Teppei Shimamura

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Teppei Shimamura

Publications by authors named "Teppei Shimamura"

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58Publications

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Comprehensive genetic analysis of donor cell derived leukemia with KMT2A rearrangement.

Pediatr Blood Cancer 2018 Feb 17;65(2). Epub 2017 Sep 17.

Department of Pediatrics, Nagoya University Graduate School of Medicine, Nagoya, Japan.

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February 2018

Adaptive NetworkProfiler for Identifying Cancer Characteristic-Specific Gene Regulatory Networks.

J Comput Biol 2018 Feb 20;25(2):130-145. Epub 2017 Oct 20.

4 Human Genome Center, Institute of Medical Science, University of Tokyo , Tokyo, Japan .

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February 2018

Identification of Cardiomyocyte-Fated Progenitors from Human-Induced Pluripotent Stem Cells Marked with CD82.

Cell Rep 2018 Jan;22(2):546-556

Department of Cell Growth and Differentiation, Center for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto 606-8507, Japan. Electronic address:

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January 2018

Long Noncoding RNA JHDM1D-AS1 Promotes Tumor Growth by Regulating Angiogenesis in Response to Nutrient Starvation.

Mol Cell Biol 2017 Sep 28;37(18). Epub 2017 Aug 28.

Laboratory for Systems Biology and Medicine, RCAST, The University of Tokyo, Tokyo, Japan

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September 2017

phyC: Clustering cancer evolutionary trees.

PLoS Comput Biol 2017 May 1;13(5):e1005509. Epub 2017 May 1.

Division of Systems Biology, Nagoya University Graduate School of Medicine, Nagoya, Japan.

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May 2017

Extracellular Acidic pH Activates the Sterol Regulatory Element-Binding Protein 2 to Promote Tumor Progression.

Cell Rep 2017 02;18(9):2228-2242

The Translational Systems Biology and Medicine Initiative (TSBMI), Center for Disease Biology and Integrative Medicine, Faculty of Medicine, The University of Tokyo, Tokyo 113-8655, Japan; Laboratory for Systems Biology and Medicine, RCAST, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo, 153-8904, Japan. Electronic address:

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February 2017

D3M: detection of differential distributions of methylation levels.

Bioinformatics 2016 08 11;32(15):2248-55. Epub 2016 Mar 11.

Nagoya University Graduate School of Medicine, Nagoya 466-8550, Japan.

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August 2016

NECAB3 Promotes Activation of Hypoxia-inducible factor-1 during Normoxia and Enhances Tumourigenicity of Cancer Cells.

Sci Rep 2016 Mar 7;6:22784. Epub 2016 Mar 7.

Division of Cancer Cell Research, Institute of Medical Science, The University of Tokyo, Shirokanedai, Minato-ku, Tokyo, Japan.

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March 2016

Elevated β-catenin pathway as a novel target for patients with resistance to EGF receptor targeting drugs.

Sci Rep 2015 Aug 13;5:13076. Epub 2015 Aug 13.

1] Division of Cancer Cell Biology, Cancer Research Institute, Kanazawa University [2] Division of Molecular Therapy, Institute of Medical Science, University of Tokyo.

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August 2015

Robust prediction of anti-cancer drug sensitivity and sensitivity-specific biomarker.

PLoS One 2014 17;9(10):e108990. Epub 2014 Oct 17.

Human Genome Center, Institute of Medical Science, University of Tokyo, Tokyo, Japan.

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July 2015

Genomic data assimilation using a higher moment filtering technique for restoration of gene regulatory networks.

BMC Syst Biol 2015 Mar 13;9:14. Epub 2015 Mar 13.

Bioinformatics Center, Institute for Chemical Research, Kyoto University, Gokasho, Kyoto, 611-0011 Uji, Japan.

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March 2015

Biallelic DICER1 mutations in sporadic pleuropulmonary blastoma.

Cancer Res 2014 May 27;74(10):2742-9. Epub 2014 Mar 27.

