Publications by authors named "Tatiana Karpinets"

32Publications

Linking Associations of Rare Low-Abundance Species to Their Environments by Association Networks.

Front Microbiol 2018 7;9:297. Epub 2018 Mar 7.

Department of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX, United States.

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http://dx.doi.org/10.3389/fmicb.2018.00297DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5850922PMC
March 2018

Insights from 20 years of bacterial genome sequencing.

Funct Integr Genomics 2015 Mar 27;15(2):141-61. Epub 2015 Feb 27.

Comparative Genomics Group, Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.

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http://dx.doi.org/10.1007/s10142-015-0433-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4361730PMC
March 2015

Binding Motifs in Bacterial Gene Promoters Modulate Transcriptional Effects of Global Regulators CRP and ArcA.

Gene Regul Syst Bio 2012 30;6:93-107. Epub 2012 May 30.

Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.

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http://journals.sagepub.com/doi/10.4137/GRSB.S9357
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http://dx.doi.org/10.4137/GRSB.S9357DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3370831PMC
August 2012

Analyzing large biological datasets with association networks.

Nucleic Acids Res 2012 Sep 25;40(17):e131. Epub 2012 May 25.

Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.

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http://dx.doi.org/10.1093/nar/gks403DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3458522PMC
September 2012

Enhancing a Pathway-Genome Database (PGDB) to capture subcellular localization of metabolites and enzymes: the nucleotide-sugar biosynthetic pathways of Populus trichocarpa.

Database (Oxford) 2012 31;2012:bas013. Epub 2012 Mar 31.

Computational Sciences Center, National Renewable Energy Laboratory, 1617 Cole Boulevard, Golden, CO 80401, USA.

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http://dx.doi.org/10.1093/database/bas013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3316911PMC
June 2012

From pull-down data to protein interaction networks and complexes with biological relevance.

Bioinformatics 2008 Apr 26;24(7):979-86. Epub 2008 Feb 26.

Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.

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http://dx.doi.org/10.1093/bioinformatics/btn036DOI Listing
April 2008

RNA:protein ratio of the unicellular organism as a characteristic of phosphorous and nitrogen stoichiometry and of the cellular requirement of ribosomes for protein synthesis.

BMC Biol 2006 Sep 5;4:30. Epub 2006 Sep 5.

Department of Plant Sciences, University of Tennessee, 2431 Joe Johnson Drive, Knoxville, TN 37996-4561, USA.

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http://dx.doi.org/10.1186/1741-7007-4-30DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1574349PMC
September 2006

Histone H3 lysine 9 and H4 lysine 20 trimethylation and the expression of Suv4-20h2 and Suv-39h1 histone methyltransferases in hepatocarcinogenesis induced by methyl deficiency in rats.

Carcinogenesis 2006 Jun 23;27(6):1180-6. Epub 2006 Feb 23.

National Center for Toxicological Research, Jefferson, AR 72078, National Cancer Institute, Bethesda, MD 20892 and University of Tennessee, Knoxville, TN 37996, USA.

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http://dx.doi.org/10.1093/carcin/bgi364DOI Listing
June 2006

Tumorigenesis: the adaptation of mammalian cells to sustained stress environment by epigenetic alterations and succeeding matched mutations.

Carcinogenesis 2005 Aug 31;26(8):1323-34. Epub 2005 Mar 31.

Department of Plant Sciences, University of Tennessee, 2431 Center Drive Knoxville, TN 37996-4500, USA.

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http://dx.doi.org/10.1093/carcin/bgi079DOI Listing
August 2005

Tailored gene array databases: applications in mechanistic toxicology.

Bioinformatics 2004 Mar 22;20(4):507-17. Epub 2004 Jan 22.

Department of Physics, Wright State University, 3640 Colonel Glenn Hwy, Dayton, OH 45435, USA.

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http://dx.doi.org/10.1093/bioinformatics/btg436DOI Listing
March 2004

Model of the developing tumorigenic phenotype in mammalian cells and the roles of sustained stress and replicative senescence.

J Theor Biol 2004 Mar;227(2):253-64

Department of Physics, Wright State University, 3640 Colonel Glenn Hwy, Dayton, OH 45435, USA.

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http://dx.doi.org/10.1016/j.jtbi.2003.11.005DOI Listing
March 2004