev Alexandre Souvorov Andreas Springauf Elisabeth Stafflinger Deborah E Stage Mario Stanke Yoshiaki Tanaka Arndt Telschow Carol Trent Selina Vattathil Eveline C Verhulst Lumi Viljakainen Kevin W Wanner Robert M Waterhouse James B Whitfield Timothy E Wilkes Michael Williamson Judith H Willis Florian Wolschin Stefan Wyder Takuji Yamada Soojin V Yi Courtney N Zecher Lan Zhang Richard A Gibbs

Antimutagenic specificities of two plant glycosylases, oxoguanine glycosylase and formamidopyrimidine glycosylase, assayed in vivo.

Biochem Biophys Res Commun 2010 Feb 11;392(3):335-9. Epub 2010 Jan 11.

Department of Plant Biology, University of California, Davis, CA 95616, USA.

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http://dx.doi.org/10.1016/j.bbrc.2010.01.020DOI Listing
February 2010

BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum.

Nucleic Acids Res 2010 Jan 9;38(Database issue):D437-42. Epub 2009 Oct 9.

KSU Bioinformatics Center, Division of Biology, Kansas State University, Manhattan, KS 66506, USA.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkp807DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808946PMC
January 2010

The completion of the Mammalian Gene Collection (MGC).

Authors:
Gary Temple Daniela S Gerhard Rebekah Rasooly Elise A Feingold Peter J Good Cristen Robinson Allison Mandich Jeffrey G Derge Jeanne Lewis Debonny Shoaf Francis S Collins Wonhee Jang Lukas Wagner Carolyn M Shenmen Leonie Misquitta Carl F Schaefer Kenneth H Buetow Tom I Bonner Linda Yankie Ming Ward Lon Phan Alex Astashyn Garth Brown Catherine Farrell Jennifer Hart Melissa Landrum Bonnie L Maidak Michael Murphy Terence Murphy Bhanu Rajput Lillian Riddick David Webb Janet Weber Wendy Wu Kim D Pruitt Donna Maglott Adam Siepel Brona Brejova Mark Diekhans Rachel Harte Robert Baertsch Jim Kent David Haussler Michael Brent Laura Langton Charles L G Comstock Michael Stevens Chaochun Wei Marijke J van Baren Kourosh Salehi-Ashtiani Ryan R Murray Lila Ghamsari Elizabeth Mello Chenwei Lin Christa Pennacchio Kirsten Schreiber Nicole Shapiro Amber Marsh Elizabeth Pardes Troy Moore Anita Lebeau Mike Muratet Blake Simmons David Kloske Stephanie Sieja James Hudson Praveen Sethupathy Michael Brownstein Narayan Bhat Joseph Lazar Howard Jacob Chris E Gruber Mark R Smith John McPherson Angela M Garcia Preethi H Gunaratne Jiaqian Wu Donna Muzny Richard A Gibbs Alice C Young Gerard G Bouffard Robert W Blakesley Jim Mullikin Eric D Green Mark C Dickson Alex C Rodriguez Jane Grimwood Jeremy Schmutz Richard M Myers Martin Hirst Thomas Zeng Kane Tse Michelle Moksa Merinda Deng Kevin Ma Diana Mah Johnson Pang Greg Taylor Eric Chuah Athena Deng Keith Fichter Anne Go Stephanie Lee Jing Wang Malachi Griffith Ryan Morin Richard A Moore Michael Mayo Sarah Munro Susan Wagner Steven J M Jones Robert A Holt Marco A Marra Sun Lu Shuwei Yang James Hartigan Marcus Graf Ralf Wagner Stanley Letovksy Jacqueline C Pulido Keith Robison Dominic Esposito James Hartley Vanessa E Wall Ralph F Hopkins Osamu Ohara Stefan Wiemann

Requirement for abasic endonuclease gene homologues in Arabidopsis seed development.

PLoS One 2009 27;4(1):e4297. Epub 2009 Jan 27.

Section of Plant Biology, University of California Davis, Davis, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0004297PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2627920PMC
May 2009

DNA analysis of natural fiber rope.

J Forensic Sci 2009 Jan 6;54(1):108-13. Epub 2008 Nov 6.

Department of Plant Biology, University of California, One Shields Avenue, Davis, CA 95616, USA.

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http://dx.doi.org/10.1111/j.1556-4029.2008.00906.xDOI Listing
January 2009

Stationary phase-induction of G-->T mutations in Escherichia coli.

Mutat Res 2006 Apr 21;596(1-2):106-12. Epub 2006 Feb 21.

Section of Plant Biology, University of California, One Shields Avenue, Davis, CA 95616, USA.

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http://dx.doi.org/10.1016/j.mrfmmm.2005.12.015DOI Listing
April 2006

A comparison of two DNA base excision repair glycosylases from Arabidopsis thaliana.

Biochem Biophys Res Commun 2005 Apr;329(3):869-72

Plant Biology Section, University of California, Davis, CA 95616, USA.

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http://dx.doi.org/10.1016/j.bbrc.2005.02.054DOI Listing
April 2005

Novel expression pattern of cytosolic Gln synthetase in nitrogen-fixing root nodules of the actinorhizal host, Datisca glomerata.

Plant Physiol 2004 Jul 9;135(3):1849-62. Epub 2004 Jul 9.

Department of Environmental Horticulture, University of California, Davis, California 95616, USA.

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http://dx.doi.org/10.1104/pp.103.031534DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC519095PMC
July 2004

Polyphenol glucosylating activity in cell suspensions of grape (Vitis vinifera).

J Agric Food Chem 2004 Jun;52(11):3467-72

Division of Biological Sciences, University of California, One Shields Ave, Davis, CA, 95616, USA.

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http://dx.doi.org/10.1021/jf035234rDOI Listing
June 2004

Hydrogen peroxide-induced chilling tolerance in mung beans mediated through ABA-independent glutathione accumulation.

Funct Plant Biol 2003 Oct;30(9):955-963

AFFILIATION IDAUTHORID Department of Life Science, National Chung Hsing University, Taichung, Taiwan, Republic of China. Corresponding author; email:

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http://dx.doi.org/10.1071/FP03091DOI Listing
October 2003

Drosophila skpA, a component of SCF ubiquitin ligases, regulates centrosome duplication independently of cyclin E accumulation.

Authors:
Terence D Murphy

J Cell Sci 2003 Jun;116(Pt 11):2321-32

Department of Embryology, Carnegie Institution of Washington, Baltimore, MD 21210, USA.

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http://dx.doi.org/10.1242/jcs.00463DOI Listing
June 2003

H2O2 treatment induces glutathione accumulation and chilling tolerance in mung bean.

Funct Plant Biol 2002 Aug;29(9):1081-1087

Botany Department, National Chung Hsing University, Taichung, Taiwan, Republic of China.Corresponding author; email:

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http://dx.doi.org/10.1071/PP01264DOI Listing
August 2002