Authors' Affiliations: Department of Pediatrics; Cancer Genomics Project, Graduate School of Medicine; Laboratory of DNA Information Analysis and Sequence Data Analysis, Human Genome Center, Institute of Medical Science; Department of Cell Therapy and Transplantation Medicine, The University of Tokyo, Tokyo; Department of Pathology and Tumor Biology, Graduate School of Medicine, Kyoto University, Kyoto; Division of Pediatric Hematology and Oncology, Ibaraki Children's Hospital, Mito, Ibaraki; Department of Hematology/Oncology, Saitama Children's Medical Center, Saitama, Saitama; Department of Pediatrics, School of Medicine, Fukuoka University, Fukuoka; Gunma Children's Medical Center, Shibukawa, Gunma; Department of Hematology and Oncology, Hyogo Prefectural Kobe Children's Hospital, Kobe, Hyogo; and National Center for Child Health and Development, Tokyo, Japan

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May 2014

Systems biology analysis of Drosophila in vivo screen data elucidates core networks for DNA damage repair in SCA1.

Hum Mol Genet 2014 Mar 31;23(5):1345-64. Epub 2013 Oct 31.

Department of Neuropathology, Medical Research Institute, Tokyo Medical and Dental University, 1-5-45 Yushima, Bunkyo-ku, Tokyo 113-8510, Japan.

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March 2014

Collocation-based sparse estimation for constructing dynamic gene networks.

Genome Inform 2010 ;24:164-78

Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan.

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January 2014

Sign: large-scale gene network estimation environment for high performance computing.

Genome Inform 2011 ;25(1):40-52

Human Genome Center, Institute of Medical Science, The University of Tokyo, Minato-ku, Tokyo, Japan.

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December 2013

The tumor-suppressive miR-497-195 cluster targets multiple cell-cycle regulators in hepatocellular carcinoma.

PLoS One 2013 27;8(3):e60155. Epub 2013 Mar 27.

Department of Molecular Cytogenetics, Medical Research Institute and School of Biomedical Science, Tokyo Medical and Dental University, Tokyo, Japan.

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September 2013

A restricted level of PQBP1 is needed for the best longevity of Drosophila.

Neurobiol Aging 2013 Jan 15;34(1):356.e11-20. Epub 2012 Aug 15.

Department of Neuropathology, Medical Research Institute, Tokyo Medical and Dental University, Tokyo, Japan.

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January 2013

Identifying gene pathways associated with cancer characteristics via sparse statistical methods.

IEEE/ACM Trans Comput Biol Bioinform 2012 Jul-Aug;9(4):966-72

Department of Mathematical Sciences, Graduate School of Engineering, Osaka Prefecture University, 1-1 Gakuen-cho, Sakai, Osaka 599-8531, Japan.

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October 2012

Statistical model-based testing to evaluate the recurrence of genomic aberrations.

Bioinformatics 2012 Jun;28(12):i115-20

Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan.

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June 2012

A novel network profiling analysis reveals system changes in epithelial-mesenchymal transition.

PLoS One 2011 7;6(6):e20804. Epub 2011 Jun 7.

Human Genome Center, Institute of Medical Science, University of Tokyo, Minato-ku, Tokyo, Japan.

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October 2011

Estimating exogenous variables in data with more variables than observations.

Neural Netw 2011 Oct 15;24(8):875-80. Epub 2011 Jun 15.

The Institute of Scientific and Industrial Research, Osaka University, Mihogaoka 8-1, Ibaraki, Osaka 567-0047, Japan.

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October 2011

Inferring contagion in regulatory networks.

IEEE/ACM Trans Comput Biol Bioinform 2011 Mar-Apr;8(2):570-76

A. Fujita is with the Computational Science Research Program, RIKEN, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan.

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June 2011

Model-free unsupervised gene set screening based on information enrichment in expression profiles.

Bioinformatics 2010 Dec 19;26(24):3090-7. Epub 2010 Oct 19.

Human Genome Center, Institute of Medical Science, University of Tokyo, Japan.

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December 2010

Inferring dynamic gene networks under varying conditions for transcriptomic network comparison.

Bioinformatics 2010 Apr 1;26(8):1064-72. Epub 2010 Mar 1.

Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo, 108-8639, Japan.

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April 2010

A state space representation of VAR models with sparse learning for dynamic gene networks.

Genome Inform 2010 Jan;22:56-68

Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan.

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January 2010

Estimation of nonlinear gene regulatory networks via L1 regularized NVAR from time series gene expression data.

Genome Inform 2008 ;20:37-51

Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan.

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July 2009

Recursive regularization for inferring gene networks from time-course gene expression profiles.

BMC Syst Biol 2009 Apr 22;3:41. Epub 2009 Apr 22.

Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan.

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April 2009

Weighted lasso in graphical Gaussian modeling for large gene network estimation based on microarray data.

Genome Inform 2007 ;19:142-53

Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan.

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July 2008